Wall clock time and date at job start Tue Mar 31 2020 21:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40441 * 126.82458 * 2 1 4 4 C 1.30714 * 106.79101 * 179.97438 * 3 2 1 5 5 N 1.33244 * 108.94611 * 359.76635 * 4 3 2 6 6 C 1.30834 * 109.82911 * 0.39618 * 5 4 3 7 7 C 1.50698 * 125.95880 * 179.86897 * 6 5 4 8 8 O 1.42903 * 109.46975 * 269.68975 * 7 6 5 9 9 C 1.42905 * 113.99721 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.46808 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00306 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00030 * 179.97438 * 10 9 8 13 13 C 1.46926 * 120.63336 * 180.02562 * 12 10 9 14 14 C 1.53191 * 108.89109 * 233.68039 * 13 12 10 15 15 C 1.53035 * 109.31327 * 305.29292 * 14 13 12 16 16 C 1.53007 * 109.46118 * 181.38770 * 15 14 13 17 17 N 1.46500 * 109.47181 * 174.99781 * 16 15 14 18 18 C 1.36933 * 119.99958 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00261 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00222 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99893 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00067 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47238 * 60.00026 * 22 20 18 24 24 H 1.48501 * 109.46861 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47107 * 299.99583 * 22 20 18 26 26 C 1.53038 * 109.54175 * 61.36680 * 15 14 13 27 27 C 1.47207 * 120.81118 * 0.14238 * 12 10 9 28 28 H 1.09001 * 109.47061 * 270.04648 * 1 2 3 29 29 H 1.09002 * 109.46684 * 30.03640 * 1 2 3 30 30 H 1.08996 * 109.47510 * 150.03888 * 1 2 3 31 31 H 1.07995 * 125.52552 * 180.02562 * 4 3 2 32 32 H 1.09011 * 109.46857 * 149.69749 * 7 6 5 33 33 H 1.08992 * 109.47443 * 29.69762 * 7 6 5 34 34 H 1.08992 * 109.47241 * 60.00227 * 9 8 7 35 35 H 1.09000 * 109.47072 * 299.99682 * 9 8 7 36 36 H 1.09002 * 109.58861 * 113.82042 * 13 12 10 37 37 H 1.08996 * 109.58519 * 353.53933 * 13 12 10 38 38 H 1.09003 * 109.49975 * 65.24379 * 14 13 12 39 39 H 1.09000 * 109.49553 * 185.30642 * 14 13 12 40 40 H 1.09005 * 109.46002 * 301.35718 * 15 14 13 41 41 H 1.08996 * 109.46924 * 295.00300 * 16 15 14 42 42 H 1.09004 * 109.46756 * 54.99920 * 16 15 14 43 43 H 0.97000 * 120.00269 * 359.97438 * 17 16 15 44 44 H 0.96999 * 120.00395 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.49557 * 58.58503 * 26 15 14 46 46 H 1.08996 * 109.50003 * 178.68400 * 26 15 14 47 47 H 1.08996 * 109.53610 * 6.53286 * 27 12 10 48 48 H 1.09002 * 109.68003 * 246.22753 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1242 0.0000 4 6 3.5349 0.6764 0.0006 5 7 3.5096 -0.6558 0.0060 6 6 2.2706 -1.0762 0.0005 7 6 1.8246 -2.5156 0.0012 8 8 1.6836 -2.9712 -1.3459 9 6 1.2614 -4.3319 -1.4580 10 6 1.1470 -4.7039 -2.9139 11 8 1.4015 -3.8844 -3.7710 12 7 0.7619 -5.9472 -3.2635 13 6 0.6463 -6.3251 -4.6786 14 6 -0.7533 -6.8965 -4.9267 15 6 -1.0114 -8.0454 -3.9493 16 6 -2.3950 -8.6414 -4.2171 17 7 -2.5945 -9.8154 -3.3638 18 6 -3.7682 -10.5176 -3.4290 19 1 -4.5471 -10.2057 -4.1091 20 6 -3.9576 -11.6297 -2.6201 21 7 -3.0087 -12.0095 -1.7908 22 14 -5.5585 -12.5881 -2.7095 23 1 -5.7466 -13.1101 -4.0869 24 1 -5.5106 -13.7221 -1.7520 25 1 -6.6912 -11.6934 -2.3602 26 6 -0.9521 -7.5192 -2.5135 27 6 0.4457 -6.9549 -2.2380 28 1 -0.3633 0.0008 1.0277 29 1 -0.3633 0.8897 -0.5144 30 1 -0.3634 -0.8903 -0.5132 31 1 4.4255 1.2872 0.0011 32 1 0.8668 -2.5990 0.5151 33 1 2.5670 -3.1259 0.5154 34 1 0.2920 -4.4525 -0.9746 35 1 1.9920 -4.9801 -0.9741 36 1 1.3964 -7.0787 -4.9181 37 1 0.7984 -5.4462 -5.3050 38 1 -1.4977 -6.1150 -4.7741 39 1 -0.8189 -7.2667 -5.9498 40 1 -0.2519 -8.8154 -4.0853 41 1 -3.1600 -7.8972 -3.9960 42 1 -2.4670 -8.9366 -5.2639 43 1 -1.8952 -10.0953 -2.7526 44 1 -3.1408 -12.7868 -1.2258 45 1 -1.6946 -6.7318 -2.3837 46 1 -1.1591 -8.3332 -1.8188 47 1 0.4646 -6.4902 -1.2523 48 1 1.1792 -7.7603 -2.2764 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206742454.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:19 Heat of formation + Delta-G solvation = 3.468170 kcal Electronic energy + Delta-G solvation = -28644.310903 eV Core-core repulsion = 24542.988833 eV Total energy + Delta-G solvation = -4101.322070 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.17504 -41.29799 -39.30310 -38.40304 -36.52210 -35.09645 -34.49992 -33.15407 -32.54212 -31.88241 -29.86970 -28.60418 -27.87526 -27.02458 -25.35604 -24.25201 -23.19715 -23.10178 -21.74312 -21.51088 -20.10693 -19.15113 -18.58057 -18.07820 -17.77003 -17.27790 -16.99476 -16.67975 -16.43780 -15.96535 -15.90028 -15.57602 -15.37918 -15.36356 -15.25786 -14.75148 -14.34649 -14.20010 -14.09793 -13.98279 -13.89481 -13.55771 -13.27544 -13.08898 -13.02895 -12.89656 -12.70908 -12.61674 -12.21732 -12.14416 -11.93149 -11.65116 -11.48574 -11.29443 -11.17463 -10.93820 -10.88805 -10.88000 -10.76498 -10.64670 -9.68007 -8.94954 -7.92643 -5.19861 0.35021 1.28225 1.49619 1.51320 1.53793 1.57522 1.60867 1.92611 2.58180 2.70857 3.21927 3.40781 3.48406 3.55513 3.77466 3.80379 3.83064 3.94787 4.13812 4.14910 4.17785 4.26108 4.30228 4.32554 4.34007 4.42941 4.47215 4.53336 4.61460 4.62550 4.76562 4.83381 4.87377 4.99029 5.08011 5.10294 5.19744 5.20794 5.31093 5.36873 5.50017 5.56946 5.57783 5.69263 5.87111 6.30451 6.37292 6.98075 7.11895 7.37616 8.14063 8.38684 9.30218 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019785 B = 0.001851 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.870693 B =15122.487466 C =15777.743072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.370 5.370 3 N -0.344 5.344 4 C 0.192 3.808 5 N -0.559 5.559 6 C 0.268 3.732 7 C 0.140 3.860 8 O -0.391 6.391 9 C 0.047 3.953 10 C 0.511 3.489 11 O -0.579 6.579 12 N -0.604 5.604 13 C 0.115 3.885 14 C -0.115 4.115 15 C -0.085 4.085 16 C 0.156 3.844 17 N -0.740 5.740 18 C -0.247 4.247 19 H 0.070 0.930 20 C -0.071 4.071 21 N -0.965 5.965 22 Si 0.969 3.031 23 H -0.281 1.281 24 H -0.294 1.294 25 H -0.279 1.279 26 C -0.120 4.120 27 C 0.109 3.891 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.247 0.753 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.015 0.985 42 H 0.014 0.986 43 H 0.377 0.623 44 H 0.251 0.749 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.116 0.884 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.079 20.426 6.211 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.162 5.162 3 N -0.173 5.173 4 C -0.110 4.110 5 N -0.289 5.289 6 C -0.009 4.009 7 C 0.062 3.938 8 O -0.309 6.309 9 C -0.032 4.032 10 C 0.300 3.700 11 O -0.459 6.459 12 N -0.338 5.338 13 C -0.007 4.007 14 C -0.153 4.153 15 C -0.104 4.104 16 C 0.030 3.970 17 N -0.383 5.383 18 C -0.379 4.379 19 H 0.088 0.912 20 C -0.264 4.264 21 N -0.615 5.615 22 Si 0.798 3.202 23 H -0.208 1.208 24 H -0.221 1.221 25 H -0.206 1.206 26 C -0.159 4.159 27 C -0.012 4.012 28 H 0.125 0.875 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.263 0.737 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.033 0.967 42 H 0.032 0.968 43 H 0.210 0.790 44 H 0.060 0.940 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.134 0.866 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.052 21.485 5.538 24.358 hybrid contribution -0.883 -1.002 0.075 1.338 sum 9.168 20.484 5.614 23.133 Atomic orbital electron populations 1.22391 0.71312 1.06343 1.05775 1.50544 1.09467 1.03404 1.52811 1.77993 1.02842 1.09347 1.27158 1.26617 0.96623 0.90264 0.97484 1.70447 1.20774 1.12541 1.25114 1.24294 0.86319 0.92970 0.97295 1.20969 1.03772 0.84586 0.84516 1.88009 1.89480 1.27535 1.25830 1.22483 1.03953 0.83843 0.92885 1.20813 0.76222 0.81292 0.91723 1.90709 1.51305 1.50351 1.53499 1.48233 1.66291 1.11175 1.08116 1.21576 0.97167 1.00428 0.81548 1.21801 0.96428 0.97205 0.99896 1.21198 0.96401 0.96994 0.95821 1.20817 0.95206 0.88011 0.92992 1.42514 1.17405 1.31032 1.47396 1.19560 0.94557 1.06456 1.17315 0.91201 1.25470 1.01181 1.00212 0.99521 1.69770 1.34633 1.28475 1.28646 0.85287 0.79851 0.78006 0.77056 1.20772 1.22064 1.20556 1.21837 0.96969 1.00631 0.96438 1.22062 0.96213 0.91498 0.91461 0.87463 0.88506 0.87251 0.73670 0.86658 0.87245 0.86209 0.86447 0.90147 0.90296 0.92043 0.89821 0.91211 0.96706 0.96800 0.78988 0.93975 0.91868 0.91212 0.86590 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 11.16 127.77 1.43 2.19 16 2 N -0.37 -6.85 4.04 -359.86 -1.45 -8.30 16 3 N -0.34 -7.59 12.70 -61.25 -0.78 -8.37 16 4 C 0.19 3.89 13.03 180.76 2.36 6.25 16 5 N -0.56 -12.99 11.19 -191.78 -2.15 -15.13 16 6 C 0.27 5.23 7.61 138.22 1.05 6.28 16 7 C 0.14 1.70 6.06 71.24 0.43 2.13 16 8 O -0.39 -7.50 9.86 -129.94 -1.28 -8.78 16 9 C 0.05 0.64 4.77 71.23 0.34 0.98 16 10 C 0.51 11.70 7.78 87.66 0.68 12.38 16 11 O -0.58 -19.27 15.91 15.99 0.25 -19.02 16 12 N -0.60 -12.20 2.98 -818.10 -2.44 -14.64 16 13 C 0.12 2.50 6.42 86.36 0.55 3.05 16 14 C -0.11 -2.62 5.36 30.67 0.16 -2.46 16 15 C -0.09 -2.33 2.19 -10.77 -0.02 -2.35 16 16 C 0.16 5.79 5.65 86.38 0.49 6.28 16 17 N -0.74 -35.27 5.32 -343.44 -1.83 -37.10 16 18 C -0.25 -13.33 9.99 84.03 0.84 -12.49 16 19 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 20 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 21 N -0.96 -56.30 13.06 21.65 0.28 -56.01 16 22 Si 0.97 44.70 29.55 68.60 2.03 46.73 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 C -0.12 -2.86 5.25 30.69 0.16 -2.69 16 27 C 0.11 1.77 6.35 86.32 0.55 2.32 16 28 H 0.11 0.46 8.14 -2.39 -0.02 0.45 16 29 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.11 0.72 7.72 -2.39 -0.02 0.70 16 31 H 0.25 2.92 8.06 -2.91 -0.02 2.89 16 32 H 0.12 0.47 7.76 -2.38 -0.02 0.45 16 33 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.12 0.82 7.70 -2.39 -0.02 0.80 16 35 H 0.12 0.89 7.95 -2.39 -0.02 0.87 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 1.94 7.00 -2.39 -0.02 1.92 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.38 18.68 6.84 -92.71 -0.63 18.05 16 44 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 45 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.07 1.99 7.15 -2.39 -0.02 1.97 16 47 H 0.12 1.07 5.97 -2.39 -0.01 1.06 16 48 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -82.62 394.90 2.46 -80.16 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.33 Total: 22.09 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 9.49 Total: 18.38 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -8.36 Total: -139.56 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -1.03 Total: -27.80 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -82.62 2.46 -80.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206742454.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.627 kcal (2) G-P(sol) polarization free energy of solvation -82.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds