Wall clock time and date at job start Tue Mar 31 2020 21:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37357 * 125.83731 * 2 1 4 4 N 1.29397 * 108.83459 * 180.02562 * 3 2 1 5 5 N 1.40165 * 108.13942 * 359.97438 * 4 3 2 6 6 C 1.46501 * 126.34945 * 180.26779 * 5 4 3 7 7 C 1.53007 * 109.46915 * 269.68975 * 6 5 4 8 8 C 1.50709 * 109.46909 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99741 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99664 * 180.02562 * 8 7 6 11 11 C 1.46924 * 120.63454 * 359.72310 * 10 8 7 12 12 C 1.53619 * 108.54354 * 126.36769 * 11 10 8 13 13 C 1.53040 * 109.24409 * 54.85704 * 12 11 10 14 14 C 1.53001 * 109.46105 * 178.49267 * 13 12 11 15 15 N 1.46500 * 109.46855 * 295.06409 * 14 13 12 16 16 C 1.36931 * 119.99965 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00248 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00181 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00054 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00213 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46964 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46877 * 120.00151 * 20 18 16 23 23 H 1.48498 * 109.47202 * 240.00125 * 20 18 16 24 24 C 1.53041 * 109.53734 * 298.51261 * 13 12 11 25 25 C 1.46930 * 120.62728 * 179.97438 * 10 8 7 26 26 C 1.34817 * 125.83270 * 180.02562 * 2 1 3 27 27 O 1.21816 * 126.30186 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.46895 * 269.97510 * 1 2 3 29 29 H 1.09001 * 109.46960 * 29.97771 * 1 2 3 30 30 H 1.09000 * 109.47205 * 149.97468 * 1 2 3 31 31 H 1.08001 * 125.58218 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.47090 * 29.68707 * 6 5 4 33 33 H 1.08999 * 109.47404 * 149.68930 * 6 5 4 34 34 H 1.08996 * 109.47288 * 299.99734 * 7 6 5 35 35 H 1.08999 * 109.46700 * 60.00431 * 7 6 5 36 36 H 1.09000 * 109.58576 * 246.20456 * 11 10 8 37 37 H 1.09003 * 109.58282 * 6.62435 * 11 10 8 38 38 H 1.09001 * 109.63453 * 294.86350 * 12 11 10 39 39 H 1.09003 * 109.43028 * 174.72177 * 12 11 10 40 40 H 1.09002 * 109.45064 * 58.52153 * 13 12 11 41 41 H 1.08995 * 109.47069 * 55.06718 * 14 13 12 42 42 H 1.08996 * 109.47032 * 175.07092 * 14 13 12 43 43 H 0.97002 * 120.00011 * 0.02562 * 15 14 13 44 44 H 0.96999 * 120.00330 * 179.97438 * 19 18 16 45 45 H 1.09008 * 109.49417 * 301.41268 * 24 13 12 46 46 H 1.09000 * 109.52556 * 181.33786 * 24 13 12 47 47 H 1.09003 * 109.58735 * 353.37567 * 25 10 8 48 48 H 1.09004 * 109.58481 * 113.65276 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2692 1.1135 0.0000 4 7 3.5066 0.7352 -0.0005 5 7 3.5344 -0.6662 -0.0003 6 6 4.7313 -1.5110 0.0047 7 6 5.1495 -1.8115 -1.4361 8 6 6.3812 -2.6800 -1.4309 9 8 6.8754 -3.0250 -0.3784 10 7 6.9332 -3.0732 -2.5957 11 6 6.3424 -2.6685 -3.8786 12 6 7.4346 -2.0064 -4.7322 13 6 8.6225 -2.9625 -4.8616 14 6 9.6980 -2.3231 -5.7422 15 7 9.1808 -2.1588 -7.1030 16 6 9.9713 -1.6039 -8.0736 17 1 10.9763 -1.2877 -7.8361 18 6 9.4811 -1.4477 -9.3629 19 7 8.2562 -1.8326 -9.6523 20 14 10.5593 -0.6900 -10.6868 21 1 11.8828 -0.3438 -10.1092 22 1 10.7420 -1.6633 -11.7934 23 1 9.9105 0.5388 -11.2105 24 6 9.2029 -3.2485 -3.4747 25 6 8.1343 -3.9195 -2.6068 26 6 2.2542 -1.0930 -0.0005 27 8 1.8805 -2.2524 -0.0006 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8897 -0.5142 31 1 1.9250 2.1373 -0.0004 32 1 5.5408 -0.9910 0.5171 33 1 4.5145 -2.4453 0.5225 34 1 4.3400 -2.3314 -1.9484 35 1 5.3664 -0.8772 -1.9538 36 1 5.9532 -3.5461 -4.3947 37 1 5.5348 -1.9583 -3.7010 38 1 7.7618 -1.0821 -4.2559 39 1 7.0364 -1.7848 -5.7224 40 1 8.2894 -3.8960 -5.3153 41 1 9.9680 -1.3484 -5.3360 42 1 10.5789 -2.9646 -5.7634 43 1 8.2782 -2.4432 -7.3164 44 1 7.9134 -1.7232 -10.5531 45 1 9.5133 -2.3124 -3.0102 46 1 10.0635 -3.9106 -3.5693 47 1 8.5093 -4.0351 -1.5899 48 1 7.8879 -4.8982 -3.0188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205748870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:32 Heat of formation + Delta-G solvation = 19.396128 kcal Electronic energy + Delta-G solvation = -28979.084854 eV Core-core repulsion = 24878.453472 eV Total energy + Delta-G solvation = -4100.631382 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.74005 -40.30156 -37.86004 -37.54647 -35.99181 -34.95517 -33.29478 -32.77750 -31.27249 -30.33134 -29.98053 -27.90249 -26.76038 -25.12158 -23.64272 -23.22299 -22.67285 -21.74634 -21.29891 -20.19137 -18.94611 -18.14539 -17.25405 -17.13562 -16.85616 -16.45039 -15.94988 -15.85864 -15.59835 -14.89190 -14.77161 -14.37085 -14.16368 -14.07369 -13.89210 -13.66117 -13.47641 -13.21511 -13.11123 -12.94130 -12.79448 -12.45438 -12.41289 -12.24671 -12.19539 -11.80403 -11.55475 -11.16011 -11.01038 -10.86647 -10.56498 -10.51276 -10.41588 -10.32114 -10.29173 -9.98771 -9.83598 -9.66251 -8.90455 -8.88801 -8.65051 -6.92584 -5.78362 -3.06313 1.40020 1.59422 2.34175 2.50796 2.70591 3.00092 3.42069 3.48066 3.50071 4.05077 4.30807 4.43654 4.53457 4.56243 4.57872 4.74684 4.84904 4.86458 5.02104 5.03738 5.07773 5.13538 5.19064 5.34700 5.35863 5.46174 5.51279 5.54989 5.58313 5.63874 5.79861 5.85012 5.94714 5.96359 6.08447 6.17267 6.18226 6.26844 6.42048 6.45328 6.62103 6.79775 6.91178 7.26990 7.32073 7.69751 7.71388 8.04149 8.41086 9.52321 10.10473 10.45151 11.44740 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014049 B = 0.002147 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.602375 B =13040.510097 C =14372.777898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.563 5.563 3 C 0.253 3.747 4 N -0.278 5.278 5 N -0.451 5.451 6 C 0.178 3.822 7 C -0.160 4.160 8 C 0.524 3.476 9 O -0.549 6.549 10 N -0.605 5.605 11 C 0.104 3.896 12 C -0.124 4.124 13 C -0.094 4.094 14 C 0.158 3.842 15 N -0.732 5.732 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.126 4.126 25 C 0.112 3.888 26 C 0.642 3.358 27 O -0.552 6.552 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.231 0.769 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.344 4.595 21.577 26.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.293 5.293 3 C -0.047 4.047 4 N -0.099 5.099 5 N -0.272 5.272 6 C 0.057 3.943 7 C -0.201 4.201 8 C 0.312 3.688 9 O -0.428 6.428 10 N -0.338 5.338 11 C -0.019 4.019 12 C -0.163 4.163 13 C -0.113 4.113 14 C 0.030 3.970 15 N -0.376 5.376 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.584 5.584 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.164 4.164 25 C -0.010 4.010 26 C 0.341 3.659 27 O -0.426 6.426 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.247 0.753 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.109 0.891 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.169 3.893 22.051 26.498 hybrid contribution -0.567 0.293 -1.169 1.332 sum -14.736 4.186 20.882 25.898 Atomic orbital electron populations 1.21832 0.74135 1.04853 1.03543 1.45962 1.08963 1.06716 1.67621 1.25969 0.85825 0.94789 0.98079 1.77047 1.18156 0.91965 1.22752 1.49034 1.06220 1.03138 1.68797 1.21190 0.83319 0.93604 0.96178 1.22074 0.97263 1.01540 0.99236 1.20222 0.84838 0.80271 0.83500 1.90693 1.63958 1.57507 1.30641 1.48148 1.28700 1.50982 1.05999 1.22008 0.96400 0.99975 0.83504 1.21999 0.95213 0.98436 1.00612 1.21311 0.96137 0.99156 0.94712 1.20670 0.93850 0.96584 0.85857 1.42384 1.16113 1.74688 1.04461 1.19286 0.96101 1.32024 0.89416 0.91193 1.24732 0.96685 1.02174 0.97525 1.69660 1.15440 1.53410 1.19846 0.86121 0.79509 0.78515 0.82095 1.20581 1.21897 1.21887 1.21902 0.97673 1.01337 0.95506 1.21634 0.84647 0.92953 1.01730 1.16816 0.82167 0.85145 0.81731 1.91106 1.77707 1.15193 1.58551 0.90876 0.89226 0.89347 0.75267 0.87754 0.87847 0.88321 0.87828 0.90897 0.90054 0.91695 0.89325 0.90959 0.96410 0.96336 0.78292 0.93597 0.91553 0.90592 0.89143 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.34 11.05 59.84 0.66 1.00 16 2 N -0.56 -4.12 3.14 -130.11 -0.41 -4.53 16 3 C 0.25 1.39 12.66 -89.12 -1.13 0.27 16 4 N -0.28 -2.55 12.53 29.87 0.37 -2.17 16 5 N -0.45 -4.92 3.63 -65.11 -0.24 -5.16 16 6 C 0.18 1.93 5.68 -4.04 -0.02 1.90 16 7 C -0.16 -1.68 4.37 -27.88 -0.12 -1.81 16 8 C 0.52 6.75 7.70 -10.98 -0.08 6.67 16 9 O -0.55 -8.53 15.40 5.55 0.09 -8.44 16 10 N -0.61 -7.53 2.97 -172.53 -0.51 -8.04 16 11 C 0.10 1.21 6.37 -3.49 -0.02 1.19 16 12 C -0.12 -1.78 5.26 -26.39 -0.14 -1.92 16 13 C -0.09 -1.44 2.19 -90.58 -0.20 -1.64 16 14 C 0.16 3.11 5.65 -4.04 -0.02 3.08 16 15 N -0.73 -18.13 5.32 -59.91 -0.32 -18.45 16 16 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 20 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 24 C -0.13 -1.62 5.36 -26.64 -0.14 -1.76 16 25 C 0.11 1.38 6.43 -3.73 -0.02 1.36 16 26 C 0.64 7.50 8.60 -86.73 -0.75 6.75 16 27 O -0.55 -8.33 17.72 5.09 0.09 -8.24 16 28 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.03 8.14 -51.93 -0.42 -0.40 16 30 H 0.09 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.23 0.01 8.06 -52.49 -0.42 -0.41 16 32 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 33 H 0.10 1.20 8.07 -51.93 -0.42 0.78 16 34 H 0.10 1.02 7.93 -51.93 -0.41 0.61 16 35 H 0.10 1.02 7.70 -51.93 -0.40 0.62 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.82 5.93 -51.93 -0.31 0.51 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.46 7.15 -51.93 -0.37 1.09 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.38 9.84 6.84 -40.82 -0.28 9.56 16 44 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 46 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.09 1.15 7.01 -51.93 -0.36 0.79 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 393.84 15.07 5.94 5.94 Total: -1.00 -37.08 393.84 -9.12 -46.19 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.59 Total: 4.99 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -2.24 Total: 7.80 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -0.38 Total: -65.54 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.18 Total: -16.69 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.08 -9.12 -46.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205748870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.589 kcal (2) G-P(sol) polarization free energy of solvation -37.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds