Wall clock time and date at job start Tue Mar 31 2020 21:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46896 * 110.99672 * 2 1 4 4 C 1.46896 * 110.99825 * 123.95248 * 2 1 3 5 5 H 1.09003 * 109.46717 * 196.41777 * 4 2 1 6 6 C 1.53004 * 109.47076 * 316.41824 * 4 2 1 7 7 N 1.46498 * 109.47060 * 293.14662 * 6 4 2 8 8 C 1.34948 * 126.03662 * 126.44034 * 7 6 4 9 9 C 1.35316 * 107.74542 * 179.97438 * 8 7 6 10 10 C 1.39870 * 107.92258 * 359.97438 * 9 8 7 11 11 N 1.30837 * 108.19777 * 359.73935 * 10 9 8 12 12 C 1.50695 * 109.47126 * 76.41926 * 4 2 1 13 13 O 1.21284 * 120.00328 * 340.00018 * 12 4 2 14 14 N 1.34781 * 119.99951 * 159.99970 * 12 4 2 15 15 C 1.46505 * 120.00006 * 180.02562 * 14 12 4 16 16 H 1.08998 * 110.78026 * 31.75971 * 15 14 12 17 17 C 1.54339 * 110.84920 * 268.69273 * 15 14 12 18 18 N 1.47014 * 107.26312 * 219.67169 * 17 15 14 19 19 C 1.36939 * 125.64638 * 178.84624 * 18 17 15 20 20 H 1.07993 * 120.00176 * 347.52915 * 19 18 17 21 21 C 1.38819 * 119.99952 * 167.52180 * 19 18 17 22 22 N 1.31622 * 119.99630 * 351.34934 * 21 19 18 23 23 Si 1.86796 * 119.99847 * 171.34097 * 21 19 18 24 24 H 1.48499 * 109.47394 * 265.06860 * 23 21 19 25 25 H 1.48506 * 109.46919 * 145.06794 * 23 21 19 26 26 H 1.48501 * 109.47059 * 25.07392 * 23 21 19 27 27 C 1.47422 * 108.70835 * 358.58643 * 18 17 15 28 28 C 1.54917 * 104.83026 * 24.35411 * 27 18 17 29 29 H 1.08999 * 111.00460 * 81.10587 * 28 27 18 30 30 O 1.42899 * 111.00503 * 204.91739 * 28 27 18 31 31 H 1.09001 * 109.47113 * 299.10440 * 1 2 3 32 32 H 1.09002 * 109.46940 * 59.10836 * 1 2 3 33 33 H 1.09001 * 109.47003 * 179.10418 * 1 2 3 34 34 H 1.09002 * 109.46807 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47367 * 299.99779 * 3 2 1 36 36 H 1.08998 * 109.47393 * 60.00110 * 3 2 1 37 37 H 1.08997 * 109.47026 * 53.14882 * 6 4 2 38 38 H 1.09000 * 109.46867 * 173.14648 * 6 4 2 39 39 H 1.07993 * 126.12506 * 359.95610 * 8 7 6 40 40 H 1.07999 * 126.03605 * 180.02562 * 9 8 7 41 41 H 1.07997 * 125.90105 * 180.02562 * 10 9 8 42 42 H 0.96998 * 119.99830 * 0.02562 * 14 12 4 43 43 H 1.09002 * 109.99307 * 100.19820 * 17 15 14 44 44 H 1.09002 * 109.77594 * 339.02598 * 17 15 14 45 45 H 0.97000 * 119.99361 * 179.97438 * 22 21 19 46 46 H 1.08997 * 110.37358 * 143.19316 * 27 18 17 47 47 H 1.09002 * 110.36794 * 265.41050 * 27 18 17 48 48 H 0.96700 * 114.00488 * 298.54858 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 3.0460 -0.5171 1.2881 6 6 1.2026 -0.4161 2.3986 7 7 1.4612 0.9781 2.7668 8 6 0.5278 1.9295 2.9786 9 6 1.1723 3.0758 3.2974 10 6 2.5466 2.8160 3.2803 11 7 2.7206 1.5574 2.9682 12 6 1.8640 -2.2402 0.8544 13 8 1.0795 -2.6290 0.0151 14 7 2.6182 -3.1268 1.5339 15 6 2.4908 -4.5600 1.2583 16 1 2.2359 -4.7315 0.2125 17 6 1.4387 -5.2061 2.1844 18 7 1.9598 -6.5208 2.5863 19 6 1.3359 -7.4036 3.4268 20 1 0.4857 -7.0840 4.0111 21 6 1.7961 -8.7094 3.5277 22 7 2.7178 -9.1483 2.6970 23 14 1.1073 -9.8433 4.8426 24 1 1.9918 -9.8134 6.0351 25 1 1.0364 -11.2291 4.3136 26 1 -0.2540 -9.3891 5.2245 27 6 3.2624 -6.7340 1.9297 28 6 3.7959 -5.3096 1.6352 29 1 4.2554 -4.8735 2.5222 30 8 4.7137 -5.3227 0.5401 31 1 -0.3633 0.4999 0.8979 32 1 -0.3633 0.5276 -0.8819 33 1 -0.3633 -1.0275 -0.0161 34 1 3.0851 1.3423 -0.0005 35 1 1.6460 1.8948 -0.8900 36 1 1.6459 1.8948 0.8900 37 1 0.1380 -0.5499 2.2071 38 1 1.5102 -1.0704 3.2143 39 1 -0.5418 1.7993 2.9064 40 1 0.7076 4.0236 3.5255 41 1 3.3287 3.5297 3.4930 42 1 3.2453 -2.8159 2.2054 43 1 0.4966 -5.3284 1.6499 44 1 1.2894 -4.5815 3.0651 45 1 3.0396 -10.0606 2.7678 46 1 3.9420 -7.2630 2.5977 47 1 3.1329 -7.2916 1.0021 48 1 5.5019 -5.8614 0.6938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193737654.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:16 Heat of formation + Delta-G solvation = 59.653662 kcal Electronic energy + Delta-G solvation = -30371.820717 eV Core-core repulsion = 26272.935032 eV Total energy + Delta-G solvation = -4098.885685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.77396 -40.07267 -38.29937 -37.00022 -35.10409 -34.16115 -33.26418 -31.81908 -30.60783 -29.65730 -28.29634 -27.79295 -27.02080 -25.45136 -24.44511 -22.60012 -21.41332 -21.12012 -20.75355 -20.14174 -19.78403 -17.81417 -17.32638 -17.09613 -16.78288 -16.49403 -15.75680 -15.48614 -14.84111 -14.73420 -14.54530 -14.34688 -14.08342 -13.99992 -13.86047 -13.52467 -13.25068 -13.09155 -12.96136 -12.82469 -12.42800 -12.18874 -12.05642 -11.99373 -11.79760 -11.74870 -11.50544 -11.29635 -10.99458 -10.92329 -10.88282 -10.20261 -10.00808 -9.86044 -9.84722 -9.78014 -9.36373 -9.01241 -8.82056 -8.70680 -8.36112 -6.92033 -5.84935 -3.20343 1.56953 2.06595 2.56023 2.67108 3.07074 3.34205 3.39959 3.42112 3.82697 4.08325 4.36601 4.44470 4.50895 4.56003 4.67676 4.72942 4.91467 5.00403 5.09496 5.17476 5.22327 5.28780 5.35988 5.43119 5.44404 5.49181 5.57583 5.60068 5.70127 5.74317 5.80237 5.90453 6.04298 6.09921 6.33188 6.40931 6.60842 6.62600 6.64277 6.79189 6.87735 7.19861 7.39043 7.41407 7.62143 7.65582 8.05008 8.14545 8.33436 9.06945 9.68479 10.33987 11.27961 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016674 B = 0.002693 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.890032 B =10394.864572 C =10970.162662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.517 5.517 3 C 0.020 3.980 4 C 0.058 3.942 5 H 0.116 0.884 6 C 0.103 3.897 7 N -0.366 5.366 8 C 0.054 3.946 9 C -0.273 4.273 10 C 0.045 3.955 11 N -0.290 5.290 12 C 0.525 3.475 13 O -0.517 6.517 14 N -0.712 5.712 15 C 0.143 3.857 16 H 0.104 0.896 17 C 0.130 3.870 18 N -0.598 5.598 19 C -0.233 4.233 20 H 0.078 0.922 21 C -0.005 4.005 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.150 3.850 28 C 0.066 3.934 29 H 0.061 0.939 30 O -0.564 6.564 31 H 0.020 0.980 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.171 0.829 40 H 0.146 0.854 41 H 0.182 0.818 42 H 0.398 0.602 43 H 0.034 0.966 44 H 0.028 0.972 45 H 0.255 0.745 46 H 0.072 0.928 47 H 0.042 0.958 48 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.211 23.680 -0.050 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.239 5.239 3 C -0.128 4.128 4 C -0.055 4.055 5 H 0.134 0.866 6 C -0.021 4.021 7 N -0.149 5.149 8 C -0.092 4.092 9 C -0.303 4.303 10 C -0.142 4.142 11 N -0.111 5.111 12 C 0.308 3.692 13 O -0.391 6.391 14 N -0.364 5.364 15 C 0.039 3.961 16 H 0.122 0.878 17 C 0.003 3.997 18 N -0.325 5.325 19 C -0.361 4.361 20 H 0.096 0.904 21 C -0.202 4.202 22 N -0.564 5.564 23 Si 0.744 3.256 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.024 3.976 28 C 0.006 3.994 29 H 0.079 0.921 30 O -0.369 6.369 31 H 0.038 0.962 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.188 0.812 40 H 0.164 0.836 41 H 0.199 0.801 42 H 0.232 0.768 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.060 0.940 48 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.259 22.256 -1.577 22.314 hybrid contribution -0.517 0.205 2.166 2.236 sum -0.776 22.461 0.589 22.482 Atomic orbital electron populations 1.22659 0.86686 1.04047 0.99969 1.61815 1.08773 1.13673 1.39670 1.22610 1.00690 0.88306 1.01240 1.21976 1.01814 0.92873 0.88851 0.86582 1.22396 1.02786 0.78525 0.98353 1.48682 1.04212 1.09077 1.52892 1.22538 0.96274 0.89286 1.01125 1.21497 0.93593 0.99546 1.15625 1.23897 0.96982 0.93674 0.99598 1.77376 1.01552 1.09595 1.22590 1.19990 0.80972 0.86757 0.81472 1.90685 1.36302 1.79772 1.32325 1.45982 1.42379 1.06885 1.41118 1.22003 0.95065 0.77652 1.01430 0.87808 1.21644 0.94931 0.88261 0.94867 1.44262 1.18611 1.15433 1.54241 1.19036 1.12039 0.89961 1.15085 0.90391 1.24891 0.99595 0.96554 0.99130 1.69931 1.32587 1.16544 1.37310 0.86074 0.78449 0.80162 0.80910 1.21523 1.21623 1.20476 1.22013 0.87976 0.89732 0.97862 1.23598 0.88662 0.99305 0.87879 0.92094 1.86433 1.35113 1.73463 1.41876 0.96154 0.91180 0.88962 0.91482 0.91555 0.94166 0.87100 0.88515 0.81224 0.83591 0.80060 0.76780 0.94808 0.95371 0.93514 0.90972 0.94005 0.77529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 8.29 60.07 0.50 0.65 16 2 N -0.52 -6.12 4.69 -244.58 -1.15 -7.27 16 3 C 0.02 0.20 8.91 60.06 0.54 0.74 16 4 C 0.06 0.67 2.36 -68.87 -0.16 0.51 16 5 H 0.12 1.33 7.66 -51.93 -0.40 0.93 16 6 C 0.10 0.99 5.31 -4.04 -0.02 0.97 16 7 N -0.37 -3.47 2.13 -61.37 -0.13 -3.60 16 8 C 0.05 0.42 9.45 -17.22 -0.16 0.26 16 9 C -0.27 -2.06 10.66 -40.01 -0.43 -2.49 16 10 C 0.04 0.38 11.73 -17.36 -0.20 0.17 16 11 N -0.29 -3.04 11.37 30.62 0.35 -2.69 16 12 C 0.52 7.68 7.01 -10.99 -0.08 7.60 16 13 O -0.52 -9.43 14.18 5.55 0.08 -9.35 16 14 N -0.71 -10.29 5.11 -52.02 -0.27 -10.55 16 15 C 0.14 2.62 3.04 -66.09 -0.20 2.42 16 16 H 0.10 2.16 7.55 -51.93 -0.39 1.77 16 17 C 0.13 2.71 7.00 -3.06 -0.02 2.69 16 18 N -0.60 -14.89 3.39 -170.07 -0.58 -15.46 16 19 C -0.23 -6.35 10.23 -15.06 -0.15 -6.51 16 20 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 21 C 0.00 -0.13 5.40 -17.43 -0.09 -0.22 16 22 N -0.92 -26.22 10.74 55.49 0.60 -25.62 16 23 Si 0.91 21.56 29.56 -169.99 -5.03 16.54 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.15 3.48 5.13 -2.53 -0.01 3.46 16 28 C 0.07 1.20 4.06 -24.58 -0.10 1.10 16 29 H 0.06 1.01 8.01 -51.93 -0.42 0.60 16 30 O -0.56 -9.57 13.47 -35.23 -0.47 -10.04 16 31 H 0.02 0.18 5.42 -51.93 -0.28 -0.10 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.18 6.17 -51.93 -0.32 0.85 16 34 H 0.07 0.72 7.98 -51.93 -0.41 0.30 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.04 0.40 3.92 -51.93 -0.20 0.20 16 37 H 0.11 0.98 5.89 -51.93 -0.31 0.67 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.18 1.02 8.06 -52.49 -0.42 0.59 16 42 H 0.40 4.75 8.56 -40.82 -0.35 4.40 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.56 8.03 -51.93 -0.42 0.14 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.07 1.80 7.06 -51.93 -0.37 1.44 16 47 H 0.04 1.09 8.03 -51.93 -0.42 0.67 16 48 H 0.38 4.89 9.11 45.56 0.42 5.30 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -33.74 380.80 -7.84 -41.58 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.37 Total: 9.39 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -0.60 Total: 11.34 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: -1.18 Total: -65.20 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.40 Total: -19.39 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.74 -7.84 -41.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193737654.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.231 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds