Wall clock time and date at job start Tue Mar 31 2020 21:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28598 * 124.62063 * 2 1 4 4 C 1.31382 * 108.72153 * 179.72197 * 3 2 1 5 5 C 1.39678 * 105.89626 * 0.42775 * 4 3 2 6 6 C 1.50697 * 127.04828 * 179.84433 * 5 4 3 7 7 C 1.52997 * 109.47466 * 124.70828 * 6 5 4 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.47501 * 118.75871 * 359.74091 * 10 8 7 12 12 C 1.53205 * 111.23671 * 221.50676 * 11 10 8 13 13 C 1.51543 * 109.43054 * 40.26227 * 12 11 10 14 14 O 1.42156 * 108.76368 * 268.50985 * 13 12 11 15 15 C 1.38013 * 119.43944 * 87.21501 * 14 13 12 16 16 H 1.09005 * 109.47013 * 56.57655 * 15 14 13 17 17 C 1.52998 * 109.46344 * 176.56800 * 15 14 13 18 18 N 1.46500 * 109.47407 * 300.00919 * 17 15 14 19 19 C 1.36937 * 120.00002 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99827 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99983 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99820 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00133 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46917 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47071 * 120.00275 * 23 21 19 26 26 H 1.48497 * 109.47198 * 240.00444 * 23 21 19 27 27 C 1.45120 * 118.75163 * 180.02562 * 10 8 7 28 28 N 1.28596 * 124.61996 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46848 * 269.99701 * 1 2 3 30 30 H 1.08996 * 109.47461 * 29.99666 * 1 2 3 31 31 H 1.09002 * 109.47013 * 150.00268 * 1 2 3 32 32 H 1.08001 * 127.04992 * 180.26935 * 4 3 2 33 33 H 1.09002 * 109.47120 * 4.70581 * 6 5 4 34 34 H 1.08998 * 109.46862 * 244.71383 * 6 5 4 35 35 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 36 36 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 37 37 H 1.09011 * 109.16339 * 342.01877 * 11 10 8 38 38 H 1.08994 * 109.17313 * 101.22453 * 11 10 8 39 39 H 1.08998 * 109.60720 * 280.22763 * 12 11 10 40 40 H 1.08995 * 109.42757 * 160.18603 * 12 11 10 41 41 H 1.08998 * 109.58498 * 148.72139 * 13 12 11 42 42 H 1.09006 * 109.58366 * 28.28954 * 13 12 11 43 43 H 1.08998 * 109.47252 * 60.01868 * 17 15 14 44 44 H 1.09001 * 109.46929 * 180.02562 * 17 15 14 45 45 H 0.97000 * 119.99821 * 0.02562 * 18 17 15 46 46 H 0.97001 * 119.99858 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.45938 * 210.72668 * 27 10 8 48 48 H 1.08996 * 109.46600 * 330.68936 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6984 0.0060 5 6 3.4591 -0.6984 -0.0001 6 6 4.6618 -1.6064 -0.0002 7 6 4.5701 -2.5744 1.1810 8 6 5.7726 -3.4828 1.1806 9 8 6.6197 -3.3669 0.3205 10 7 5.9070 -4.4232 2.1367 11 6 4.8638 -4.5355 3.1734 12 6 5.4793 -4.7670 4.5572 13 6 6.7166 -3.9054 4.7091 14 8 7.8491 -4.6528 4.2854 15 6 8.2070 -4.6451 2.9525 16 1 8.3679 -3.6177 2.6254 17 6 9.4962 -5.4475 2.7661 18 7 10.5670 -4.8435 3.5629 19 6 11.8207 -5.3941 3.5544 20 1 12.0203 -6.2734 2.9599 21 6 12.8351 -4.8221 4.3098 22 7 12.5917 -3.7507 5.0347 23 14 14.5456 -5.5727 4.2977 24 1 14.5578 -6.7623 3.4089 25 1 15.5219 -4.5717 3.7976 26 1 14.9170 -5.9806 5.6764 27 6 7.0759 -5.2829 2.1107 28 7 2.1955 -1.0583 -0.0005 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 4.3210 1.3491 0.0117 33 1 5.5686 -1.0082 0.0898 34 1 4.6904 -2.1715 -0.9318 35 1 3.6633 -3.1726 1.0911 36 1 4.5416 -2.0092 2.1126 37 1 4.2774 -3.6168 3.1919 38 1 4.2085 -5.3725 2.9326 39 1 5.7524 -5.8167 4.6651 40 1 4.7542 -4.4996 5.3258 41 1 6.8371 -3.6201 5.7542 42 1 6.6173 -3.0115 4.0932 43 1 9.3353 -6.4748 3.0929 44 1 9.7792 -5.4410 1.7134 45 1 10.3876 -4.0539 4.0971 46 1 13.3005 -3.3512 5.5629 47 1 6.8193 -6.2573 2.5265 48 1 7.4142 -5.4051 1.0818 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201422229.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:51 Heat of formation + Delta-G solvation = 50.170925 kcal Electronic energy + Delta-G solvation = -29365.095362 eV Core-core repulsion = 25265.798476 eV Total energy + Delta-G solvation = -4099.296887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.86077 -40.59144 -38.54008 -35.64649 -35.23224 -34.53173 -33.30104 -32.83222 -31.95671 -30.86860 -29.16810 -27.93532 -26.68360 -25.54830 -24.33378 -22.69721 -22.50944 -21.68285 -20.96431 -20.78562 -18.92631 -17.82030 -17.32437 -17.14707 -17.05451 -16.49038 -16.29736 -16.03256 -15.24385 -15.02980 -14.73557 -14.50398 -14.15319 -13.91854 -13.73448 -13.51758 -13.34607 -13.21695 -13.04429 -12.96789 -12.55155 -12.43651 -12.26412 -11.97696 -11.89510 -11.55845 -11.30561 -11.24859 -11.09887 -10.94600 -10.77451 -10.75240 -10.53762 -10.21728 -9.97830 -9.79170 -9.62843 -9.41630 -9.35283 -8.79277 -8.52055 -6.79844 -5.65497 -2.93307 1.47528 1.98413 2.09932 2.56037 2.89495 3.50412 3.55435 3.58088 3.73187 4.00197 4.21718 4.50603 4.53567 4.57437 4.62304 4.67987 4.74110 4.79789 4.83092 4.95899 4.99773 5.00298 5.26143 5.28222 5.38989 5.41485 5.48142 5.51571 5.55201 5.64486 5.67921 5.73931 5.84003 5.87919 5.98513 6.01457 6.04297 6.14115 6.35159 6.38759 6.53669 6.71364 6.83736 7.23555 7.79093 8.00301 8.05378 8.11755 8.52999 9.64514 10.23476 10.59601 11.57547 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.002142 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.471696 B =13066.608491 C =13610.484070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.162 5.162 3 N -0.292 5.292 4 C -0.020 4.020 5 C 0.007 3.993 6 C -0.015 4.015 7 C -0.133 4.133 8 C 0.507 3.493 9 O -0.532 6.532 10 N -0.610 5.610 11 C 0.106 3.894 12 C -0.168 4.168 13 C 0.074 3.926 14 O -0.367 6.367 15 C 0.089 3.911 16 H 0.051 0.949 17 C 0.166 3.834 18 N -0.725 5.725 19 C -0.235 4.235 20 H 0.071 0.929 21 C -0.016 4.016 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.081 3.919 28 N -0.288 5.288 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.199 0.801 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.046 0.954 43 H 0.026 0.974 44 H 0.035 0.965 45 H 0.387 0.613 46 H 0.253 0.747 47 H 0.082 0.918 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.290 5.396 -7.291 30.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.063 5.063 3 N -0.133 5.133 4 C -0.202 4.202 5 C -0.156 4.156 6 C -0.054 4.054 7 C -0.173 4.173 8 C 0.295 3.705 9 O -0.408 6.408 10 N -0.343 5.343 11 C -0.017 4.017 12 C -0.206 4.206 13 C -0.003 4.003 14 O -0.285 6.285 15 C 0.029 3.971 16 H 0.069 0.931 17 C 0.038 3.962 18 N -0.370 5.370 19 C -0.366 4.366 20 H 0.089 0.911 21 C -0.212 4.212 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.043 4.043 28 N -0.130 5.130 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.216 0.784 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.052 0.948 45 H 0.221 0.779 46 H 0.063 0.937 47 H 0.100 0.900 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -30.044 5.236 -7.675 31.448 hybrid contribution 1.390 0.084 0.185 1.405 sum -28.654 5.321 -7.490 30.091 Atomic orbital electron populations 1.22103 0.70343 1.05777 1.04901 1.47901 1.08831 0.99402 1.50137 1.74057 1.04042 1.16072 1.19120 1.24735 0.94454 0.94779 1.06230 1.23220 0.92531 0.94266 1.05585 1.19654 0.91860 0.94912 0.99011 1.21658 0.97478 0.97665 1.00541 1.20711 0.87684 0.80882 0.81210 1.90739 1.43284 1.69555 1.37207 1.47947 1.23317 1.35326 1.27742 1.21918 0.89551 1.02454 0.87752 1.22457 0.99062 1.03109 0.95961 1.22112 0.84937 0.93159 1.00109 1.86442 1.46377 1.70220 1.25486 1.22261 0.93788 0.99451 0.81618 0.93070 1.20617 0.85369 0.94970 0.95278 1.42218 1.06055 1.34094 1.54585 1.19288 0.86622 1.08378 1.22351 0.91134 1.24740 0.98205 0.98179 1.00083 1.69693 1.32196 1.22816 1.33423 0.86108 0.84772 0.78175 0.77110 1.20580 1.21970 1.21966 1.22407 0.85397 0.93603 1.02887 1.73979 1.03633 1.15629 1.19806 0.89298 0.88014 0.87984 0.78430 0.88534 0.89125 0.88456 0.88882 0.89966 0.91504 0.89892 0.89751 0.89329 0.93566 0.95638 0.94768 0.77878 0.93705 0.89980 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.42 11.57 59.84 0.69 1.11 16 2 N -0.16 -1.44 4.35 -16.64 -0.07 -1.52 16 3 N -0.29 -2.94 12.05 30.68 0.37 -2.57 16 4 C -0.02 -0.18 12.15 -17.21 -0.21 -0.39 16 5 C 0.01 0.07 6.61 -82.25 -0.54 -0.48 16 6 C -0.01 -0.14 5.10 -27.89 -0.14 -0.28 16 7 C -0.13 -1.21 4.02 -27.88 -0.11 -1.32 16 8 C 0.51 6.43 7.63 -10.98 -0.08 6.35 16 9 O -0.53 -8.77 15.41 5.56 0.09 -8.69 16 10 N -0.61 -7.33 2.20 -172.74 -0.38 -7.71 16 11 C 0.11 0.92 5.96 -3.39 -0.02 0.90 16 12 C -0.17 -1.60 5.78 -27.36 -0.16 -1.76 16 13 C 0.07 0.97 6.37 36.42 0.23 1.20 16 14 O -0.37 -6.61 9.18 -26.53 -0.24 -6.85 16 15 C 0.09 1.60 2.73 -25.81 -0.07 1.53 16 16 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 17 C 0.17 3.58 5.95 -4.04 -0.02 3.56 16 18 N -0.73 -19.62 5.49 -59.91 -0.33 -19.95 16 19 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 20 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 21 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 22 N -0.93 -29.31 13.06 55.49 0.72 -28.59 16 23 Si 0.91 23.15 29.55 -169.99 -5.02 18.13 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 27 C 0.08 1.16 4.86 -3.86 -0.02 1.14 16 28 N -0.29 -2.90 12.04 33.71 0.41 -2.50 16 29 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.20 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.10 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.10 0.79 8.05 -51.93 -0.42 0.37 16 36 H 0.09 0.74 7.40 -51.93 -0.38 0.36 16 37 H 0.08 0.56 5.88 -51.92 -0.31 0.25 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.39 11.15 7.53 -40.82 -0.31 10.85 16 46 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 48 H 0.09 1.43 7.27 -51.93 -0.38 1.05 16 LS Contribution 392.20 15.07 5.91 5.91 Total: -1.00 -37.88 392.20 -6.89 -44.76 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -7.63 Total: 5.65 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -0.70 Total: 3.93 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: 0.72 Total: -62.84 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.16 Total: -15.54 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.88 -6.89 -44.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201422229.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.936 kcal (2) G-P(sol) polarization free energy of solvation -37.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds