Wall clock time and date at job start Tue Mar 31 2020 21:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46896 * 110.99672 * 2 1 4 4 C 1.46896 * 110.99825 * 123.95248 * 2 1 3 5 5 H 1.09003 * 109.46717 * 196.41777 * 4 2 1 6 6 C 1.53004 * 109.47076 * 316.41824 * 4 2 1 7 7 N 1.46498 * 109.47060 * 293.14662 * 6 4 2 8 8 C 1.34948 * 126.03662 * 126.44034 * 7 6 4 9 9 C 1.35316 * 107.74542 * 179.97438 * 8 7 6 10 10 C 1.39870 * 107.92258 * 359.97438 * 9 8 7 11 11 N 1.30837 * 108.19777 * 359.73935 * 10 9 8 12 12 C 1.50695 * 109.47126 * 76.41926 * 4 2 1 13 13 O 1.21284 * 120.00328 * 340.00018 * 12 4 2 14 14 N 1.34781 * 119.99951 * 159.99970 * 12 4 2 15 15 C 1.46505 * 120.00006 * 180.02562 * 14 12 4 16 16 H 1.08998 * 110.78026 * 31.75971 * 15 14 12 17 17 C 1.54339 * 110.84920 * 268.69273 * 15 14 12 18 18 N 1.47014 * 107.26312 * 219.67169 * 17 15 14 19 19 C 1.36939 * 125.64638 * 178.84624 * 18 17 15 20 20 H 1.07993 * 120.00176 * 347.52915 * 19 18 17 21 21 C 1.38819 * 119.99952 * 167.52180 * 19 18 17 22 22 N 1.31622 * 119.99630 * 351.34934 * 21 19 18 23 23 Si 1.86796 * 119.99847 * 171.34097 * 21 19 18 24 24 H 1.48499 * 109.47394 * 265.06860 * 23 21 19 25 25 H 1.48506 * 109.46919 * 145.06794 * 23 21 19 26 26 H 1.48501 * 109.47059 * 25.07392 * 23 21 19 27 27 C 1.47422 * 108.70835 * 358.58643 * 18 17 15 28 28 C 1.54917 * 104.83026 * 24.35411 * 27 18 17 29 29 H 1.08999 * 111.00460 * 81.10587 * 28 27 18 30 30 O 1.42899 * 111.00503 * 204.91739 * 28 27 18 31 31 H 1.09001 * 109.47113 * 299.10440 * 1 2 3 32 32 H 1.09002 * 109.46940 * 59.10836 * 1 2 3 33 33 H 1.09001 * 109.47003 * 179.10418 * 1 2 3 34 34 H 1.09002 * 109.46807 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47367 * 299.99779 * 3 2 1 36 36 H 1.08998 * 109.47393 * 60.00110 * 3 2 1 37 37 H 1.08997 * 109.47026 * 53.14882 * 6 4 2 38 38 H 1.09000 * 109.46867 * 173.14648 * 6 4 2 39 39 H 1.07993 * 126.12506 * 359.95610 * 8 7 6 40 40 H 1.07999 * 126.03605 * 180.02562 * 9 8 7 41 41 H 1.07997 * 125.90105 * 180.02562 * 10 9 8 42 42 H 0.96998 * 119.99830 * 0.02562 * 14 12 4 43 43 H 1.09002 * 109.99307 * 100.19820 * 17 15 14 44 44 H 1.09002 * 109.77594 * 339.02598 * 17 15 14 45 45 H 0.97000 * 119.99361 * 179.97438 * 22 21 19 46 46 H 1.08997 * 110.37358 * 143.19316 * 27 18 17 47 47 H 1.09002 * 110.36794 * 265.41050 * 27 18 17 48 48 H 0.96700 * 114.00488 * 298.54858 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 3.0460 -0.5171 1.2881 6 6 1.2026 -0.4161 2.3986 7 7 1.4612 0.9781 2.7668 8 6 0.5278 1.9295 2.9786 9 6 1.1723 3.0758 3.2974 10 6 2.5466 2.8160 3.2803 11 7 2.7206 1.5574 2.9682 12 6 1.8640 -2.2402 0.8544 13 8 1.0795 -2.6290 0.0151 14 7 2.6182 -3.1268 1.5339 15 6 2.4908 -4.5600 1.2583 16 1 2.2359 -4.7315 0.2125 17 6 1.4387 -5.2061 2.1844 18 7 1.9598 -6.5208 2.5863 19 6 1.3359 -7.4036 3.4268 20 1 0.4857 -7.0840 4.0111 21 6 1.7961 -8.7094 3.5277 22 7 2.7178 -9.1483 2.6970 23 14 1.1073 -9.8433 4.8426 24 1 1.9918 -9.8134 6.0351 25 1 1.0364 -11.2291 4.3136 26 1 -0.2540 -9.3891 5.2245 27 6 3.2624 -6.7340 1.9297 28 6 3.7959 -5.3096 1.6352 29 1 4.2554 -4.8735 2.5222 30 8 4.7137 -5.3227 0.5401 31 1 -0.3633 0.4999 0.8979 32 1 -0.3633 0.5276 -0.8819 33 1 -0.3633 -1.0275 -0.0161 34 1 3.0851 1.3423 -0.0005 35 1 1.6460 1.8948 -0.8900 36 1 1.6459 1.8948 0.8900 37 1 0.1380 -0.5499 2.2071 38 1 1.5102 -1.0704 3.2143 39 1 -0.5418 1.7993 2.9064 40 1 0.7076 4.0236 3.5255 41 1 3.3287 3.5297 3.4930 42 1 3.2453 -2.8159 2.2054 43 1 0.4966 -5.3284 1.6499 44 1 1.2894 -4.5815 3.0651 45 1 3.0396 -10.0606 2.7678 46 1 3.9420 -7.2630 2.5977 47 1 3.1329 -7.2916 1.0021 48 1 5.5019 -5.8614 0.6938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193737654.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:14 Heat of formation + Delta-G solvation = 31.860873 kcal Electronic energy + Delta-G solvation = -30373.025903 eV Core-core repulsion = 26272.935032 eV Total energy + Delta-G solvation = -4100.090870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.44792 -41.23663 -39.72171 -38.10058 -36.69358 -35.62065 -34.10438 -33.58534 -31.38427 -30.65399 -29.81975 -28.79783 -28.49737 -26.51322 -26.02864 -23.64236 -22.53715 -22.02586 -21.93084 -21.61745 -20.83164 -19.07643 -18.67507 -18.30736 -17.95188 -17.62417 -17.13116 -16.62636 -16.31271 -15.85422 -15.80374 -15.41986 -15.26069 -15.07552 -14.84115 -14.72601 -14.63369 -14.11219 -13.96927 -13.91359 -13.80872 -13.54250 -13.21372 -13.08406 -13.02072 -12.86383 -12.81690 -12.73020 -12.63459 -12.53579 -12.07856 -11.93519 -11.56611 -11.54068 -11.13371 -10.82451 -10.73780 -10.50729 -10.19779 -9.64115 -9.17469 -8.94372 -7.93084 -5.31487 0.94824 1.32183 1.46852 1.47779 1.57261 1.58128 1.93869 2.00003 2.46154 2.92676 3.04685 3.26243 3.30545 3.59178 3.61483 3.67455 3.86274 3.99464 4.03528 4.06580 4.16177 4.17786 4.25431 4.28839 4.43096 4.44862 4.54307 4.58701 4.66185 4.75253 4.83796 4.90676 4.92286 4.95146 5.06082 5.18860 5.28247 5.41708 5.45259 5.59678 5.75418 5.79473 5.95658 6.05420 6.11746 6.46849 6.78300 6.83004 7.00809 7.16453 7.66105 8.31424 9.18389 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016674 B = 0.002693 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.890032 B =10394.864572 C =10970.162662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.537 5.537 3 C 0.028 3.972 4 C 0.073 3.927 5 H 0.119 0.881 6 C 0.109 3.891 7 N -0.374 5.374 8 C 0.047 3.953 9 C -0.275 4.275 10 C 0.041 3.959 11 N -0.323 5.323 12 C 0.526 3.474 13 O -0.554 6.554 14 N -0.700 5.700 15 C 0.158 3.842 16 H 0.077 0.923 17 C 0.132 3.868 18 N -0.617 5.617 19 C -0.249 4.249 20 H 0.082 0.918 21 C -0.059 4.059 22 N -0.946 5.946 23 Si 0.981 3.019 24 H -0.282 1.282 25 H -0.295 1.295 26 H -0.268 1.268 27 C 0.157 3.843 28 C 0.090 3.910 29 H 0.090 0.910 30 O -0.568 6.568 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.193 0.807 40 H 0.167 0.833 41 H 0.204 0.796 42 H 0.414 0.586 43 H 0.015 0.985 44 H 0.048 0.952 45 H 0.251 0.749 46 H 0.050 0.950 47 H 0.003 0.997 48 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.359 26.124 1.332 26.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.261 5.261 3 C -0.119 4.119 4 C -0.040 4.040 5 H 0.137 0.863 6 C -0.015 4.015 7 N -0.157 5.157 8 C -0.098 4.098 9 C -0.304 4.304 10 C -0.145 4.145 11 N -0.145 5.145 12 C 0.311 3.689 13 O -0.431 6.431 14 N -0.353 5.353 15 C 0.052 3.948 16 H 0.095 0.905 17 C 0.006 3.994 18 N -0.345 5.345 19 C -0.377 4.377 20 H 0.100 0.900 21 C -0.253 4.253 22 N -0.594 5.594 23 Si 0.809 3.191 24 H -0.209 1.209 25 H -0.222 1.222 26 H -0.193 1.193 27 C 0.031 3.969 28 C 0.029 3.971 29 H 0.107 0.893 30 O -0.376 6.376 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.210 0.790 40 H 0.184 0.816 41 H 0.220 0.780 42 H 0.251 0.749 43 H 0.033 0.967 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.021 0.979 48 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -0.384 24.754 -0.176 24.758 hybrid contribution -0.486 -0.488 1.683 1.818 sum -0.870 24.266 1.507 24.329 Atomic orbital electron populations 1.22581 0.86128 1.02883 1.01336 1.61773 1.09524 1.14602 1.40165 1.22540 1.00194 0.87436 1.01777 1.21765 1.02329 0.90130 0.89825 0.86346 1.22266 1.02778 0.79212 0.97267 1.48620 1.04428 1.08990 1.53667 1.23033 0.97242 0.88993 1.00484 1.21810 0.93296 1.00296 1.14992 1.24390 0.98163 0.93435 0.98502 1.77347 1.02347 1.10697 1.24106 1.20591 0.79829 0.88050 0.80423 1.90681 1.37833 1.80640 1.33949 1.45766 1.42801 1.05113 1.41592 1.21507 0.94325 0.79798 0.99166 0.90533 1.21703 0.94852 0.87106 0.95757 1.44532 1.19493 1.16400 1.54050 1.19411 1.12195 0.90722 1.15419 0.90015 1.25725 1.00229 0.98053 1.01247 1.70123 1.33870 1.16542 1.38868 0.85034 0.78271 0.77568 0.78268 1.20896 1.22222 1.19292 1.21812 0.87364 0.92438 0.95301 1.23263 0.88886 0.95753 0.89159 0.89269 1.86404 1.35788 1.73826 1.41564 0.94036 0.90536 0.91309 0.92115 0.90910 0.93618 0.86360 0.88215 0.78961 0.81586 0.77957 0.74865 0.96698 0.93450 0.94005 0.93205 0.97877 0.75314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.29 127.69 1.06 1.42 16 2 N -0.54 -12.05 4.69 -927.72 -4.35 -16.40 16 3 C 0.03 0.53 8.91 127.69 1.14 1.67 16 4 C 0.07 1.57 2.36 44.17 0.10 1.68 16 5 H 0.12 2.53 7.66 -2.39 -0.02 2.51 16 6 C 0.11 1.88 5.31 86.38 0.46 2.34 16 7 N -0.37 -6.24 2.13 -348.07 -0.74 -6.98 16 8 C 0.05 0.62 9.45 83.54 0.79 1.41 16 9 C -0.27 -3.34 10.66 21.99 0.23 -3.11 16 10 C 0.04 0.59 11.73 85.24 1.00 1.59 16 11 N -0.32 -6.12 11.37 -57.02 -0.65 -6.76 16 12 C 0.53 15.03 7.01 87.65 0.61 15.64 16 13 O -0.55 -20.42 14.18 -3.04 -0.04 -20.46 16 14 N -0.70 -19.40 5.11 -436.89 -2.23 -21.63 16 15 C 0.16 5.76 3.04 46.18 0.14 5.90 16 16 H 0.08 3.26 7.55 -2.39 -0.02 3.24 16 17 C 0.13 5.55 7.00 86.74 0.61 6.16 16 18 N -0.62 -31.26 3.39 -691.96 -2.35 -33.60 16 19 C -0.25 -13.70 10.23 84.03 0.86 -12.84 16 20 H 0.08 4.32 7.84 -2.91 -0.02 4.30 16 21 C -0.06 -3.26 5.40 84.86 0.46 -2.80 16 22 N -0.95 -55.52 10.74 21.65 0.23 -55.29 16 23 Si 0.98 44.60 29.56 68.60 2.03 46.63 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 C 0.16 7.46 5.13 86.86 0.45 7.90 16 28 C 0.09 3.20 4.06 31.99 0.13 3.33 16 29 H 0.09 2.74 8.01 -2.39 -0.02 2.73 16 30 O -0.57 -18.69 13.47 -148.98 -2.01 -20.70 16 31 H 0.04 0.64 5.42 -2.39 -0.01 0.62 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.73 6.17 -2.39 -0.01 1.72 16 34 H 0.06 1.21 7.98 -2.39 -0.02 1.19 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.05 0.81 3.92 -2.39 -0.01 0.80 16 37 H 0.12 1.86 5.89 -2.39 -0.01 1.84 16 38 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.20 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.41 8.95 8.56 -92.71 -0.79 8.16 16 43 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.05 1.82 8.03 -2.39 -0.02 1.80 16 45 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 46 H 0.05 2.56 7.06 -2.39 -0.02 2.54 16 47 H 0.00 0.17 8.03 -2.39 -0.02 0.16 16 48 H 0.40 9.76 9.11 -74.06 -0.67 9.08 16 Total: -1.00 -74.48 380.80 -2.54 -77.02 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: -0.47 Total: 27.90 kcal Atomic # 6 Polarization: 22.26 SS G_CDS: 8.04 Total: 30.29 kcal Atomic # 7 Polarization: -130.60 SS G_CDS: -10.09 Total: -140.68 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -2.05 Total: -41.16 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -74.48 -2.54 -77.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193737654.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.881 kcal (2) G-P(sol) polarization free energy of solvation -74.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds