Wall clock time and date at job start Tue Mar 31 2020 21:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97935 * 2 1 4 4 N 1.30526 * 107.30545 * 179.83284 * 3 2 1 5 5 N 1.28600 * 109.67197 * 0.43817 * 4 3 2 6 6 C 1.30517 * 109.67250 * 359.72320 * 5 4 3 7 7 C 1.50698 * 126.34522 * 180.02562 * 6 5 4 8 8 O 1.42904 * 109.47302 * 269.95645 * 7 6 5 9 9 C 1.42891 * 114.00067 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47115 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99843 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00198 * 179.97438 * 10 9 8 13 13 C 1.46927 * 120.62894 * 359.72098 * 12 10 9 14 14 C 1.53625 * 108.54133 * 126.36805 * 13 12 10 15 15 C 1.53039 * 109.24515 * 54.85627 * 14 13 12 16 16 C 1.52999 * 109.46621 * 178.48903 * 15 14 13 17 17 N 1.46505 * 109.46859 * 295.07126 * 16 15 14 18 18 C 1.36938 * 119.99574 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00100 * 0.02562 * 18 17 16 20 20 C 1.38808 * 119.99836 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00101 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00131 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47171 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47035 * 120.00533 * 22 20 18 25 25 H 1.48498 * 109.47472 * 240.00252 * 22 20 18 26 26 C 1.53044 * 109.53567 * 298.51297 * 15 14 13 27 27 C 1.46929 * 120.63196 * 180.02562 * 12 10 9 28 28 H 1.09002 * 109.47391 * 269.68706 * 1 2 3 29 29 H 1.09001 * 109.46813 * 149.68762 * 1 2 3 30 30 H 1.09004 * 109.47041 * 29.68889 * 1 2 3 31 31 H 1.07996 * 126.34608 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.47086 * 29.95554 * 7 6 5 33 33 H 1.09004 * 109.47234 * 149.95544 * 7 6 5 34 34 H 1.09002 * 109.47146 * 300.00000 * 9 8 7 35 35 H 1.09002 * 109.47416 * 60.00238 * 9 8 7 36 36 H 1.08995 * 109.58761 * 246.20091 * 13 12 10 37 37 H 1.08995 * 109.58768 * 6.62770 * 13 12 10 38 38 H 1.09000 * 109.63690 * 294.86262 * 14 13 12 39 39 H 1.09000 * 109.43348 * 174.72813 * 14 13 12 40 40 H 1.09005 * 109.44981 * 58.52173 * 15 14 13 41 41 H 1.09000 * 109.46462 * 55.06871 * 16 15 14 42 42 H 1.08997 * 109.47457 * 175.06868 * 16 15 14 43 43 H 0.96995 * 120.00281 * 359.97438 * 17 16 15 44 44 H 0.97003 * 120.00031 * 179.97438 * 21 20 18 45 45 H 1.08992 * 109.49409 * 301.40856 * 26 15 14 46 46 H 1.09005 * 109.52273 * 181.32554 * 26 15 14 47 47 H 1.08996 * 109.58539 * 353.37089 * 27 12 10 48 48 H 1.09001 * 109.58179 * 113.65902 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0036 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 -0.0059 7 6 1.8477 -2.5260 -0.0132 8 8 1.7103 -2.9753 -1.3628 9 6 1.3010 -4.3391 -1.4825 10 6 1.1882 -4.7035 -2.9405 11 8 1.4337 -3.8766 -3.7930 12 7 0.8146 -5.9484 -3.2970 13 6 0.5198 -6.9628 -2.2757 14 6 -0.8778 -7.5391 -2.5488 15 6 -0.9367 -8.0598 -3.9867 16 6 -2.3147 -8.6691 -4.2523 17 7 -2.4988 -9.8489 -3.4034 18 6 -3.6653 -10.5633 -3.4677 19 1 -4.4494 -10.2572 -4.1444 20 6 -3.8396 -11.6814 -2.6638 21 7 -2.8838 -12.0547 -1.8394 22 14 -5.4305 -12.6563 -2.7519 23 1 -6.3374 -12.0347 -3.7501 24 1 -5.1329 -14.0538 -3.1567 25 1 -6.0858 -12.6559 -1.4193 26 6 -0.6941 -6.9038 -4.9599 27 6 0.7007 -6.3188 -4.7142 28 1 -0.3634 -0.0056 1.0276 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9701 2.1169 -0.0004 32 1 2.5963 -3.1320 0.4970 33 1 0.8911 -2.6214 0.5006 34 1 2.0380 -4.9831 -1.0026 35 1 0.3330 -4.4717 -0.9994 36 1 1.2626 -7.7588 -2.3263 37 1 0.5404 -6.5032 -1.2876 38 1 -1.6282 -6.7603 -2.4129 39 1 -1.0738 -8.3583 -1.8569 40 1 -0.1695 -8.8210 -4.1287 41 1 -3.0868 -7.9340 -4.0252 42 1 -2.3874 -8.9605 -5.3001 43 1 -1.7945 -10.1240 -2.7959 44 1 -3.0057 -12.8358 -1.2773 45 1 -1.4461 -6.1310 -4.8013 46 1 -0.7594 -7.2703 -5.9844 47 1 0.8407 -5.4343 -5.3355 48 1 1.4596 -7.0618 -4.9597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206743392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:08 Heat of formation + Delta-G solvation = -7.109954 kcal Electronic energy + Delta-G solvation = -28672.915464 eV Core-core repulsion = 24571.134692 eV Total energy + Delta-G solvation = -4101.780772 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.15091 -41.32698 -39.31745 -38.42052 -36.54080 -36.02423 -34.51876 -32.91547 -32.43015 -31.86947 -29.67416 -28.57952 -28.00414 -27.06311 -25.36917 -24.27894 -23.41817 -23.20945 -22.05615 -21.53433 -20.13327 -19.16546 -18.61685 -18.09078 -17.78513 -17.43123 -17.14637 -16.69165 -16.55641 -16.24958 -15.83610 -15.70381 -15.46115 -15.37871 -15.28662 -14.71080 -14.49250 -14.28830 -14.07069 -13.91519 -13.66844 -13.56333 -13.20433 -13.10997 -12.98833 -12.90222 -12.76939 -12.59771 -12.19121 -12.10692 -11.94749 -11.65886 -11.50422 -11.46330 -11.30601 -11.15320 -10.92961 -10.88075 -10.80404 -10.44289 -9.69299 -8.95743 -7.93773 -5.20994 0.60886 1.48479 1.49038 1.49437 1.51997 1.58816 1.66325 1.88603 2.57249 2.76884 3.30453 3.40052 3.56874 3.67902 3.77833 3.81625 3.84975 3.92916 3.95999 4.11846 4.13292 4.22078 4.25376 4.31098 4.38445 4.41291 4.45394 4.57525 4.61245 4.68389 4.75492 4.81778 4.85482 4.86513 4.97539 5.06653 5.08178 5.09437 5.19983 5.30124 5.49635 5.56155 5.56858 5.82916 5.91116 6.29681 6.35473 7.09998 7.36717 7.63415 8.13062 8.37478 9.29551 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.001855 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.119490 B =15091.886735 C =15746.366036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.466 5.466 3 C 0.168 3.832 4 N -0.352 5.352 5 N -0.325 5.325 6 C 0.165 3.835 7 C 0.149 3.851 8 O -0.392 6.392 9 C 0.047 3.953 10 C 0.510 3.490 11 O -0.579 6.579 12 N -0.604 5.604 13 C 0.109 3.891 14 C -0.120 4.120 15 C -0.085 4.085 16 C 0.156 3.844 17 N -0.741 5.741 18 C -0.244 4.244 19 H 0.071 0.929 20 C -0.073 4.073 21 N -0.965 5.965 22 Si 0.969 3.031 23 H -0.270 1.270 24 H -0.295 1.295 25 H -0.292 1.292 26 C -0.114 4.114 27 C 0.115 3.885 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.265 0.735 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.085 0.915 37 H 0.115 0.885 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.377 0.623 44 H 0.251 0.749 45 H 0.062 0.938 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.585 22.863 6.132 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.156 5.156 3 C -0.120 4.120 4 N -0.191 5.191 5 N -0.167 5.167 6 C -0.105 4.105 7 C 0.070 3.930 8 O -0.310 6.310 9 C -0.032 4.032 10 C 0.299 3.701 11 O -0.458 6.458 12 N -0.338 5.338 13 C -0.013 4.013 14 C -0.158 4.158 15 C -0.104 4.104 16 C 0.030 3.970 17 N -0.384 5.384 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.265 4.265 21 N -0.616 5.616 22 Si 0.798 3.202 23 H -0.194 1.194 24 H -0.222 1.222 25 H -0.219 1.219 26 C -0.153 4.153 27 C -0.007 4.007 28 H 0.128 0.872 29 H 0.112 0.888 30 H 0.136 0.864 31 H 0.280 0.720 32 H 0.119 0.881 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.034 0.966 42 H 0.033 0.967 43 H 0.210 0.790 44 H 0.060 0.940 45 H 0.080 0.920 46 H 0.102 0.898 47 H 0.098 0.902 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.029 23.385 5.450 25.019 hybrid contribution -1.985 -1.008 0.125 2.230 sum 5.043 22.377 5.574 23.606 Atomic orbital electron populations 1.22566 0.72144 1.07048 1.06195 1.46473 1.11033 1.05720 1.52356 1.27330 0.86161 0.96721 1.01800 1.74168 1.20920 1.03184 1.20845 1.74141 1.19333 1.04158 1.19068 1.24739 0.87237 0.93072 1.05403 1.20770 1.03410 0.84679 0.84104 1.88013 1.89817 1.27059 1.26127 1.22463 1.03907 0.83931 0.92896 1.20806 0.76169 0.81425 0.91665 1.90702 1.51270 1.50005 1.53844 1.48173 1.66753 1.10707 1.08139 1.22103 0.96411 0.91232 0.91565 1.21902 0.96881 1.00592 0.96429 1.21201 0.96510 0.96923 0.95804 1.20816 0.95239 0.87895 0.93057 1.42540 1.17710 1.30293 1.47852 1.19635 0.94737 1.05797 1.17428 0.91116 1.25477 1.01158 1.00235 0.99639 1.69791 1.34406 1.28308 1.29108 0.85143 0.79670 0.78232 0.77125 1.19420 1.22194 1.21932 1.21805 0.96420 0.97104 0.99938 1.21599 0.97270 1.00466 0.81373 0.87223 0.88763 0.86443 0.71954 0.88090 0.87049 0.86765 0.86322 0.89715 0.86679 0.91798 0.91285 0.91260 0.96633 0.96730 0.79010 0.93996 0.91960 0.89768 0.90247 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.20 10.89 127.77 1.39 1.59 16 2 N -0.47 -6.29 3.15 -542.07 -1.71 -7.99 16 3 C 0.17 2.52 12.74 180.11 2.30 4.82 16 4 N -0.35 -9.08 12.21 -59.99 -0.73 -9.81 16 5 N -0.32 -9.09 12.21 -50.16 -0.61 -9.71 16 6 C 0.16 3.30 7.66 137.98 1.06 4.35 16 7 C 0.15 2.01 6.11 71.24 0.43 2.44 16 8 O -0.39 -8.03 9.86 -129.94 -1.28 -9.31 16 9 C 0.05 0.69 4.76 71.24 0.34 1.03 16 10 C 0.51 12.10 7.78 87.66 0.68 12.78 16 11 O -0.58 -19.63 15.91 16.01 0.25 -19.37 16 12 N -0.60 -12.56 2.97 -818.00 -2.43 -14.98 16 13 C 0.11 1.83 6.37 86.51 0.55 2.39 16 14 C -0.12 -2.88 5.26 30.82 0.16 -2.71 16 15 C -0.09 -2.35 2.19 -10.77 -0.02 -2.37 16 16 C 0.16 5.80 5.65 86.38 0.49 6.29 16 17 N -0.74 -35.33 5.32 -343.45 -1.83 -37.16 16 18 C -0.24 -13.17 9.99 84.03 0.84 -12.33 16 19 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 20 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 21 N -0.97 -56.51 13.06 21.65 0.28 -56.22 16 22 Si 0.97 44.77 29.55 68.60 2.03 46.80 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 C -0.11 -2.62 5.36 30.69 0.16 -2.45 16 27 C 0.12 2.54 6.43 86.38 0.56 3.09 16 28 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.09 0.38 7.81 -2.39 -0.02 0.36 16 30 H 0.12 -0.11 8.14 -2.38 -0.02 -0.13 16 31 H 0.26 0.98 8.06 -2.91 -0.02 0.96 16 32 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.11 0.58 7.86 -2.39 -0.02 0.56 16 34 H 0.11 1.06 7.93 -2.39 -0.02 1.04 16 35 H 0.12 0.94 7.70 -2.39 -0.02 0.92 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.12 1.17 5.93 -2.39 -0.01 1.15 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.99 7.15 -2.39 -0.02 1.98 16 40 H 0.07 1.98 8.14 -2.38 -0.02 1.97 16 41 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.38 18.73 6.84 -92.71 -0.63 18.10 16 44 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 45 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 47 H 0.08 1.97 7.00 -2.39 -0.02 1.95 16 48 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -87.14 394.25 3.72 -83.42 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.33 Total: 19.00 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 9.40 Total: 15.35 kcal Atomic # 7 Polarization: -128.86 SS G_CDS: -7.02 Total: -135.88 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -1.03 Total: -28.68 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -87.14 3.72 -83.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206743392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.308 kcal (2) G-P(sol) polarization free energy of solvation -87.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds