Wall clock time and date at job start Tue Mar 31 2020 21:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40441 * 126.82458 * 2 1 4 4 C 1.30714 * 106.79101 * 179.97438 * 3 2 1 5 5 N 1.33244 * 108.94611 * 359.76635 * 4 3 2 6 6 C 1.30834 * 109.82911 * 0.39618 * 5 4 3 7 7 C 1.50698 * 125.95880 * 179.86897 * 6 5 4 8 8 O 1.42903 * 109.46975 * 269.68975 * 7 6 5 9 9 C 1.42905 * 113.99721 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.46808 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00306 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00030 * 179.97438 * 10 9 8 13 13 C 1.46926 * 120.63336 * 180.02562 * 12 10 9 14 14 C 1.53191 * 108.89109 * 233.68039 * 13 12 10 15 15 C 1.53035 * 109.31327 * 305.29292 * 14 13 12 16 16 C 1.53007 * 109.46118 * 181.38770 * 15 14 13 17 17 N 1.46500 * 109.47181 * 174.99781 * 16 15 14 18 18 C 1.36933 * 119.99958 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00261 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00222 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99893 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00067 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47238 * 60.00026 * 22 20 18 24 24 H 1.48501 * 109.46861 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47107 * 299.99583 * 22 20 18 26 26 C 1.53038 * 109.54175 * 61.36680 * 15 14 13 27 27 C 1.47207 * 120.81118 * 0.14238 * 12 10 9 28 28 H 1.09001 * 109.47061 * 270.04648 * 1 2 3 29 29 H 1.09002 * 109.46684 * 30.03640 * 1 2 3 30 30 H 1.08996 * 109.47510 * 150.03888 * 1 2 3 31 31 H 1.07995 * 125.52552 * 180.02562 * 4 3 2 32 32 H 1.09011 * 109.46857 * 149.69749 * 7 6 5 33 33 H 1.08992 * 109.47443 * 29.69762 * 7 6 5 34 34 H 1.08992 * 109.47241 * 60.00227 * 9 8 7 35 35 H 1.09000 * 109.47072 * 299.99682 * 9 8 7 36 36 H 1.09002 * 109.58861 * 113.82042 * 13 12 10 37 37 H 1.08996 * 109.58519 * 353.53933 * 13 12 10 38 38 H 1.09003 * 109.49975 * 65.24379 * 14 13 12 39 39 H 1.09000 * 109.49553 * 185.30642 * 14 13 12 40 40 H 1.09005 * 109.46002 * 301.35718 * 15 14 13 41 41 H 1.08996 * 109.46924 * 295.00300 * 16 15 14 42 42 H 1.09004 * 109.46756 * 54.99920 * 16 15 14 43 43 H 0.97000 * 120.00269 * 359.97438 * 17 16 15 44 44 H 0.96999 * 120.00395 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.49557 * 58.58503 * 26 15 14 46 46 H 1.08996 * 109.50003 * 178.68400 * 26 15 14 47 47 H 1.08996 * 109.53610 * 6.53286 * 27 12 10 48 48 H 1.09002 * 109.68003 * 246.22753 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1242 0.0000 4 6 3.5349 0.6764 0.0006 5 7 3.5096 -0.6558 0.0060 6 6 2.2706 -1.0762 0.0005 7 6 1.8246 -2.5156 0.0012 8 8 1.6836 -2.9712 -1.3459 9 6 1.2614 -4.3319 -1.4580 10 6 1.1470 -4.7039 -2.9139 11 8 1.4015 -3.8844 -3.7710 12 7 0.7619 -5.9472 -3.2635 13 6 0.6463 -6.3251 -4.6786 14 6 -0.7533 -6.8965 -4.9267 15 6 -1.0114 -8.0454 -3.9493 16 6 -2.3950 -8.6414 -4.2171 17 7 -2.5945 -9.8154 -3.3638 18 6 -3.7682 -10.5176 -3.4290 19 1 -4.5471 -10.2057 -4.1091 20 6 -3.9576 -11.6297 -2.6201 21 7 -3.0087 -12.0095 -1.7908 22 14 -5.5585 -12.5881 -2.7095 23 1 -5.7466 -13.1101 -4.0869 24 1 -5.5106 -13.7221 -1.7520 25 1 -6.6912 -11.6934 -2.3602 26 6 -0.9521 -7.5192 -2.5135 27 6 0.4457 -6.9549 -2.2380 28 1 -0.3633 0.0008 1.0277 29 1 -0.3633 0.8897 -0.5144 30 1 -0.3634 -0.8903 -0.5132 31 1 4.4255 1.2872 0.0011 32 1 0.8668 -2.5990 0.5151 33 1 2.5670 -3.1259 0.5154 34 1 0.2920 -4.4525 -0.9746 35 1 1.9920 -4.9801 -0.9741 36 1 1.3964 -7.0787 -4.9181 37 1 0.7984 -5.4462 -5.3050 38 1 -1.4977 -6.1150 -4.7741 39 1 -0.8189 -7.2667 -5.9498 40 1 -0.2519 -8.8154 -4.0853 41 1 -3.1600 -7.8972 -3.9960 42 1 -2.4670 -8.9366 -5.2639 43 1 -1.8952 -10.0953 -2.7526 44 1 -3.1408 -12.7868 -1.2258 45 1 -1.6946 -6.7318 -2.3837 46 1 -1.1591 -8.3332 -1.8188 47 1 0.4646 -6.4902 -1.2523 48 1 1.1792 -7.7603 -2.2764 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206742454.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:20 Heat of formation + Delta-G solvation = 27.923443 kcal Electronic energy + Delta-G solvation = -28643.250443 eV Core-core repulsion = 24542.988833 eV Total energy + Delta-G solvation = -4100.261610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.48553 -40.38212 -38.46971 -37.42944 -34.99413 -34.47846 -33.00751 -32.41089 -31.37317 -30.39054 -29.10165 -27.88527 -26.86227 -26.12824 -23.74164 -23.26992 -22.41242 -21.83330 -21.07325 -20.38656 -19.14374 -17.93798 -17.44106 -17.16975 -16.95595 -16.57762 -16.21094 -15.69585 -15.25515 -15.15224 -14.78510 -14.64997 -14.29024 -14.02412 -13.81421 -13.64695 -13.61945 -13.47062 -13.39010 -12.94558 -12.66514 -12.47145 -12.41509 -12.25363 -11.99429 -11.86842 -11.22566 -11.04815 -10.86520 -10.48521 -10.42595 -10.41141 -10.36033 -10.32012 -10.15136 -10.07125 -10.04688 -9.79569 -9.69308 -8.91367 -8.72655 -6.96450 -5.81618 -3.09710 1.03962 1.85530 2.32069 2.43087 2.70509 3.33844 3.40521 3.45288 3.45953 3.85540 4.03125 4.21765 4.37820 4.54630 4.59103 4.62803 4.66578 4.70622 4.78555 4.79539 4.96712 4.97429 5.01043 5.08040 5.10315 5.28846 5.37602 5.50423 5.57820 5.73409 5.85368 5.87666 5.89228 6.01807 6.03974 6.12552 6.21134 6.24713 6.31777 6.38687 6.47040 6.56448 6.75062 6.86035 7.23443 7.65575 7.69015 8.01078 8.37872 9.49076 10.06746 10.41470 11.41242 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019785 B = 0.001851 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.870693 B =15122.487466 C =15777.743072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.367 5.367 3 N -0.316 5.316 4 C 0.200 3.800 5 N -0.525 5.525 6 C 0.280 3.720 7 C 0.141 3.859 8 O -0.356 6.356 9 C 0.045 3.955 10 C 0.517 3.483 11 O -0.526 6.526 12 N -0.607 5.607 13 C 0.114 3.886 14 C -0.126 4.126 15 C -0.094 4.094 16 C 0.158 3.842 17 N -0.732 5.732 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.126 4.126 27 C 0.103 3.897 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.221 0.779 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.064 0.936 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.453 20.390 5.209 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.159 5.159 3 N -0.144 5.144 4 C -0.103 4.103 5 N -0.254 5.254 6 C 0.003 3.997 7 C 0.061 3.939 8 O -0.273 6.273 9 C -0.035 4.035 10 C 0.304 3.696 11 O -0.401 6.401 12 N -0.342 5.342 13 C -0.008 4.008 14 C -0.165 4.165 15 C -0.113 4.113 16 C 0.030 3.970 17 N -0.376 5.376 18 C -0.371 4.371 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.164 4.164 27 C -0.019 4.019 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.237 0.763 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.109 0.891 47 H 0.097 0.903 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.456 21.441 4.545 24.284 hybrid contribution -0.966 -1.023 0.451 1.477 sum 9.490 20.419 4.996 23.064 Atomic orbital electron populations 1.22064 0.73358 1.05658 1.03989 1.50265 1.08249 1.03856 1.53510 1.78071 1.02227 1.08024 1.26089 1.26008 0.95850 0.90223 0.98213 1.70458 1.19414 1.11725 1.23794 1.23687 0.86435 0.91618 0.97960 1.20671 1.01385 0.86284 0.85540 1.88066 1.88975 1.26422 1.23818 1.22340 1.01295 0.84120 0.95697 1.20031 0.77486 0.81880 0.90230 1.90732 1.48853 1.48907 1.51638 1.48156 1.66982 1.11008 1.08067 1.21636 0.97486 1.00696 0.80949 1.21916 0.96076 0.98339 1.00122 1.21310 0.99503 0.96537 0.93970 1.20671 0.92441 0.89616 0.94254 1.42357 1.18442 1.29945 1.46858 1.19189 0.93570 1.06354 1.17962 0.91320 1.24722 0.98091 0.98927 0.99234 1.69632 1.32945 1.28061 1.27700 0.86270 0.83220 0.79511 0.77198 1.21284 1.21686 1.21319 1.21941 0.94775 1.01396 0.98254 1.21989 0.98270 0.91347 0.90288 0.89844 0.88545 0.88538 0.76295 0.90401 0.88756 0.89559 0.89446 0.91291 0.89191 0.91575 0.90509 0.90866 0.96437 0.96335 0.78288 0.93479 0.91722 0.89140 0.90251 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 11.16 59.85 0.67 1.17 16 2 N -0.37 -3.58 4.04 -65.10 -0.26 -3.85 16 3 N -0.32 -3.52 12.70 29.29 0.37 -3.14 16 4 C 0.20 2.04 13.03 -91.81 -1.20 0.84 16 5 N -0.53 -6.22 11.19 -11.97 -0.13 -6.35 16 6 C 0.28 2.90 7.61 -155.69 -1.19 1.72 16 7 C 0.14 1.05 6.06 36.00 0.22 1.26 16 8 O -0.36 -3.82 9.86 -55.14 -0.54 -4.37 16 9 C 0.05 0.39 4.77 36.00 0.17 0.56 16 10 C 0.52 6.43 7.78 -10.99 -0.09 6.34 16 11 O -0.53 -8.82 15.91 -14.36 -0.23 -9.05 16 12 N -0.61 -6.81 2.98 -172.52 -0.51 -7.32 16 13 C 0.11 1.31 6.42 -3.71 -0.02 1.29 16 14 C -0.13 -1.52 5.36 -26.61 -0.14 -1.66 16 15 C -0.09 -1.34 2.19 -90.58 -0.20 -1.54 16 16 C 0.16 2.96 5.65 -4.04 -0.02 2.94 16 17 N -0.73 -17.45 5.32 -59.90 -0.32 -17.77 16 18 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 19 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -27.19 13.06 55.49 0.72 -26.47 16 22 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 26 C -0.13 -1.60 5.25 -26.59 -0.14 -1.74 16 27 C 0.10 1.00 6.35 -3.53 -0.02 0.98 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.43 7.72 -51.93 -0.40 0.03 16 31 H 0.22 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.08 0.32 7.76 -51.92 -0.40 -0.08 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.51 7.70 -51.93 -0.40 0.11 16 35 H 0.09 0.54 7.95 -51.93 -0.41 0.12 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.12 7.00 -51.93 -0.36 0.76 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.38 9.44 6.84 -40.82 -0.28 9.16 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.09 1.34 7.15 -51.93 -0.37 0.97 16 47 H 0.08 0.56 5.97 -51.93 -0.31 0.25 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 394.90 15.07 5.95 5.95 Total: -1.00 -37.29 394.90 -9.74 -47.03 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.56 Total: 3.48 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -2.21 Total: 5.04 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -0.13 Total: -64.90 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.77 Total: -13.42 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.29 -9.74 -47.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206742454.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.953 kcal (2) G-P(sol) polarization free energy of solvation -37.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds