Wall clock time and date at job start Tue Mar 31 2020 21:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97935 * 2 1 4 4 N 1.30526 * 107.30545 * 179.83284 * 3 2 1 5 5 N 1.28600 * 109.67197 * 0.43817 * 4 3 2 6 6 C 1.30517 * 109.67250 * 359.72320 * 5 4 3 7 7 C 1.50698 * 126.34522 * 180.02562 * 6 5 4 8 8 O 1.42904 * 109.47302 * 269.95645 * 7 6 5 9 9 C 1.42891 * 114.00067 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47115 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99843 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00198 * 179.97438 * 10 9 8 13 13 C 1.46927 * 120.62894 * 359.72098 * 12 10 9 14 14 C 1.53625 * 108.54133 * 126.36805 * 13 12 10 15 15 C 1.53039 * 109.24515 * 54.85627 * 14 13 12 16 16 C 1.52999 * 109.46621 * 178.48903 * 15 14 13 17 17 N 1.46505 * 109.46859 * 295.07126 * 16 15 14 18 18 C 1.36938 * 119.99574 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00100 * 0.02562 * 18 17 16 20 20 C 1.38808 * 119.99836 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00101 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00131 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47171 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47035 * 120.00533 * 22 20 18 25 25 H 1.48498 * 109.47472 * 240.00252 * 22 20 18 26 26 C 1.53044 * 109.53567 * 298.51297 * 15 14 13 27 27 C 1.46929 * 120.63196 * 180.02562 * 12 10 9 28 28 H 1.09002 * 109.47391 * 269.68706 * 1 2 3 29 29 H 1.09001 * 109.46813 * 149.68762 * 1 2 3 30 30 H 1.09004 * 109.47041 * 29.68889 * 1 2 3 31 31 H 1.07996 * 126.34608 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.47086 * 29.95554 * 7 6 5 33 33 H 1.09004 * 109.47234 * 149.95544 * 7 6 5 34 34 H 1.09002 * 109.47146 * 300.00000 * 9 8 7 35 35 H 1.09002 * 109.47416 * 60.00238 * 9 8 7 36 36 H 1.08995 * 109.58761 * 246.20091 * 13 12 10 37 37 H 1.08995 * 109.58768 * 6.62770 * 13 12 10 38 38 H 1.09000 * 109.63690 * 294.86262 * 14 13 12 39 39 H 1.09000 * 109.43348 * 174.72813 * 14 13 12 40 40 H 1.09005 * 109.44981 * 58.52173 * 15 14 13 41 41 H 1.09000 * 109.46462 * 55.06871 * 16 15 14 42 42 H 1.08997 * 109.47457 * 175.06868 * 16 15 14 43 43 H 0.96995 * 120.00281 * 359.97438 * 17 16 15 44 44 H 0.97003 * 120.00031 * 179.97438 * 21 20 18 45 45 H 1.08992 * 109.49409 * 301.40856 * 26 15 14 46 46 H 1.09005 * 109.52273 * 181.32554 * 26 15 14 47 47 H 1.08996 * 109.58539 * 353.37089 * 27 12 10 48 48 H 1.09001 * 109.58179 * 113.65902 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0036 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 -0.0059 7 6 1.8477 -2.5260 -0.0132 8 8 1.7103 -2.9753 -1.3628 9 6 1.3010 -4.3391 -1.4825 10 6 1.1882 -4.7035 -2.9405 11 8 1.4337 -3.8766 -3.7930 12 7 0.8146 -5.9484 -3.2970 13 6 0.5198 -6.9628 -2.2757 14 6 -0.8778 -7.5391 -2.5488 15 6 -0.9367 -8.0598 -3.9867 16 6 -2.3147 -8.6691 -4.2523 17 7 -2.4988 -9.8489 -3.4034 18 6 -3.6653 -10.5633 -3.4677 19 1 -4.4494 -10.2572 -4.1444 20 6 -3.8396 -11.6814 -2.6638 21 7 -2.8838 -12.0547 -1.8394 22 14 -5.4305 -12.6563 -2.7519 23 1 -6.3374 -12.0347 -3.7501 24 1 -5.1329 -14.0538 -3.1567 25 1 -6.0858 -12.6559 -1.4193 26 6 -0.6941 -6.9038 -4.9599 27 6 0.7007 -6.3188 -4.7142 28 1 -0.3634 -0.0056 1.0276 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9701 2.1169 -0.0004 32 1 2.5963 -3.1320 0.4970 33 1 0.8911 -2.6214 0.5006 34 1 2.0380 -4.9831 -1.0026 35 1 0.3330 -4.4717 -0.9994 36 1 1.2626 -7.7588 -2.3263 37 1 0.5404 -6.5032 -1.2876 38 1 -1.6282 -6.7603 -2.4129 39 1 -1.0738 -8.3583 -1.8569 40 1 -0.1695 -8.8210 -4.1287 41 1 -3.0868 -7.9340 -4.0252 42 1 -2.3874 -8.9605 -5.3001 43 1 -1.7945 -10.1240 -2.7959 44 1 -3.0057 -12.8358 -1.2773 45 1 -1.4461 -6.1310 -4.8013 46 1 -0.7594 -7.2703 -5.9844 47 1 0.8407 -5.4343 -5.3355 48 1 1.4596 -7.0618 -4.9597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206743392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:09 Heat of formation + Delta-G solvation = 18.060957 kcal Electronic energy + Delta-G solvation = -28671.823971 eV Core-core repulsion = 24571.134692 eV Total energy + Delta-G solvation = -4100.689280 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.49775 -40.38815 -38.46251 -37.42402 -35.46964 -35.00413 -33.01060 -32.11984 -31.31454 -30.37798 -28.84937 -28.13444 -26.92623 -26.12087 -23.74601 -23.28178 -22.79568 -21.83816 -21.42910 -20.38713 -19.15426 -17.98907 -17.50092 -17.20746 -16.95683 -16.75847 -16.42246 -15.77742 -15.56418 -15.10691 -14.93006 -14.71926 -14.31250 -14.00937 -13.92420 -13.77721 -13.70914 -13.45830 -13.27385 -12.88584 -12.64332 -12.47151 -12.31365 -12.26159 -11.88154 -11.86276 -11.23513 -11.05523 -10.90158 -10.77829 -10.62976 -10.46813 -10.41796 -10.35664 -10.28261 -10.02758 -9.87662 -9.70716 -9.67311 -8.92977 -8.71936 -6.96900 -5.82538 -3.10595 1.22037 1.99575 2.34002 2.43664 2.68169 3.38855 3.41719 3.45146 3.46949 3.95476 4.05486 4.17546 4.33667 4.38638 4.50504 4.53925 4.61195 4.69488 4.79195 4.79668 4.83581 4.96516 5.00445 5.10313 5.10821 5.28703 5.37241 5.40950 5.50048 5.57578 5.68280 5.73350 5.87498 5.89312 6.01569 6.12101 6.20732 6.27599 6.36006 6.38243 6.49298 6.56683 6.74611 6.85512 7.23998 7.65883 8.01781 8.33314 8.36954 9.48325 10.06007 10.40681 11.40450 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.001855 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.119490 B =15091.886735 C =15746.366036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.468 5.468 3 C 0.156 3.844 4 N -0.297 5.297 5 N -0.271 5.271 6 C 0.175 3.825 7 C 0.149 3.851 8 O -0.358 6.358 9 C 0.045 3.955 10 C 0.517 3.483 11 O -0.526 6.526 12 N -0.607 5.607 13 C 0.103 3.897 14 C -0.125 4.125 15 C -0.094 4.094 16 C 0.158 3.842 17 N -0.732 5.732 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.292 1.292 26 C -0.126 4.126 27 C 0.114 3.886 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.222 0.778 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.895 22.170 5.239 23.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.159 5.159 3 C -0.132 4.132 4 N -0.137 5.137 5 N -0.113 5.113 6 C -0.092 4.092 7 C 0.070 3.930 8 O -0.275 6.275 9 C -0.035 4.035 10 C 0.303 3.697 11 O -0.402 6.402 12 N -0.342 5.342 13 C -0.020 4.020 14 C -0.163 4.163 15 C -0.113 4.113 16 C 0.030 3.970 17 N -0.376 5.376 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.164 4.164 27 C -0.007 4.007 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.238 0.762 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.108 0.892 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.365 22.686 4.566 24.606 hybrid contribution -2.327 -0.851 0.461 2.520 sum 6.038 21.835 5.027 23.206 Atomic orbital electron populations 1.22208 0.74888 1.06005 1.04313 1.46191 1.09503 1.06683 1.53550 1.26519 0.87168 0.94984 1.04494 1.74306 1.18115 1.03073 1.18182 1.74277 1.16908 1.03319 1.16817 1.24257 0.87443 0.91384 1.06119 1.20510 1.01216 0.86098 0.85167 1.88070 1.89326 1.25959 1.24121 1.22326 1.01316 0.84230 0.95594 1.20055 0.77405 0.81973 0.90239 1.90726 1.48829 1.48560 1.52038 1.48098 1.67479 1.10573 1.08046 1.22029 0.98376 0.91157 0.90404 1.22008 0.94776 1.01336 0.98197 1.21312 0.99551 0.96478 0.93993 1.20670 0.92528 0.89488 0.94293 1.42378 1.18746 1.29188 1.47323 1.19281 0.93805 1.05705 1.18134 0.91202 1.24728 0.98104 0.98899 0.99328 1.69659 1.32674 1.27845 1.28122 0.86126 0.82964 0.79987 0.77170 1.20594 1.21864 1.21893 1.21922 0.96125 0.98238 1.00137 1.21650 0.97502 1.00743 0.80844 0.89602 0.88632 0.88556 0.76212 0.88964 0.90869 0.89504 0.89695 0.90626 0.90220 0.91729 0.89201 0.90863 0.96442 0.96317 0.78287 0.93579 0.91586 0.90520 0.89185 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.21 10.89 59.85 0.65 0.87 16 2 N -0.47 -3.57 3.15 -122.69 -0.39 -3.96 16 3 C 0.16 1.26 12.74 -89.94 -1.15 0.12 16 4 N -0.30 -3.76 12.21 29.69 0.36 -3.40 16 5 N -0.27 -3.70 12.21 32.80 0.40 -3.30 16 6 C 0.18 1.82 7.66 -154.99 -1.19 0.64 16 7 C 0.15 1.16 6.11 36.00 0.22 1.38 16 8 O -0.36 -3.97 9.86 -55.14 -0.54 -4.51 16 9 C 0.04 0.40 4.76 36.01 0.17 0.57 16 10 C 0.52 6.54 7.78 -10.99 -0.09 6.46 16 11 O -0.53 -8.94 15.91 -14.35 -0.23 -9.16 16 12 N -0.61 -6.92 2.97 -172.48 -0.51 -7.43 16 13 C 0.10 1.02 6.37 -3.48 -0.02 0.99 16 14 C -0.12 -1.60 5.26 -26.39 -0.14 -1.74 16 15 C -0.09 -1.35 2.19 -90.58 -0.20 -1.55 16 16 C 0.16 2.96 5.65 -4.04 -0.02 2.94 16 17 N -0.73 -17.48 5.32 -59.91 -0.32 -17.80 16 18 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -27.23 13.06 55.49 0.72 -26.51 16 22 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C -0.13 -1.52 5.36 -26.59 -0.14 -1.66 16 27 C 0.11 1.33 6.43 -3.69 -0.02 1.31 16 28 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.09 0.33 7.81 -51.93 -0.41 -0.08 16 30 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.22 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.33 7.86 -51.93 -0.41 -0.08 16 34 H 0.09 0.57 7.93 -51.93 -0.41 0.16 16 35 H 0.09 0.53 7.70 -51.93 -0.40 0.13 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.58 5.93 -51.93 -0.31 0.27 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 1.34 7.15 -51.93 -0.37 0.97 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.38 9.47 6.84 -40.82 -0.28 9.19 16 44 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.09 1.13 7.00 -51.93 -0.36 0.77 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 394.25 15.07 5.94 5.94 Total: -1.00 -38.43 394.25 -9.32 -47.75 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.57 Total: 2.33 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.17 Total: 3.21 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.27 Total: -62.39 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.77 Total: -13.68 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.43 -9.32 -47.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206743392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.815 kcal (2) G-P(sol) polarization free energy of solvation -38.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds