Wall clock time and date at job start Tue Mar 31 2020 21:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37357 * 125.83731 * 2 1 4 4 N 1.29397 * 108.83459 * 180.02562 * 3 2 1 5 5 N 1.40165 * 108.13942 * 359.97438 * 4 3 2 6 6 C 1.46501 * 126.34945 * 180.26779 * 5 4 3 7 7 C 1.53007 * 109.46915 * 269.68975 * 6 5 4 8 8 C 1.50709 * 109.46909 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99741 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99664 * 180.02562 * 8 7 6 11 11 C 1.46924 * 120.63454 * 359.72310 * 10 8 7 12 12 C 1.53619 * 108.54354 * 126.36769 * 11 10 8 13 13 C 1.53040 * 109.24409 * 54.85704 * 12 11 10 14 14 C 1.53001 * 109.46105 * 178.49267 * 13 12 11 15 15 N 1.46500 * 109.46855 * 295.06409 * 14 13 12 16 16 C 1.36931 * 119.99965 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00248 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00181 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00054 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00213 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46964 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46877 * 120.00151 * 20 18 16 23 23 H 1.48498 * 109.47202 * 240.00125 * 20 18 16 24 24 C 1.53041 * 109.53734 * 298.51261 * 13 12 11 25 25 C 1.46930 * 120.62728 * 179.97438 * 10 8 7 26 26 C 1.34817 * 125.83270 * 180.02562 * 2 1 3 27 27 O 1.21816 * 126.30186 * 359.97438 * 26 2 1 28 28 H 1.09001 * 109.46895 * 269.97510 * 1 2 3 29 29 H 1.09001 * 109.46960 * 29.97771 * 1 2 3 30 30 H 1.09000 * 109.47205 * 149.97468 * 1 2 3 31 31 H 1.08001 * 125.58218 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.47090 * 29.68707 * 6 5 4 33 33 H 1.08999 * 109.47404 * 149.68930 * 6 5 4 34 34 H 1.08996 * 109.47288 * 299.99734 * 7 6 5 35 35 H 1.08999 * 109.46700 * 60.00431 * 7 6 5 36 36 H 1.09000 * 109.58576 * 246.20456 * 11 10 8 37 37 H 1.09003 * 109.58282 * 6.62435 * 11 10 8 38 38 H 1.09001 * 109.63453 * 294.86350 * 12 11 10 39 39 H 1.09003 * 109.43028 * 174.72177 * 12 11 10 40 40 H 1.09002 * 109.45064 * 58.52153 * 13 12 11 41 41 H 1.08995 * 109.47069 * 55.06718 * 14 13 12 42 42 H 1.08996 * 109.47032 * 175.07092 * 14 13 12 43 43 H 0.97002 * 120.00011 * 0.02562 * 15 14 13 44 44 H 0.96999 * 120.00330 * 179.97438 * 19 18 16 45 45 H 1.09008 * 109.49417 * 301.41268 * 24 13 12 46 46 H 1.09000 * 109.52556 * 181.33786 * 24 13 12 47 47 H 1.09003 * 109.58735 * 353.37567 * 25 10 8 48 48 H 1.09004 * 109.58481 * 113.65276 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2692 1.1135 0.0000 4 7 3.5066 0.7352 -0.0005 5 7 3.5344 -0.6662 -0.0003 6 6 4.7313 -1.5110 0.0047 7 6 5.1495 -1.8115 -1.4361 8 6 6.3812 -2.6800 -1.4309 9 8 6.8754 -3.0250 -0.3784 10 7 6.9332 -3.0732 -2.5957 11 6 6.3424 -2.6685 -3.8786 12 6 7.4346 -2.0064 -4.7322 13 6 8.6225 -2.9625 -4.8616 14 6 9.6980 -2.3231 -5.7422 15 7 9.1808 -2.1588 -7.1030 16 6 9.9713 -1.6039 -8.0736 17 1 10.9763 -1.2877 -7.8361 18 6 9.4811 -1.4477 -9.3629 19 7 8.2562 -1.8326 -9.6523 20 14 10.5593 -0.6900 -10.6868 21 1 11.8828 -0.3438 -10.1092 22 1 10.7420 -1.6633 -11.7934 23 1 9.9105 0.5388 -11.2105 24 6 9.2029 -3.2485 -3.4747 25 6 8.1343 -3.9195 -2.6068 26 6 2.2542 -1.0930 -0.0005 27 8 1.8805 -2.2524 -0.0006 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8897 -0.5142 31 1 1.9250 2.1373 -0.0004 32 1 5.5408 -0.9910 0.5171 33 1 4.5145 -2.4453 0.5225 34 1 4.3400 -2.3314 -1.9484 35 1 5.3664 -0.8772 -1.9538 36 1 5.9532 -3.5461 -4.3947 37 1 5.5348 -1.9583 -3.7010 38 1 7.7618 -1.0821 -4.2559 39 1 7.0364 -1.7848 -5.7224 40 1 8.2894 -3.8960 -5.3153 41 1 9.9680 -1.3484 -5.3360 42 1 10.5789 -2.9646 -5.7634 43 1 8.2782 -2.4432 -7.3164 44 1 7.9134 -1.7232 -10.5531 45 1 9.5133 -2.3124 -3.0102 46 1 10.0635 -3.9106 -3.5693 47 1 8.5093 -4.0351 -1.5899 48 1 7.8879 -4.8982 -3.0188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205748870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:31 Heat of formation + Delta-G solvation = -4.609318 kcal Electronic energy + Delta-G solvation = -28980.125809 eV Core-core repulsion = 24878.453472 eV Total energy + Delta-G solvation = -4101.672336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.40684 -41.35477 -39.05145 -38.41945 -36.74010 -36.52625 -34.56278 -33.86709 -32.49312 -31.91194 -30.83702 -28.56180 -28.03988 -26.15982 -25.17819 -24.32419 -23.49212 -22.95998 -22.13776 -21.40847 -20.02205 -19.20692 -18.83295 -17.90185 -17.81462 -17.19771 -16.90712 -16.70740 -16.68083 -16.45400 -15.69683 -15.58205 -15.37072 -15.33161 -15.03927 -14.81287 -14.57229 -14.22735 -14.05268 -13.89727 -13.77530 -13.53741 -13.49637 -13.24058 -13.04932 -12.92486 -12.87699 -12.77878 -12.43458 -12.21538 -12.11983 -11.96087 -11.68695 -11.55872 -11.38650 -11.32536 -11.09651 -10.93411 -10.85418 -9.71521 -9.66625 -8.97953 -7.95114 -5.22855 0.72654 1.08867 1.47626 1.47950 1.48424 1.54635 1.58067 1.93168 2.28292 2.56163 3.38514 3.39057 3.48216 3.65595 3.75898 3.81063 3.88466 3.96290 4.09934 4.12528 4.25207 4.27288 4.28963 4.36199 4.43858 4.53866 4.58024 4.63783 4.67038 4.72348 4.79331 4.82521 4.85485 4.94787 4.95194 5.03253 5.08210 5.09705 5.16601 5.27475 5.47458 5.53807 5.54913 5.69178 6.28021 6.30338 6.63144 6.92967 7.02288 7.34728 8.10989 8.35118 9.28489 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014049 B = 0.002147 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.602375 B =13040.510097 C =14372.777898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.559 5.559 3 C 0.280 3.720 4 N -0.316 5.316 5 N -0.458 5.458 6 C 0.181 3.819 7 C -0.147 4.147 8 C 0.524 3.476 9 O -0.578 6.578 10 N -0.606 5.606 11 C 0.111 3.889 12 C -0.118 4.118 13 C -0.085 4.085 14 C 0.157 3.843 15 N -0.742 5.742 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.075 4.075 19 N -0.967 5.967 20 Si 0.971 3.029 21 H -0.268 1.268 22 H -0.293 1.293 23 H -0.292 1.292 24 C -0.115 4.115 25 C 0.114 3.886 26 C 0.625 3.375 27 O -0.600 6.600 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.071 0.929 31 H 0.288 0.712 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.015 0.985 42 H 0.018 0.982 43 H 0.376 0.624 44 H 0.251 0.749 45 H 0.062 0.938 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.014 6.283 22.067 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.286 5.286 3 C -0.018 4.018 4 N -0.137 5.137 5 N -0.277 5.277 6 C 0.060 3.940 7 C -0.188 4.188 8 C 0.312 3.688 9 O -0.458 6.458 10 N -0.338 5.338 11 C -0.011 4.011 12 C -0.156 4.156 13 C -0.104 4.104 14 C 0.030 3.970 15 N -0.385 5.385 16 C -0.376 4.376 17 H 0.090 0.910 18 C -0.267 4.267 19 N -0.618 5.618 20 Si 0.800 3.200 21 H -0.193 1.193 22 H -0.221 1.221 23 H -0.219 1.219 24 C -0.153 4.153 25 C -0.008 4.008 26 C 0.324 3.676 27 O -0.477 6.477 28 H 0.104 0.896 29 H 0.149 0.851 30 H 0.090 0.910 31 H 0.303 0.697 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.033 0.967 42 H 0.036 0.964 43 H 0.209 0.791 44 H 0.060 0.940 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.834 5.621 22.566 27.584 hybrid contribution -0.389 -0.166 -1.256 1.326 sum -15.223 5.455 21.310 26.751 Atomic orbital electron populations 1.22170 0.71841 1.06090 1.04807 1.46190 1.10223 1.05973 1.66238 1.27142 0.84417 0.96121 0.94112 1.77076 1.20340 0.90475 1.25826 1.49026 1.05835 1.04183 1.68700 1.21029 0.83607 0.93217 0.96182 1.21964 0.96104 1.01443 0.99243 1.20558 0.85147 0.80000 0.83055 1.90680 1.64923 1.58611 1.31624 1.48211 1.28720 1.50739 1.06110 1.21978 0.95780 1.00610 0.82725 1.21877 0.95565 0.98339 0.99847 1.21199 0.95284 0.98704 0.95185 1.20816 0.95158 0.96691 0.84292 1.42561 1.15647 1.74369 1.05943 1.19653 0.96420 1.31262 0.90280 0.90995 1.25524 0.98051 1.03409 0.99705 1.69801 1.17025 1.54973 1.20041 0.85105 0.78329 0.77336 0.79187 1.19293 1.22066 1.21916 1.21802 0.98190 1.01571 0.93754 1.21634 0.84402 0.93373 1.01410 1.17144 0.82889 0.85536 0.82056 1.91051 1.78545 1.17295 1.60798 0.89642 0.85059 0.91037 0.69671 0.87751 0.89443 0.88035 0.86715 0.90088 0.88091 0.92025 0.91633 0.91293 0.96690 0.96382 0.79140 0.93984 0.91883 0.89395 0.89411 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 11.05 127.77 1.41 1.83 16 2 N -0.56 -7.07 3.14 -683.69 -2.15 -9.22 16 3 C 0.28 2.19 12.66 179.83 2.28 4.47 16 4 N -0.32 -5.25 12.53 -59.42 -0.74 -5.99 16 5 N -0.46 -9.86 3.63 -477.99 -1.73 -11.59 16 6 C 0.18 3.99 5.68 86.38 0.49 4.48 16 7 C -0.15 -3.01 4.37 29.85 0.13 -2.88 16 8 C 0.52 13.20 7.70 87.66 0.67 13.87 16 9 O -0.58 -17.94 15.40 -3.04 -0.05 -17.99 16 10 N -0.61 -14.39 2.97 -818.14 -2.43 -16.81 16 11 C 0.11 2.47 6.37 86.51 0.55 3.02 16 12 C -0.12 -3.32 5.26 30.82 0.16 -3.16 16 13 C -0.08 -2.54 2.19 -10.77 -0.02 -2.57 16 14 C 0.16 6.13 5.65 86.38 0.49 6.62 16 15 N -0.74 -36.99 5.32 -343.46 -1.83 -38.81 16 16 C -0.24 -13.59 9.99 84.04 0.84 -12.75 16 17 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 18 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 19 N -0.97 -58.37 13.06 21.65 0.28 -58.08 16 20 Si 0.97 45.91 29.55 68.60 2.03 47.93 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 C -0.11 -2.81 5.36 30.66 0.16 -2.64 16 25 C 0.11 2.65 6.43 86.35 0.55 3.21 16 26 C 0.62 14.52 8.60 178.99 1.54 16.06 16 27 O -0.60 -18.77 17.72 -4.72 -0.08 -18.85 16 28 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.13 -0.49 8.14 -2.39 -0.02 -0.51 16 30 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 31 H 0.29 -1.56 8.06 -2.91 -0.02 -1.58 16 32 H 0.10 2.24 8.10 -2.38 -0.02 2.22 16 33 H 0.09 2.17 8.07 -2.39 -0.02 2.15 16 34 H 0.10 2.05 7.93 -2.39 -0.02 2.03 16 35 H 0.11 2.11 7.70 -2.39 -0.02 2.09 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 1.86 5.93 -2.39 -0.01 1.85 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 2.18 7.15 -2.39 -0.02 2.16 16 40 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.38 19.62 6.84 -92.71 -0.63 18.99 16 44 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 45 H 0.06 1.60 8.14 -2.38 -0.02 1.59 16 46 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.09 2.15 7.01 -2.39 -0.02 2.14 16 48 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -82.37 393.84 3.36 -79.01 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.33 Total: 24.64 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: 9.73 Total: 25.76 kcal Atomic # 7 Polarization: -131.92 SS G_CDS: -8.60 Total: -140.51 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.13 Total: -36.84 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -82.37 3.36 -79.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205748870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.400 kcal (2) G-P(sol) polarization free energy of solvation -82.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds