Wall clock time and date at job start Tue Mar 31 2020 20:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35315 * 125.87119 * 2 1 4 4 C 1.35352 * 106.17556 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.75166 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47466 * 124.99908 * 5 4 3 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.47501 * 118.75871 * 359.74091 * 9 7 6 11 11 C 1.53205 * 111.23671 * 221.50676 * 10 9 7 12 12 C 1.51543 * 109.43054 * 40.26227 * 11 10 9 13 13 O 1.42156 * 108.76368 * 268.50985 * 12 11 10 14 14 C 1.38013 * 119.43944 * 87.21501 * 13 12 11 15 15 H 1.09005 * 109.47013 * 56.57655 * 14 13 12 16 16 C 1.52998 * 109.46344 * 176.56800 * 14 13 12 17 17 N 1.46500 * 109.47407 * 300.00919 * 16 14 13 18 18 C 1.36937 * 120.00002 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99827 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99983 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99820 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00133 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46917 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47071 * 120.00275 * 22 20 18 25 25 H 1.48497 * 109.47198 * 240.00444 * 22 20 18 26 26 C 1.45120 * 118.75163 * 180.02562 * 9 7 6 27 27 N 1.33773 * 106.49722 * 0.25837 * 4 3 2 28 28 N 1.28641 * 108.88335 * 359.56739 * 27 4 3 29 29 H 1.09005 * 109.46583 * 89.99893 * 1 2 3 30 30 H 1.08990 * 109.47500 * 210.00188 * 1 2 3 31 31 H 1.09007 * 109.46811 * 330.00728 * 1 2 3 32 32 H 1.07998 * 126.91025 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.47120 * 4.99661 * 5 4 3 34 34 H 1.08998 * 109.46862 * 245.00463 * 5 4 3 35 35 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 36 36 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 37 37 H 1.09011 * 109.16339 * 342.01877 * 10 9 7 38 38 H 1.08994 * 109.17313 * 101.22453 * 10 9 7 39 39 H 1.08998 * 109.60720 * 280.22763 * 11 10 9 40 40 H 1.08995 * 109.42757 * 160.18603 * 11 10 9 41 41 H 1.08998 * 109.58498 * 148.72139 * 12 11 10 42 42 H 1.09006 * 109.58366 * 28.28954 * 12 11 10 43 43 H 1.08998 * 109.47252 * 60.01868 * 16 14 13 44 44 H 1.09001 * 109.46929 * 180.02562 * 16 14 13 45 45 H 0.97000 * 119.99821 * 0.02562 * 17 16 14 46 46 H 0.97001 * 119.99858 * 179.97438 * 21 20 18 47 47 H 1.08996 * 109.45938 * 210.72668 * 26 9 7 48 48 H 1.08996 * 109.46600 * 330.68936 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2579 1.0965 0.0000 4 6 3.5323 0.6403 0.0006 5 6 4.7881 1.4732 0.0014 6 6 5.6699 1.0655 1.1833 7 6 6.9261 1.8980 1.1837 8 8 7.0988 2.7354 0.3235 9 7 7.8570 1.7127 2.1405 10 6 7.6156 0.6916 3.1773 11 6 8.0373 1.1956 4.5613 12 6 7.6354 2.6489 4.7126 13 8 8.7169 3.4688 4.2895 14 6 8.8295 3.8086 2.9566 15 1 7.9142 4.3015 2.6288 16 6 10.0147 4.7581 2.7710 17 7 9.7999 5.9689 3.5674 18 6 10.7357 6.9686 3.5594 19 1 11.6318 6.8646 2.9656 20 6 10.5325 8.1155 4.3144 21 7 9.4405 8.2419 5.0384 22 14 11.8086 9.4796 4.3029 23 1 12.9354 9.0958 3.4151 24 1 11.1891 10.7328 3.8021 25 1 12.3156 9.6948 5.6820 26 6 9.0561 2.5297 2.1153 27 7 3.4576 -0.6953 -0.0049 28 7 2.2191 -1.0431 0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 1.9382 2.1281 0.0004 33 1 4.5250 2.5272 0.0909 34 1 5.3314 1.3123 -0.9298 35 1 5.9330 0.0115 1.0938 36 1 5.1265 1.2265 2.1145 37 1 6.5543 0.4436 3.1950 38 1 8.1877 -0.2045 2.9372 39 1 9.1180 1.1046 4.6700 40 1 7.5437 0.6006 5.3296 41 1 7.4055 2.8575 5.7575 42 1 6.7598 2.8520 4.0959 43 1 10.9300 4.2652 3.0986 44 1 10.1034 5.0269 1.7183 45 1 8.9952 6.0620 4.1009 46 1 9.2987 9.0432 5.5663 47 1 9.8896 1.9641 2.5318 48 1 9.2845 2.8080 1.0865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202234733.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:42 Heat of formation + Delta-G solvation = 39.617020 kcal Electronic energy + Delta-G solvation = -29317.598496 eV Core-core repulsion = 25217.843957 eV Total energy + Delta-G solvation = -4099.754539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.59258 -40.56166 -38.51809 -35.63433 -35.51818 -34.54089 -33.81317 -32.79159 -30.89591 -30.70706 -28.85256 -28.26300 -26.75972 -25.67483 -24.39033 -22.56490 -22.44578 -21.66785 -21.18278 -20.84972 -18.89782 -17.77639 -17.26402 -17.07778 -16.96134 -16.46585 -16.27403 -16.02366 -15.27992 -15.10116 -14.73779 -14.36517 -14.21796 -13.98743 -13.84989 -13.58407 -13.34689 -13.17546 -13.04425 -12.78764 -12.54389 -12.46711 -12.25328 -12.02570 -11.84738 -11.60732 -11.52890 -11.27621 -10.99643 -10.93539 -10.77309 -10.75132 -10.41449 -10.20563 -9.97298 -9.77703 -9.62924 -9.44920 -9.33547 -8.79433 -8.49563 -6.79964 -5.65830 -2.93514 1.21860 1.96346 2.17869 2.59557 2.93050 3.50070 3.55168 3.57790 3.89006 4.01683 4.14528 4.30201 4.42667 4.60593 4.63884 4.67195 4.70675 4.72385 4.77742 4.88206 5.00836 5.03981 5.22216 5.29822 5.33641 5.40941 5.44396 5.52654 5.58857 5.65398 5.67934 5.70858 5.80547 5.89415 5.96254 6.03044 6.05917 6.15486 6.16151 6.38988 6.56400 6.72002 6.84494 7.26826 7.78959 8.06567 8.14702 8.16130 8.52747 9.64248 10.23315 10.59486 11.57259 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.002159 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.989797 B =12963.114424 C =13572.395690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.296 5.296 3 C -0.047 4.047 4 C -0.016 4.016 5 C -0.017 4.017 6 C -0.133 4.133 7 C 0.507 3.493 8 O -0.533 6.533 9 N -0.610 5.610 10 C 0.105 3.895 11 C -0.168 4.168 12 C 0.074 3.926 13 O -0.368 6.368 14 C 0.089 3.911 15 H 0.051 0.949 16 C 0.166 3.834 17 N -0.725 5.725 18 C -0.234 4.234 19 H 0.071 0.929 20 C -0.017 4.017 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.081 3.919 27 N -0.265 5.265 28 N -0.089 5.089 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.192 0.808 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.026 0.974 44 H 0.035 0.965 45 H 0.387 0.613 46 H 0.253 0.747 47 H 0.082 0.918 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.609 -21.049 -7.199 29.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.090 5.090 3 C -0.197 4.197 4 C -0.154 4.154 5 C -0.057 4.057 6 C -0.173 4.173 7 C 0.295 3.705 8 O -0.410 6.410 9 N -0.343 5.343 10 C -0.017 4.017 11 C -0.206 4.206 12 C -0.003 4.003 13 O -0.285 6.285 14 C 0.029 3.971 15 H 0.069 0.931 16 C 0.037 3.963 17 N -0.370 5.370 18 C -0.366 4.366 19 H 0.089 0.911 20 C -0.212 4.212 21 N -0.582 5.582 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.043 4.043 27 N -0.132 5.132 28 N -0.068 5.068 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.209 0.791 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.052 0.948 45 H 0.221 0.779 46 H 0.063 0.937 47 H 0.100 0.900 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.229 -22.019 -7.578 29.573 hybrid contribution -0.159 1.740 0.149 1.754 sum -18.389 -20.279 -7.429 28.365 Atomic orbital electron populations 1.22279 0.72679 1.06005 1.05049 1.47238 1.09434 1.04981 1.47324 1.23468 0.90863 0.94826 1.10586 1.22047 0.95382 0.91446 1.06553 1.19625 0.89334 0.97597 0.99140 1.21634 0.94042 1.01252 1.00360 1.20735 0.84844 0.83712 0.81160 1.90731 1.78113 1.34883 1.37251 1.47946 1.20450 1.38191 1.27729 1.21928 1.01810 0.90316 0.87676 1.22456 1.03712 0.98399 0.96018 1.22110 0.89531 0.88586 1.00060 1.86440 1.47905 1.68719 1.25481 1.22256 1.00079 0.93124 0.81633 0.93130 1.20620 0.93296 0.87063 0.95272 1.42220 1.24733 1.15356 1.54645 1.19293 0.99565 0.95375 1.22344 0.91126 1.24739 0.97863 0.98533 1.00103 1.69694 1.26593 1.28391 1.33501 0.86107 0.80689 0.82250 0.77117 1.20572 1.21982 1.21967 1.22402 0.86449 0.92587 1.02862 1.75047 1.09393 1.12080 1.16651 1.78310 0.96481 1.12166 1.19850 0.89048 0.88014 0.88188 0.79084 0.89129 0.89152 0.88149 0.88999 0.89883 0.91416 0.89898 0.89731 0.89358 0.93613 0.95608 0.94766 0.77892 0.93722 0.89969 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.17 11.39 59.85 0.68 0.85 16 2 N -0.30 -2.17 3.74 -68.05 -0.25 -2.43 16 3 C -0.05 -0.34 11.54 -17.05 -0.20 -0.54 16 4 C -0.02 -0.16 6.50 -82.78 -0.54 -0.70 16 5 C -0.02 -0.17 5.08 -27.89 -0.14 -0.31 16 6 C -0.13 -1.27 4.02 -27.88 -0.11 -1.39 16 7 C 0.51 6.63 7.63 -10.98 -0.08 6.54 16 8 O -0.53 -8.96 15.41 5.56 0.09 -8.87 16 9 N -0.61 -7.56 2.20 -172.74 -0.38 -7.94 16 10 C 0.11 0.96 5.96 -3.39 -0.02 0.94 16 11 C -0.17 -1.65 5.78 -27.36 -0.16 -1.81 16 12 C 0.07 0.99 6.37 36.42 0.23 1.22 16 13 O -0.37 -6.66 9.18 -26.53 -0.24 -6.90 16 14 C 0.09 1.62 2.73 -25.81 -0.07 1.55 16 15 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 16 C 0.17 3.59 5.95 -4.04 -0.02 3.57 16 17 N -0.73 -19.65 5.49 -59.91 -0.33 -19.98 16 18 C -0.23 -6.87 9.99 -15.06 -0.15 -7.02 16 19 H 0.07 2.00 7.83 -52.49 -0.41 1.58 16 20 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 21 N -0.93 -29.29 13.06 55.49 0.72 -28.57 16 22 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 26 C 0.08 1.18 4.86 -3.86 -0.02 1.16 16 27 N -0.26 -3.15 12.40 33.29 0.41 -2.74 16 28 N -0.09 -0.96 13.17 60.35 0.79 -0.17 16 29 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 30 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 32 H 0.19 0.73 8.06 -52.49 -0.42 0.30 16 33 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.10 0.90 8.05 -51.93 -0.42 0.49 16 36 H 0.09 0.77 7.40 -51.93 -0.38 0.38 16 37 H 0.08 0.61 5.88 -51.92 -0.31 0.30 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.91 8.01 -51.93 -0.42 0.49 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.39 11.15 7.53 -40.82 -0.31 10.85 16 46 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.08 1.10 8.11 -51.93 -0.42 0.68 16 48 H 0.09 1.45 7.27 -51.93 -0.38 1.07 16 LS Contribution 392.14 15.07 5.91 5.91 Total: -1.00 -38.52 392.14 -6.63 -45.15 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.63 Total: 4.95 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -0.70 Total: 3.48 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: 0.97 Total: -61.82 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.16 Total: -15.77 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.52 -6.63 -45.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202234733.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.763 kcal (2) G-P(sol) polarization free energy of solvation -38.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds