Wall clock time and date at job start Tue Mar 31 2020 21:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99544 * 2 1 4 4 C 1.46893 * 110.99966 * 123.95598 * 2 1 3 5 5 H 1.09005 * 109.46956 * 193.89574 * 4 2 1 6 6 C 1.52998 * 109.47237 * 313.89669 * 4 2 1 7 7 N 1.46498 * 109.47049 * 295.00027 * 6 4 2 8 8 C 1.34951 * 126.03804 * 125.00074 * 7 6 4 9 9 C 1.35314 * 107.74954 * 179.77087 * 8 7 6 10 10 C 1.39870 * 107.91572 * 0.22998 * 9 8 7 11 11 N 1.30830 * 108.20567 * 359.97438 * 10 9 8 12 12 C 1.50697 * 109.47305 * 73.89680 * 4 2 1 13 13 O 1.21289 * 120.00122 * 343.32168 * 12 4 2 14 14 N 1.34776 * 120.00319 * 163.31367 * 12 4 2 15 15 C 1.46498 * 120.00386 * 179.97438 * 14 12 4 16 16 H 1.09005 * 110.63638 * 34.30762 * 15 14 12 17 17 C 1.54326 * 110.72276 * 271.16130 * 15 14 12 18 18 N 1.47022 * 107.26961 * 219.44337 * 17 15 14 19 19 C 1.36937 * 125.64292 * 178.97745 * 18 17 15 20 20 H 1.07997 * 120.00625 * 359.97438 * 19 18 17 21 21 C 1.38821 * 119.99587 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00040 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46886 * 89.99738 * 23 21 19 25 25 H 1.48504 * 109.46849 * 209.99887 * 23 21 19 26 26 H 1.48497 * 109.46965 * 329.99885 * 23 21 19 27 27 C 1.47417 * 108.70620 * 358.93918 * 18 17 15 28 28 C 1.55122 * 104.94497 * 24.00476 * 27 18 17 29 29 H 1.08998 * 111.16566 * 205.13408 * 28 27 18 30 30 O 1.42904 * 110.93652 * 81.21358 * 28 27 18 31 31 H 1.08995 * 109.47190 * 296.04163 * 1 2 3 32 32 H 1.09004 * 109.47396 * 56.05061 * 1 2 3 33 33 H 1.09005 * 109.46820 * 176.04299 * 1 2 3 34 34 H 1.09001 * 109.46910 * 176.17405 * 3 2 1 35 35 H 1.08997 * 109.47331 * 296.17697 * 3 2 1 36 36 H 1.09003 * 109.47334 * 56.17908 * 3 2 1 37 37 H 1.08999 * 109.47027 * 175.00359 * 6 4 2 38 38 H 1.08998 * 109.47108 * 55.00287 * 6 4 2 39 39 H 1.08000 * 126.12417 * 0.03111 * 8 7 6 40 40 H 1.07996 * 126.04037 * 180.24311 * 9 8 7 41 41 H 1.08003 * 125.89614 * 179.97438 * 10 9 8 42 42 H 0.97006 * 119.99996 * 0.02562 * 14 12 4 43 43 H 1.09001 * 109.88139 * 338.86065 * 17 15 14 44 44 H 1.08995 * 109.87804 * 99.87129 * 17 15 14 45 45 H 0.97000 * 119.99833 * 179.97438 * 22 21 19 46 46 H 1.08998 * 110.36840 * 142.96787 * 27 18 17 47 47 H 1.09003 * 110.36803 * 265.18073 * 27 18 17 48 48 H 0.96696 * 113.99735 * 67.96128 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 3.0570 -0.5510 1.2602 6 6 1.2445 -0.3700 2.4103 7 7 1.5237 1.0332 2.7255 8 6 0.6044 2.0040 2.9085 9 6 1.2658 3.1516 3.1852 10 6 2.6364 2.8737 3.1655 11 7 2.7923 1.6048 2.8876 12 6 1.8075 -2.2391 0.8812 13 8 1.0347 -2.6118 0.0239 14 7 2.4984 -3.1425 1.6045 15 6 2.3153 -4.5745 1.3557 16 1 2.1316 -4.7602 0.2975 17 6 1.1638 -5.1355 2.2166 18 7 1.5782 -6.4655 2.6867 19 6 0.8443 -7.2897 3.4973 20 1 -0.1288 -6.9772 3.8464 21 6 1.3511 -8.5271 3.8704 22 7 2.5368 -8.9081 3.4446 23 14 0.3503 -9.6512 4.9768 24 1 -0.5069 -10.5314 4.1428 25 1 1.2674 -10.4846 5.7953 26 1 -0.5050 -8.8312 5.8719 27 6 2.9141 -6.7651 2.1401 28 6 3.5471 -5.3792 1.8485 29 1 4.3055 -5.4491 1.0688 30 8 4.0908 -4.8055 3.0391 31 1 -0.3633 0.4511 0.9233 32 1 -0.3634 0.5739 -0.8525 33 1 -0.3633 -1.0253 -0.0709 34 1 3.0828 1.3432 0.0686 35 1 1.7023 1.8731 -0.9222 36 1 1.5915 1.9157 0.8538 37 1 1.5727 -1.0002 3.2368 38 1 0.1735 -0.5016 2.2561 39 1 -0.4674 1.8852 2.8493 40 1 0.8149 4.1122 3.3859 41 1 3.4292 3.5840 3.3482 42 1 3.1163 -2.8444 2.2903 43 1 0.9850 -4.4801 3.0690 44 1 0.2581 -5.2176 1.6158 45 1 2.8911 -9.7726 3.7056 46 1 3.5105 -7.3089 2.8726 47 1 2.8267 -7.3421 1.2195 48 1 4.8625 -5.2745 3.3847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219799955.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:25 Heat of formation + Delta-G solvation = 38.518997 kcal Electronic energy + Delta-G solvation = -30582.964409 eV Core-core repulsion = 26483.162257 eV Total energy + Delta-G solvation = -4099.802152 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.48175 -41.22079 -39.70814 -38.06669 -36.37348 -35.50727 -34.09044 -33.52670 -31.39198 -30.67540 -29.91390 -28.74754 -28.44727 -26.53799 -26.05378 -23.64544 -22.41081 -22.01511 -21.89403 -21.41924 -20.80029 -19.22943 -18.55312 -18.28523 -17.96609 -17.53735 -16.91800 -16.65644 -16.31425 -15.95320 -15.84094 -15.50791 -15.16960 -15.06640 -14.74085 -14.64817 -14.62793 -14.30901 -13.98008 -13.85425 -13.59817 -13.50872 -13.22034 -13.05961 -12.89106 -12.86363 -12.75148 -12.61248 -12.53794 -12.24296 -12.13755 -11.89727 -11.84611 -11.56111 -10.96072 -10.81896 -10.71680 -10.52201 -10.11537 -9.63317 -9.17699 -8.90448 -7.81086 -5.24253 0.94149 1.31291 1.46181 1.47512 1.56083 1.61547 1.95274 1.99552 2.48163 2.92853 3.17113 3.30198 3.33897 3.57558 3.64451 3.77501 3.85484 3.94575 3.99532 4.05482 4.13927 4.25084 4.28971 4.31562 4.45597 4.48451 4.58119 4.67666 4.72325 4.74672 4.85953 4.89780 4.94191 4.96119 5.07839 5.18098 5.33637 5.45043 5.48040 5.71364 5.75004 5.79732 5.95888 6.04442 6.25336 6.53912 6.77957 6.89449 7.08133 7.19701 7.73133 8.35697 9.20995 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017982 B = 0.002702 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.738992 B =10361.999745 C =10625.224682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.533 5.533 3 C 0.027 3.973 4 C 0.073 3.927 5 H 0.118 0.882 6 C 0.109 3.891 7 N -0.374 5.374 8 C 0.046 3.954 9 C -0.273 4.273 10 C 0.041 3.959 11 N -0.323 5.323 12 C 0.523 3.477 13 O -0.554 6.554 14 N -0.696 5.696 15 C 0.156 3.844 16 H 0.096 0.904 17 C 0.134 3.866 18 N -0.616 5.616 19 C -0.240 4.240 20 H 0.075 0.925 21 C -0.061 4.061 22 N -0.946 5.946 23 Si 0.980 3.020 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.272 1.272 27 C 0.127 3.873 28 C 0.089 3.911 29 H 0.092 0.908 30 O -0.563 6.563 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.193 0.807 40 H 0.168 0.832 41 H 0.205 0.795 42 H 0.416 0.584 43 H 0.025 0.975 44 H 0.013 0.987 45 H 0.249 0.751 46 H 0.090 0.910 47 H -0.001 1.001 48 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.056 24.870 -2.340 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.256 5.256 3 C -0.121 4.121 4 C -0.041 4.041 5 H 0.136 0.864 6 C -0.015 4.015 7 N -0.157 5.157 8 C -0.099 4.099 9 C -0.302 4.302 10 C -0.145 4.145 11 N -0.145 5.145 12 C 0.308 3.692 13 O -0.431 6.431 14 N -0.348 5.348 15 C 0.050 3.950 16 H 0.114 0.886 17 C 0.007 3.993 18 N -0.342 5.342 19 C -0.369 4.369 20 H 0.093 0.907 21 C -0.254 4.254 22 N -0.595 5.595 23 Si 0.808 3.192 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.197 1.197 27 C 0.002 3.998 28 C 0.029 3.971 29 H 0.110 0.890 30 O -0.371 6.371 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.112 0.888 38 H 0.134 0.866 39 H 0.209 0.791 40 H 0.185 0.815 41 H 0.221 0.779 42 H 0.254 0.746 43 H 0.043 0.957 44 H 0.031 0.969 45 H 0.059 0.941 46 H 0.108 0.892 47 H 0.017 0.983 48 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 0.984 23.526 -3.600 23.820 hybrid contribution -0.724 -0.399 1.634 1.831 sum 0.260 23.126 -1.966 23.211 Atomic orbital electron populations 1.22602 0.86218 1.03168 1.01104 1.61813 1.09433 1.14526 1.39873 1.22584 1.00142 0.87521 1.01843 1.21771 1.02294 0.90317 0.89698 0.86430 1.22232 1.02736 0.78826 0.97742 1.48615 1.04426 1.07992 1.54659 1.23023 0.97452 0.88630 1.00754 1.21810 0.93151 1.00138 1.15149 1.24403 0.98332 0.93253 0.98488 1.77356 1.01766 1.10901 1.24443 1.20564 0.79824 0.87998 0.80815 1.90667 1.37239 1.81339 1.33884 1.45711 1.44998 1.04869 1.39255 1.21811 0.94318 0.79924 0.98982 0.88566 1.21622 0.95458 0.87039 0.95160 1.44535 1.17768 1.15335 1.56571 1.19390 0.99228 0.96946 1.21314 0.90724 1.25552 0.98488 0.98922 1.02411 1.69947 1.18372 1.21179 1.50021 0.85063 0.77435 0.78485 0.78226 1.21506 1.21561 1.19748 1.22518 0.87083 0.93239 0.97004 1.23319 0.93831 0.92491 0.87479 0.89024 1.86199 1.51137 1.56592 1.43161 0.94324 0.90383 0.91202 0.92128 0.90943 0.93569 0.88772 0.86555 0.79055 0.81477 0.77852 0.74642 0.95701 0.96908 0.94105 0.89224 0.98278 0.75415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.48 127.69 1.08 1.42 16 2 N -0.53 -12.09 4.70 -927.74 -4.36 -16.45 16 3 C 0.03 0.51 8.62 127.69 1.10 1.61 16 4 C 0.07 1.63 2.38 44.17 0.11 1.74 16 5 H 0.12 2.65 7.71 -2.38 -0.02 2.63 16 6 C 0.11 2.10 5.32 86.38 0.46 2.56 16 7 N -0.37 -6.80 2.12 -348.07 -0.74 -7.54 16 8 C 0.05 0.66 9.29 83.54 0.78 1.43 16 9 C -0.27 -3.56 10.60 21.99 0.23 -3.33 16 10 C 0.04 0.63 11.75 85.24 1.00 1.63 16 11 N -0.32 -6.52 11.37 -57.02 -0.65 -7.17 16 12 C 0.52 15.11 7.01 87.66 0.61 15.72 16 13 O -0.55 -19.91 14.07 -3.06 -0.04 -19.96 16 14 N -0.70 -20.16 5.08 -436.90 -2.22 -22.38 16 15 C 0.16 5.56 3.15 46.18 0.15 5.70 16 16 H 0.10 3.58 7.62 -2.38 -0.02 3.56 16 17 C 0.13 5.86 7.00 86.73 0.61 6.47 16 18 N -0.62 -31.84 3.40 -691.57 -2.35 -34.19 16 19 C -0.24 -13.56 10.27 84.04 0.86 -12.70 16 20 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 21 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 22 N -0.95 -54.56 10.09 21.65 0.22 -54.35 16 23 Si 0.98 45.40 29.55 68.60 2.03 47.42 16 24 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 25 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 C 0.13 5.97 5.62 86.93 0.49 6.46 16 28 C 0.09 3.10 4.31 32.06 0.14 3.24 16 29 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 30 O -0.56 -17.78 12.23 -148.98 -1.82 -19.60 16 31 H 0.04 0.64 5.31 -2.39 -0.01 0.62 16 32 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.07 1.82 6.05 -2.38 -0.01 1.80 16 34 H 0.06 1.23 7.90 -2.39 -0.02 1.21 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.05 0.84 3.80 -2.39 -0.01 0.83 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.12 2.05 5.93 -2.39 -0.01 2.04 16 39 H 0.19 1.67 8.06 -2.91 -0.02 1.65 16 40 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 41 H 0.20 1.89 8.06 -2.91 -0.02 1.86 16 42 H 0.42 10.83 7.58 -92.70 -0.70 10.13 16 43 H 0.02 1.10 8.03 -2.39 -0.02 1.08 16 44 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 46 H 0.09 4.68 5.88 -2.39 -0.01 4.67 16 47 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 48 H 0.40 9.92 9.12 -74.06 -0.68 9.24 16 Total: -1.00 -71.83 377.32 -2.23 -74.06 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: -0.38 Total: 31.15 kcal Atomic # 6 Polarization: 20.91 SS G_CDS: 8.08 Total: 29.00 kcal Atomic # 7 Polarization: -131.97 SS G_CDS: -10.10 Total: -142.07 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -1.87 Total: -39.56 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -71.83 -2.23 -74.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219799955.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.583 kcal (2) G-P(sol) polarization free energy of solvation -71.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds