Wall clock time and date at job start Tue Mar 31 2020 21:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28598 * 124.62063 * 2 1 4 4 C 1.31382 * 108.72153 * 179.72197 * 3 2 1 5 5 C 1.39678 * 105.89626 * 0.42775 * 4 3 2 6 6 C 1.50697 * 127.04828 * 179.84433 * 5 4 3 7 7 C 1.52997 * 109.47466 * 124.70828 * 6 5 4 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.47501 * 118.75871 * 359.74091 * 10 8 7 12 12 C 1.53205 * 111.23671 * 221.50676 * 11 10 8 13 13 C 1.51543 * 109.43054 * 40.26227 * 12 11 10 14 14 O 1.42156 * 108.76368 * 268.50985 * 13 12 11 15 15 C 1.38013 * 119.43944 * 87.21501 * 14 13 12 16 16 H 1.09005 * 109.47013 * 56.57655 * 15 14 13 17 17 C 1.52998 * 109.46344 * 176.56800 * 15 14 13 18 18 N 1.46500 * 109.47407 * 300.00919 * 17 15 14 19 19 C 1.36937 * 120.00002 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99827 * 0.02562 * 19 18 17 21 21 C 1.38811 * 119.99983 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99820 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00133 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46917 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47071 * 120.00275 * 23 21 19 26 26 H 1.48497 * 109.47198 * 240.00444 * 23 21 19 27 27 C 1.45120 * 118.75163 * 180.02562 * 10 8 7 28 28 N 1.28596 * 124.61996 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46848 * 269.99701 * 1 2 3 30 30 H 1.08996 * 109.47461 * 29.99666 * 1 2 3 31 31 H 1.09002 * 109.47013 * 150.00268 * 1 2 3 32 32 H 1.08001 * 127.04992 * 180.26935 * 4 3 2 33 33 H 1.09002 * 109.47120 * 4.70581 * 6 5 4 34 34 H 1.08998 * 109.46862 * 244.71383 * 6 5 4 35 35 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 36 36 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 37 37 H 1.09011 * 109.16339 * 342.01877 * 11 10 8 38 38 H 1.08994 * 109.17313 * 101.22453 * 11 10 8 39 39 H 1.08998 * 109.60720 * 280.22763 * 12 11 10 40 40 H 1.08995 * 109.42757 * 160.18603 * 12 11 10 41 41 H 1.08998 * 109.58498 * 148.72139 * 13 12 11 42 42 H 1.09006 * 109.58366 * 28.28954 * 13 12 11 43 43 H 1.08998 * 109.47252 * 60.01868 * 17 15 14 44 44 H 1.09001 * 109.46929 * 180.02562 * 17 15 14 45 45 H 0.97000 * 119.99821 * 0.02562 * 18 17 15 46 46 H 0.97001 * 119.99858 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.45938 * 210.72668 * 27 10 8 48 48 H 1.08996 * 109.46600 * 330.68936 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6984 0.0060 5 6 3.4591 -0.6984 -0.0001 6 6 4.6618 -1.6064 -0.0002 7 6 4.5701 -2.5744 1.1810 8 6 5.7726 -3.4828 1.1806 9 8 6.6197 -3.3669 0.3205 10 7 5.9070 -4.4232 2.1367 11 6 4.8638 -4.5355 3.1734 12 6 5.4793 -4.7670 4.5572 13 6 6.7166 -3.9054 4.7091 14 8 7.8491 -4.6528 4.2854 15 6 8.2070 -4.6451 2.9525 16 1 8.3679 -3.6177 2.6254 17 6 9.4962 -5.4475 2.7661 18 7 10.5670 -4.8435 3.5629 19 6 11.8207 -5.3941 3.5544 20 1 12.0203 -6.2734 2.9599 21 6 12.8351 -4.8221 4.3098 22 7 12.5917 -3.7507 5.0347 23 14 14.5456 -5.5727 4.2977 24 1 14.5578 -6.7623 3.4089 25 1 15.5219 -4.5717 3.7976 26 1 14.9170 -5.9806 5.6764 27 6 7.0759 -5.2829 2.1107 28 7 2.1955 -1.0583 -0.0005 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 4.3210 1.3491 0.0117 33 1 5.5686 -1.0082 0.0898 34 1 4.6904 -2.1715 -0.9318 35 1 3.6633 -3.1726 1.0911 36 1 4.5416 -2.0092 2.1126 37 1 4.2774 -3.6168 3.1919 38 1 4.2085 -5.3725 2.9326 39 1 5.7524 -5.8167 4.6651 40 1 4.7542 -4.4996 5.3258 41 1 6.8371 -3.6201 5.7542 42 1 6.6173 -3.0115 4.0932 43 1 9.3353 -6.4748 3.0929 44 1 9.7792 -5.4410 1.7134 45 1 10.3876 -4.0539 4.0971 46 1 13.3005 -3.3512 5.5629 47 1 6.8193 -6.2573 2.5265 48 1 7.4142 -5.4051 1.0818 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201422229.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:50 Heat of formation + Delta-G solvation = 22.613474 kcal Electronic energy + Delta-G solvation = -29366.290343 eV Core-core repulsion = 25265.798476 eV Total energy + Delta-G solvation = -4100.491868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.51800 -41.65557 -39.74323 -36.90688 -36.22632 -35.90622 -34.34586 -33.87314 -32.72732 -32.60880 -30.41623 -28.80843 -27.71876 -26.72833 -25.64369 -24.16868 -23.29032 -22.78195 -22.27710 -21.58049 -19.86280 -19.24955 -18.60485 -18.04239 -17.77664 -17.69665 -17.50154 -17.07532 -16.48700 -16.28227 -15.79001 -15.56860 -15.29570 -15.14787 -14.79192 -14.73571 -14.45971 -14.27079 -13.97562 -13.80458 -13.61985 -13.48677 -13.32846 -13.11681 -13.03894 -12.79102 -12.68649 -12.54369 -12.25955 -12.08221 -11.97334 -11.96750 -11.80967 -11.80258 -11.44680 -11.24396 -10.98270 -10.83964 -10.53010 -10.06146 -9.62142 -8.99938 -7.93324 -5.22885 0.80486 1.39595 1.47184 1.49409 1.52369 1.58454 1.59760 1.97042 2.57013 2.74737 3.11685 3.39994 3.45708 3.66226 3.77094 3.88133 4.00313 4.07583 4.10261 4.13519 4.21446 4.30468 4.33352 4.35155 4.38839 4.44575 4.49448 4.56987 4.59355 4.61101 4.72352 4.77602 4.82927 4.88939 4.90212 5.02693 5.11324 5.14132 5.15451 5.21958 5.30833 5.48439 5.54756 5.78281 6.27349 6.30101 6.77849 7.14094 7.33176 7.33700 8.08405 8.33693 9.30798 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.002142 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.471696 B =13066.608491 C =13610.484070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.161 5.161 3 N -0.310 5.310 4 C -0.029 4.029 5 C -0.003 4.003 6 C -0.009 4.009 7 C -0.119 4.119 8 C 0.503 3.497 9 O -0.578 6.578 10 N -0.609 5.609 11 C 0.101 3.899 12 C -0.157 4.157 13 C 0.064 3.936 14 O -0.397 6.397 15 C 0.105 3.895 16 H 0.022 0.978 17 C 0.162 3.838 18 N -0.740 5.740 19 C -0.246 4.246 20 H 0.078 0.922 21 C -0.080 4.080 22 N -0.971 5.971 23 Si 0.979 3.021 24 H -0.264 1.264 25 H -0.293 1.293 26 H -0.291 1.291 27 C 0.094 3.906 28 N -0.299 5.299 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.217 0.783 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.119 0.881 41 H 0.093 0.907 42 H 0.044 0.956 43 H 0.032 0.968 44 H 0.035 0.965 45 H 0.374 0.626 46 H 0.251 0.749 47 H 0.099 0.901 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.627 4.716 -7.057 32.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.063 5.063 3 N -0.152 5.152 4 C -0.210 4.210 5 C -0.164 4.164 6 C -0.049 4.049 7 C -0.159 4.159 8 C 0.293 3.707 9 O -0.458 6.458 10 N -0.342 5.342 11 C -0.019 4.019 12 C -0.195 4.195 13 C -0.012 4.012 14 O -0.316 6.316 15 C 0.045 3.955 16 H 0.040 0.960 17 C 0.035 3.965 18 N -0.382 5.382 19 C -0.377 4.377 20 H 0.096 0.904 21 C -0.272 4.272 22 N -0.622 5.622 23 Si 0.808 3.192 24 H -0.189 1.189 25 H -0.220 1.220 26 H -0.218 1.218 27 C -0.030 4.030 28 N -0.142 5.142 29 H 0.124 0.876 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.234 0.766 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.137 0.863 41 H 0.111 0.889 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.206 0.794 46 H 0.060 0.940 47 H 0.118 0.882 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -32.444 4.527 -7.446 33.594 hybrid contribution 2.000 0.321 0.125 2.030 sum -30.444 4.848 -7.320 31.684 Atomic orbital electron populations 1.22544 0.67977 1.07263 1.06511 1.48414 1.10154 0.98785 1.48922 1.74044 1.04514 1.16799 1.19857 1.25116 0.94959 0.95038 1.05910 1.23196 0.92504 0.94457 1.06286 1.19540 0.91811 0.94828 0.98733 1.21615 0.96108 0.97074 1.01137 1.21370 0.88080 0.80830 0.80461 1.90721 1.45154 1.70784 1.39107 1.48059 1.23039 1.34598 1.28475 1.22232 0.88739 1.04923 0.86044 1.22376 0.97839 1.01613 0.97673 1.22405 0.85139 0.93581 1.00063 1.86362 1.48843 1.71231 1.25208 1.21880 0.93656 0.97367 0.82646 0.96033 1.20769 0.85953 0.95495 0.94315 1.42417 1.06852 1.33882 1.55039 1.19729 0.87725 1.08400 1.21895 0.90394 1.25658 1.02431 0.98923 1.00179 1.69863 1.33326 1.24421 1.34543 0.84985 0.79392 0.77678 0.77163 1.18859 1.21986 1.21825 1.22071 0.85312 0.94362 1.01295 1.73931 1.03867 1.16285 1.20139 0.87596 0.86620 0.86520 0.76633 0.88965 0.90218 0.86628 0.87142 0.87394 0.88999 0.90766 0.86288 0.88939 0.93752 0.95031 0.94739 0.79444 0.94028 0.88250 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.52 11.57 127.77 1.48 2.00 16 2 N -0.16 -2.59 4.35 -206.56 -0.90 -3.49 16 3 N -0.31 -5.87 12.05 -56.86 -0.69 -6.55 16 4 C -0.03 -0.51 12.15 85.11 1.03 0.53 16 5 C 0.00 -0.05 6.61 42.97 0.28 0.24 16 6 C -0.01 -0.17 5.10 29.85 0.15 -0.02 16 7 C -0.12 -1.93 4.02 29.85 0.12 -1.81 16 8 C 0.50 12.33 7.63 87.66 0.67 13.00 16 9 O -0.58 -19.49 15.41 -3.03 -0.05 -19.54 16 10 N -0.61 -13.71 2.20 -818.80 -1.80 -15.51 16 11 C 0.10 1.40 5.96 86.26 0.51 1.91 16 12 C -0.16 -2.53 5.78 30.19 0.17 -2.35 16 13 C 0.06 1.62 6.37 71.50 0.46 2.08 16 14 O -0.40 -14.43 9.18 -117.84 -1.08 -15.52 16 15 C 0.10 3.87 2.73 31.19 0.09 3.96 16 16 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 17 C 0.16 7.17 5.95 86.38 0.51 7.68 16 18 N -0.74 -41.22 5.49 -343.46 -1.89 -43.10 16 19 C -0.25 -14.61 9.99 84.03 0.84 -13.77 16 20 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 21 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 22 N -0.97 -62.43 13.06 21.65 0.28 -62.15 16 23 Si 0.98 48.07 29.55 68.60 2.03 50.10 16 24 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 26 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 27 C 0.09 2.67 4.86 87.24 0.42 3.10 16 28 N -0.30 -5.51 12.04 -47.25 -0.57 -6.08 16 29 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 30 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.22 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.09 1.72 8.09 -2.39 -0.02 1.70 16 34 H 0.08 1.61 8.10 -2.39 -0.02 1.59 16 35 H 0.12 1.50 8.05 -2.39 -0.02 1.48 16 36 H 0.11 1.45 7.40 -2.39 -0.02 1.43 16 37 H 0.11 0.98 5.88 -2.38 -0.01 0.96 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.38 8.01 -2.39 -0.02 1.36 16 40 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.04 1.13 7.39 -2.38 -0.02 1.11 16 43 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.37 22.45 7.53 -92.71 -0.70 21.75 16 46 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 47 H 0.10 2.47 8.11 -2.39 -0.02 2.45 16 48 H 0.08 2.52 7.27 -2.39 -0.02 2.50 16 Total: -1.00 -84.21 392.20 2.82 -81.39 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.27 Total: 28.30 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 7.21 Total: 12.16 kcal Atomic # 7 Polarization: -131.33 SS G_CDS: -5.56 Total: -136.88 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -1.13 Total: -35.05 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -84.21 2.82 -81.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201422229.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.002 kcal (2) G-P(sol) polarization free energy of solvation -84.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds