Wall clock time and date at job start Tue Mar 31 2020 20:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35315 * 125.87119 * 2 1 4 4 C 1.35352 * 106.17556 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.75166 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47466 * 124.99908 * 5 4 3 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.47501 * 118.75871 * 359.74091 * 9 7 6 11 11 C 1.53205 * 111.23671 * 221.50676 * 10 9 7 12 12 C 1.51543 * 109.43054 * 40.26227 * 11 10 9 13 13 O 1.42156 * 108.76368 * 268.50985 * 12 11 10 14 14 C 1.38013 * 119.43944 * 87.21501 * 13 12 11 15 15 H 1.09005 * 109.47013 * 56.57655 * 14 13 12 16 16 C 1.52998 * 109.46344 * 176.56800 * 14 13 12 17 17 N 1.46500 * 109.47407 * 300.00919 * 16 14 13 18 18 C 1.36937 * 120.00002 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99827 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99983 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99820 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00133 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46917 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47071 * 120.00275 * 22 20 18 25 25 H 1.48497 * 109.47198 * 240.00444 * 22 20 18 26 26 C 1.45120 * 118.75163 * 180.02562 * 9 7 6 27 27 N 1.33773 * 106.49722 * 0.25837 * 4 3 2 28 28 N 1.28641 * 108.88335 * 359.56739 * 27 4 3 29 29 H 1.09005 * 109.46583 * 89.99893 * 1 2 3 30 30 H 1.08990 * 109.47500 * 210.00188 * 1 2 3 31 31 H 1.09007 * 109.46811 * 330.00728 * 1 2 3 32 32 H 1.07998 * 126.91025 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.47120 * 4.99661 * 5 4 3 34 34 H 1.08998 * 109.46862 * 245.00463 * 5 4 3 35 35 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 36 36 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 37 37 H 1.09011 * 109.16339 * 342.01877 * 10 9 7 38 38 H 1.08994 * 109.17313 * 101.22453 * 10 9 7 39 39 H 1.08998 * 109.60720 * 280.22763 * 11 10 9 40 40 H 1.08995 * 109.42757 * 160.18603 * 11 10 9 41 41 H 1.08998 * 109.58498 * 148.72139 * 12 11 10 42 42 H 1.09006 * 109.58366 * 28.28954 * 12 11 10 43 43 H 1.08998 * 109.47252 * 60.01868 * 16 14 13 44 44 H 1.09001 * 109.46929 * 180.02562 * 16 14 13 45 45 H 0.97000 * 119.99821 * 0.02562 * 17 16 14 46 46 H 0.97001 * 119.99858 * 179.97438 * 21 20 18 47 47 H 1.08996 * 109.45938 * 210.72668 * 26 9 7 48 48 H 1.08996 * 109.46600 * 330.68936 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2579 1.0965 0.0000 4 6 3.5323 0.6403 0.0006 5 6 4.7881 1.4732 0.0014 6 6 5.6699 1.0655 1.1833 7 6 6.9261 1.8980 1.1837 8 8 7.0988 2.7354 0.3235 9 7 7.8570 1.7127 2.1405 10 6 7.6156 0.6916 3.1773 11 6 8.0373 1.1956 4.5613 12 6 7.6354 2.6489 4.7126 13 8 8.7169 3.4688 4.2895 14 6 8.8295 3.8086 2.9566 15 1 7.9142 4.3015 2.6288 16 6 10.0147 4.7581 2.7710 17 7 9.7999 5.9689 3.5674 18 6 10.7357 6.9686 3.5594 19 1 11.6318 6.8646 2.9656 20 6 10.5325 8.1155 4.3144 21 7 9.4405 8.2419 5.0384 22 14 11.8086 9.4796 4.3029 23 1 12.9354 9.0958 3.4151 24 1 11.1891 10.7328 3.8021 25 1 12.3156 9.6948 5.6820 26 6 9.0561 2.5297 2.1153 27 7 3.4576 -0.6953 -0.0049 28 7 2.2191 -1.0431 0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 1.9382 2.1281 0.0004 33 1 4.5250 2.5272 0.0909 34 1 5.3314 1.3123 -0.9298 35 1 5.9330 0.0115 1.0938 36 1 5.1265 1.2265 2.1145 37 1 6.5543 0.4436 3.1950 38 1 8.1877 -0.2045 2.9372 39 1 9.1180 1.1046 4.6700 40 1 7.5437 0.6006 5.3296 41 1 7.4055 2.8575 5.7575 42 1 6.7598 2.8520 4.0959 43 1 10.9300 4.2652 3.0986 44 1 10.1034 5.0269 1.7183 45 1 8.9952 6.0620 4.1009 46 1 9.2987 9.0432 5.5663 47 1 9.8896 1.9641 2.5318 48 1 9.2845 2.8080 1.0865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202234733.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:41 Heat of formation + Delta-G solvation = 11.469604 kcal Electronic energy + Delta-G solvation = -29318.819059 eV Core-core repulsion = 25217.843957 eV Total energy + Delta-G solvation = -4100.975102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.21081 -41.65473 -39.74116 -36.90754 -36.24583 -36.11172 -34.59405 -34.18952 -32.65316 -31.52477 -30.14222 -28.73136 -27.95487 -26.81210 -25.79773 -24.19169 -23.02247 -22.79584 -22.27959 -21.83317 -19.87089 -19.25001 -18.56690 -17.93980 -17.69037 -17.58148 -17.44393 -17.05338 -16.48565 -16.33963 -15.76326 -15.71824 -15.15103 -15.11244 -14.80919 -14.73348 -14.57611 -14.11577 -13.99938 -13.82500 -13.70354 -13.41469 -13.34587 -13.17124 -13.03654 -12.79073 -12.64424 -12.54758 -12.32284 -12.25763 -12.08020 -11.96910 -11.81192 -11.67440 -11.44552 -10.99355 -10.98102 -10.83474 -10.53251 -10.12930 -9.62388 -8.99944 -7.93359 -5.22866 0.64782 1.45875 1.47331 1.49392 1.58164 1.58518 1.59789 1.97504 2.57012 2.74634 3.27568 3.39935 3.56663 3.66161 3.74767 3.88156 3.98319 4.04461 4.07990 4.10296 4.15594 4.21618 4.30149 4.34758 4.37995 4.43143 4.48223 4.54642 4.60759 4.65795 4.72265 4.75693 4.78659 4.89097 4.90091 5.00502 5.10904 5.11291 5.13894 5.21026 5.25473 5.48477 5.54723 5.69291 6.27364 6.29774 6.77647 7.13744 7.33755 7.50272 8.08254 8.33805 9.30775 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.002159 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.989797 B =12963.114424 C =13572.395690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.288 5.288 3 C -0.034 4.034 4 C -0.035 4.035 5 C -0.011 4.011 6 C -0.120 4.120 7 C 0.503 3.497 8 O -0.578 6.578 9 N -0.609 5.609 10 C 0.101 3.899 11 C -0.157 4.157 12 C 0.065 3.935 13 O -0.397 6.397 14 C 0.106 3.894 15 H 0.023 0.977 16 C 0.162 3.838 17 N -0.739 5.739 18 C -0.246 4.246 19 H 0.078 0.922 20 C -0.080 4.080 21 N -0.970 5.970 22 Si 0.979 3.021 23 H -0.265 1.265 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.094 3.906 27 N -0.299 5.299 28 N -0.122 5.122 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.227 0.773 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.045 0.955 43 H 0.031 0.969 44 H 0.035 0.965 45 H 0.374 0.626 46 H 0.251 0.749 47 H 0.099 0.901 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.579 -22.233 -6.925 30.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.082 5.082 3 C -0.185 4.185 4 C -0.174 4.174 5 C -0.051 4.051 6 C -0.160 4.160 7 C 0.293 3.707 8 O -0.458 6.458 9 N -0.342 5.342 10 C -0.020 4.020 11 C -0.195 4.195 12 C -0.011 4.011 13 O -0.316 6.316 14 C 0.045 3.955 15 H 0.041 0.959 16 C 0.035 3.965 17 N -0.382 5.382 18 C -0.377 4.377 19 H 0.096 0.904 20 C -0.272 4.272 21 N -0.621 5.621 22 Si 0.808 3.192 23 H -0.189 1.189 24 H -0.219 1.219 25 H -0.218 1.218 26 C -0.031 4.031 27 N -0.165 5.165 28 N -0.101 5.101 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.147 0.853 32 H 0.244 0.756 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.137 0.863 41 H 0.112 0.888 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.053 0.947 45 H 0.206 0.794 46 H 0.060 0.940 47 H 0.117 0.883 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.210 -23.288 -7.310 31.062 hybrid contribution 0.035 2.082 0.072 2.083 sum -19.175 -21.207 -7.238 29.493 Atomic orbital electron populations 1.22740 0.69831 1.07803 1.06633 1.47641 1.11008 1.04226 1.45321 1.23995 0.90048 0.96188 1.08308 1.22112 0.96287 0.91030 1.08019 1.19503 0.89443 0.97749 0.98407 1.21592 0.92262 1.00851 1.01258 1.21374 0.85596 0.83285 0.80424 1.90710 1.79079 1.36938 1.39059 1.48058 1.19480 1.38186 1.28440 1.22227 1.03829 0.89796 0.86143 1.22375 1.03474 0.96088 0.97546 1.22400 0.88340 0.90256 1.00109 1.86362 1.49900 1.70172 1.25186 1.21872 0.97065 0.93908 0.82626 0.95940 1.20766 0.95248 0.86185 0.94332 1.42411 1.23904 1.16749 1.55093 1.19727 1.00014 0.96067 1.21936 0.90432 1.25654 1.00160 1.01178 1.00176 1.69861 1.28645 1.29049 1.34583 0.84986 0.78392 0.78695 0.77151 1.18912 1.21922 1.21841 1.22079 0.88117 0.91580 1.01316 1.74973 1.10329 1.13290 1.17911 1.78224 0.96625 1.13608 1.21622 0.87521 0.87434 0.85285 0.75613 0.88958 0.90803 0.87121 0.87099 0.87459 0.89209 0.90780 0.86300 0.88830 0.93698 0.95070 0.94728 0.79421 0.94015 0.88327 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.11 11.39 127.77 1.46 1.57 16 2 N -0.29 -3.67 3.74 -369.22 -1.38 -5.05 16 3 C -0.03 -0.42 11.54 83.49 0.96 0.55 16 4 C -0.04 -0.65 6.50 41.60 0.27 -0.38 16 5 C -0.01 -0.21 5.08 29.85 0.15 -0.06 16 6 C -0.12 -2.13 4.02 29.85 0.12 -2.01 16 7 C 0.50 12.89 7.63 87.66 0.67 13.56 16 8 O -0.58 -19.89 15.41 -3.03 -0.05 -19.94 16 9 N -0.61 -14.38 2.20 -818.80 -1.80 -16.18 16 10 C 0.10 1.54 5.96 86.26 0.51 2.05 16 11 C -0.16 -2.66 5.78 30.19 0.17 -2.49 16 12 C 0.06 1.66 6.37 71.50 0.46 2.12 16 13 O -0.40 -14.52 9.18 -117.84 -1.08 -15.60 16 14 C 0.11 3.93 2.73 31.19 0.09 4.01 16 15 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 16 C 0.16 7.20 5.95 86.38 0.51 7.71 16 17 N -0.74 -41.16 5.49 -343.46 -1.89 -43.05 16 18 C -0.25 -14.60 9.99 84.03 0.84 -13.76 16 19 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 20 C -0.08 -4.81 5.50 84.86 0.47 -4.35 16 21 N -0.97 -62.19 13.06 21.65 0.28 -61.90 16 22 Si 0.98 47.95 29.55 68.60 2.03 49.98 16 23 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 26 C 0.09 2.73 4.86 87.24 0.42 3.15 16 27 N -0.30 -6.95 12.40 -48.60 -0.60 -7.55 16 28 N -0.12 -2.55 13.17 37.02 0.49 -2.06 16 29 H 0.11 -0.11 8.14 -2.38 -0.02 -0.13 16 30 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.13 -0.52 8.14 -2.38 -0.02 -0.54 16 32 H 0.23 0.94 8.06 -2.91 -0.02 0.92 16 33 H 0.09 1.66 8.08 -2.39 -0.02 1.64 16 34 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 35 H 0.11 1.79 8.05 -2.39 -0.02 1.77 16 36 H 0.11 1.57 7.40 -2.39 -0.02 1.55 16 37 H 0.11 1.16 5.88 -2.38 -0.01 1.14 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.44 8.01 -2.39 -0.02 1.43 16 40 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.04 1.15 7.39 -2.38 -0.02 1.13 16 43 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.37 22.40 7.53 -92.71 -0.70 21.70 16 46 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 47 H 0.10 2.53 8.11 -2.39 -0.02 2.51 16 48 H 0.08 2.57 7.27 -2.39 -0.02 2.55 16 Total: -1.00 -86.75 392.14 3.37 -83.38 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.27 Total: 26.31 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 7.10 Total: 11.66 kcal Atomic # 7 Polarization: -130.90 SS G_CDS: -4.90 Total: -135.80 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -1.13 Total: -35.54 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -86.75 3.37 -83.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202234733.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.850 kcal (2) G-P(sol) polarization free energy of solvation -86.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds