Wall clock time and date at job start Tue Mar 31 2020 21:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99544 * 2 1 4 4 C 1.46893 * 110.99966 * 123.95598 * 2 1 3 5 5 H 1.09005 * 109.46956 * 193.89574 * 4 2 1 6 6 C 1.52998 * 109.47237 * 313.89669 * 4 2 1 7 7 N 1.46498 * 109.47049 * 295.00027 * 6 4 2 8 8 C 1.34951 * 126.03804 * 125.00074 * 7 6 4 9 9 C 1.35314 * 107.74954 * 179.77087 * 8 7 6 10 10 C 1.39870 * 107.91572 * 0.22998 * 9 8 7 11 11 N 1.30830 * 108.20567 * 359.97438 * 10 9 8 12 12 C 1.50697 * 109.47305 * 73.89680 * 4 2 1 13 13 O 1.21289 * 120.00122 * 343.32168 * 12 4 2 14 14 N 1.34776 * 120.00319 * 163.31367 * 12 4 2 15 15 C 1.46498 * 120.00386 * 179.97438 * 14 12 4 16 16 H 1.09005 * 110.63638 * 34.30762 * 15 14 12 17 17 C 1.54326 * 110.72276 * 271.16130 * 15 14 12 18 18 N 1.47022 * 107.26961 * 219.44337 * 17 15 14 19 19 C 1.36937 * 125.64292 * 178.97745 * 18 17 15 20 20 H 1.07997 * 120.00625 * 359.97438 * 19 18 17 21 21 C 1.38821 * 119.99587 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00040 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46886 * 89.99738 * 23 21 19 25 25 H 1.48504 * 109.46849 * 209.99887 * 23 21 19 26 26 H 1.48497 * 109.46965 * 329.99885 * 23 21 19 27 27 C 1.47417 * 108.70620 * 358.93918 * 18 17 15 28 28 C 1.55122 * 104.94497 * 24.00476 * 27 18 17 29 29 H 1.08998 * 111.16566 * 205.13408 * 28 27 18 30 30 O 1.42904 * 110.93652 * 81.21358 * 28 27 18 31 31 H 1.08995 * 109.47190 * 296.04163 * 1 2 3 32 32 H 1.09004 * 109.47396 * 56.05061 * 1 2 3 33 33 H 1.09005 * 109.46820 * 176.04299 * 1 2 3 34 34 H 1.09001 * 109.46910 * 176.17405 * 3 2 1 35 35 H 1.08997 * 109.47331 * 296.17697 * 3 2 1 36 36 H 1.09003 * 109.47334 * 56.17908 * 3 2 1 37 37 H 1.08999 * 109.47027 * 175.00359 * 6 4 2 38 38 H 1.08998 * 109.47108 * 55.00287 * 6 4 2 39 39 H 1.08000 * 126.12417 * 0.03111 * 8 7 6 40 40 H 1.07996 * 126.04037 * 180.24311 * 9 8 7 41 41 H 1.08003 * 125.89614 * 179.97438 * 10 9 8 42 42 H 0.97006 * 119.99996 * 0.02562 * 14 12 4 43 43 H 1.09001 * 109.88139 * 338.86065 * 17 15 14 44 44 H 1.08995 * 109.87804 * 99.87129 * 17 15 14 45 45 H 0.97000 * 119.99833 * 179.97438 * 22 21 19 46 46 H 1.08998 * 110.36840 * 142.96787 * 27 18 17 47 47 H 1.09003 * 110.36803 * 265.18073 * 27 18 17 48 48 H 0.96696 * 113.99735 * 67.96128 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 3.0570 -0.5510 1.2602 6 6 1.2445 -0.3700 2.4103 7 7 1.5237 1.0332 2.7255 8 6 0.6044 2.0040 2.9085 9 6 1.2658 3.1516 3.1852 10 6 2.6364 2.8737 3.1655 11 7 2.7923 1.6048 2.8876 12 6 1.8075 -2.2391 0.8812 13 8 1.0347 -2.6118 0.0239 14 7 2.4984 -3.1425 1.6045 15 6 2.3153 -4.5745 1.3557 16 1 2.1316 -4.7602 0.2975 17 6 1.1638 -5.1355 2.2166 18 7 1.5782 -6.4655 2.6867 19 6 0.8443 -7.2897 3.4973 20 1 -0.1288 -6.9772 3.8464 21 6 1.3511 -8.5271 3.8704 22 7 2.5368 -8.9081 3.4446 23 14 0.3503 -9.6512 4.9768 24 1 -0.5069 -10.5314 4.1428 25 1 1.2674 -10.4846 5.7953 26 1 -0.5050 -8.8312 5.8719 27 6 2.9141 -6.7651 2.1401 28 6 3.5471 -5.3792 1.8485 29 1 4.3055 -5.4491 1.0688 30 8 4.0908 -4.8055 3.0391 31 1 -0.3633 0.4511 0.9233 32 1 -0.3634 0.5739 -0.8525 33 1 -0.3633 -1.0253 -0.0709 34 1 3.0828 1.3432 0.0686 35 1 1.7023 1.8731 -0.9222 36 1 1.5915 1.9157 0.8538 37 1 1.5727 -1.0002 3.2368 38 1 0.1735 -0.5016 2.2561 39 1 -0.4674 1.8852 2.8493 40 1 0.8149 4.1122 3.3859 41 1 3.4292 3.5840 3.3482 42 1 3.1163 -2.8444 2.2903 43 1 0.9850 -4.4801 3.0690 44 1 0.2581 -5.2176 1.6158 45 1 2.8911 -9.7726 3.7056 46 1 3.5105 -7.3089 2.8726 47 1 2.8267 -7.3421 1.2195 48 1 4.8625 -5.2745 3.3847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219799955.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:26 Heat of formation + Delta-G solvation = 65.102469 kcal Electronic energy + Delta-G solvation = -30581.811663 eV Core-core repulsion = 26483.162257 eV Total energy + Delta-G solvation = -4098.649407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.76825 -40.04393 -38.29346 -36.95839 -34.74965 -34.09801 -33.20338 -31.76147 -30.57547 -29.62604 -28.40142 -27.77190 -26.93669 -25.40732 -24.47697 -22.58943 -21.37887 -21.09009 -20.61257 -20.00624 -19.64437 -17.78707 -17.40898 -17.03588 -16.80432 -16.42663 -15.69270 -15.16434 -14.86463 -14.78212 -14.50794 -14.37531 -14.06008 -14.04032 -13.93047 -13.39259 -13.17726 -13.02546 -12.93512 -12.78559 -12.55360 -12.15687 -12.02901 -11.80797 -11.73987 -11.68521 -11.35998 -11.09868 -10.88997 -10.88258 -10.63940 -10.38752 -10.06642 -9.86895 -9.81967 -9.66287 -9.25072 -8.97005 -8.75206 -8.69982 -8.33221 -6.87864 -5.72000 -3.11972 1.60535 2.10330 2.59288 2.71263 3.10767 3.37626 3.42746 3.44395 3.86248 4.11953 4.44584 4.47784 4.52432 4.59088 4.71981 4.86748 4.94940 5.05429 5.13277 5.21473 5.31407 5.32314 5.35540 5.44396 5.46768 5.47951 5.53034 5.69126 5.73040 5.76662 5.89726 5.93988 6.03249 6.25451 6.36651 6.49853 6.63771 6.66115 6.67936 6.81973 6.90812 7.23810 7.42788 7.53410 7.68686 7.76370 8.09953 8.29051 8.39791 9.15434 9.76514 10.39671 11.33086 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017982 B = 0.002702 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.738992 B =10361.999745 C =10625.224682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.516 5.516 3 C 0.018 3.982 4 C 0.059 3.941 5 H 0.117 0.883 6 C 0.102 3.898 7 N -0.365 5.365 8 C 0.053 3.947 9 C -0.273 4.273 10 C 0.044 3.956 11 N -0.288 5.288 12 C 0.520 3.480 13 O -0.522 6.522 14 N -0.705 5.705 15 C 0.143 3.857 16 H 0.101 0.899 17 C 0.133 3.867 18 N -0.596 5.596 19 C -0.217 4.217 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.926 5.926 23 Si 0.916 3.084 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.127 3.873 28 C 0.067 3.933 29 H 0.059 0.941 30 O -0.561 6.561 31 H 0.020 0.980 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.170 0.830 40 H 0.146 0.854 41 H 0.182 0.818 42 H 0.408 0.592 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.252 0.748 46 H 0.115 0.885 47 H 0.022 0.978 48 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.035 22.693 -2.884 22.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.239 5.239 3 C -0.130 4.130 4 C -0.055 4.055 5 H 0.134 0.866 6 C -0.021 4.021 7 N -0.148 5.148 8 C -0.093 4.093 9 C -0.303 4.303 10 C -0.142 4.142 11 N -0.110 5.110 12 C 0.304 3.696 13 O -0.397 6.397 14 N -0.357 5.357 15 C 0.038 3.962 16 H 0.119 0.881 17 C 0.006 3.994 18 N -0.322 5.322 19 C -0.346 4.346 20 H 0.096 0.904 21 C -0.207 4.207 22 N -0.575 5.575 23 Si 0.747 3.253 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.002 3.998 28 C 0.007 3.993 29 H 0.077 0.923 30 O -0.367 6.367 31 H 0.038 0.962 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.187 0.813 40 H 0.164 0.836 41 H 0.199 0.801 42 H 0.244 0.756 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.063 0.937 46 H 0.133 0.867 47 H 0.040 0.960 48 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.941 21.302 -4.157 21.724 hybrid contribution -0.698 0.213 1.804 1.946 sum 0.242 21.515 -2.353 21.645 Atomic orbital electron populations 1.22680 0.86707 1.04397 0.99713 1.61837 1.08785 1.13621 1.39640 1.22652 1.00646 0.88397 1.01295 1.21980 1.01973 0.92734 0.88789 0.86560 1.22392 1.02697 0.78137 0.98898 1.48685 1.04174 1.08146 1.53760 1.22526 0.96483 0.88899 1.01352 1.21490 0.93484 0.99369 1.15924 1.23893 0.97104 0.93535 0.99705 1.77383 1.01003 1.09735 1.22869 1.20043 0.80934 0.86844 0.81807 1.90671 1.35958 1.80575 1.32513 1.45863 1.44765 1.06214 1.38907 1.22167 0.95692 0.78188 1.00121 0.88070 1.21573 0.94479 0.88330 0.95058 1.44269 1.16894 1.14339 1.56724 1.19085 0.98796 0.96009 1.20665 0.90441 1.24762 0.97326 0.97641 1.00968 1.69719 1.17330 1.21188 1.49309 0.86038 0.78794 0.80494 0.79976 1.21604 1.21641 1.20711 1.22631 0.87800 0.90406 0.99000 1.23624 0.93465 0.96001 0.86255 0.92273 1.86228 1.50252 1.56758 1.43510 0.96174 0.91316 0.88762 0.91486 0.91659 0.94075 0.88357 0.87228 0.81262 0.83606 0.80075 0.75646 0.95477 0.95463 0.93695 0.86729 0.95978 0.77266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 8.48 60.07 0.51 0.65 16 2 N -0.52 -6.18 4.70 -244.59 -1.15 -7.33 16 3 C 0.02 0.19 8.62 60.06 0.52 0.71 16 4 C 0.06 0.69 2.38 -68.87 -0.16 0.53 16 5 H 0.12 1.38 7.71 -51.93 -0.40 0.98 16 6 C 0.10 1.05 5.32 -4.04 -0.02 1.03 16 7 N -0.37 -3.66 2.12 -61.37 -0.13 -3.79 16 8 C 0.05 0.45 9.29 -17.22 -0.16 0.29 16 9 C -0.27 -2.16 10.60 -40.01 -0.42 -2.59 16 10 C 0.04 0.38 11.75 -17.37 -0.20 0.18 16 11 N -0.29 -3.16 11.37 30.62 0.35 -2.81 16 12 C 0.52 7.67 7.01 -10.99 -0.08 7.59 16 13 O -0.52 -9.37 14.07 5.55 0.08 -9.29 16 14 N -0.71 -10.54 5.08 -52.03 -0.26 -10.80 16 15 C 0.14 2.58 3.15 -66.09 -0.21 2.37 16 16 H 0.10 1.89 7.62 -51.93 -0.40 1.49 16 17 C 0.13 2.86 7.00 -3.06 -0.02 2.84 16 18 N -0.60 -15.10 3.40 -169.94 -0.58 -15.67 16 19 C -0.22 -6.03 10.27 -15.06 -0.15 -6.18 16 20 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 22 N -0.93 -26.26 10.09 55.49 0.56 -25.70 16 23 Si 0.92 21.92 29.55 -169.99 -5.02 16.90 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.13 2.94 5.62 -2.42 -0.01 2.92 16 28 C 0.07 1.20 4.31 -24.46 -0.11 1.09 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 O -0.56 -9.33 12.23 -35.23 -0.43 -9.76 16 31 H 0.02 0.18 5.31 -51.93 -0.28 -0.09 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.24 6.05 -51.93 -0.31 0.93 16 34 H 0.07 0.73 7.90 -51.93 -0.41 0.32 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.04 0.42 3.80 -51.93 -0.20 0.22 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.11 1.05 5.93 -51.93 -0.31 0.74 16 39 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.18 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.41 5.61 7.58 -40.82 -0.31 5.30 16 43 H 0.03 0.59 8.03 -51.93 -0.42 0.18 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.12 2.93 5.88 -51.93 -0.31 2.62 16 47 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.38 5.10 9.12 45.56 0.42 5.52 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -32.97 377.32 -7.80 -40.77 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -6.27 Total: 10.79 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: -0.62 Total: 11.00 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: -1.21 Total: -66.10 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.35 Total: -19.05 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.97 -7.80 -40.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219799955.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.870 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds