Wall clock time and date at job start Tue Mar 31 2020 21:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37355 * 125.83376 * 2 1 4 4 N 1.29401 * 108.83068 * 179.77379 * 3 2 1 5 5 N 1.40166 * 108.13951 * 0.39131 * 4 3 2 6 6 C 1.46495 * 126.35065 * 179.87507 * 5 4 3 7 7 C 1.53006 * 109.47340 * 269.68514 * 6 5 4 8 8 C 1.50699 * 109.47302 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99925 * 359.72406 * 8 7 6 10 10 N 1.34768 * 119.99838 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99805 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.46842 * 180.02562 * 11 10 8 13 13 C 1.53034 * 109.45943 * 295.02315 * 12 11 10 14 14 C 1.53195 * 109.31513 * 178.60193 * 13 12 11 15 15 N 1.46927 * 108.75989 * 54.65825 * 14 13 12 16 16 C 1.36932 * 120.62995 * 126.40958 * 15 14 13 17 17 H 1.08000 * 120.00109 * 331.82242 * 16 15 14 18 18 C 1.38815 * 120.00238 * 151.82200 * 16 15 14 19 19 N 1.31614 * 120.00009 * 343.07620 * 18 16 15 20 20 Si 1.86798 * 120.00069 * 163.07267 * 18 16 15 21 21 H 1.48497 * 109.47512 * 90.00158 * 20 18 16 22 22 H 1.48501 * 109.47238 * 210.00379 * 20 18 16 23 23 H 1.48503 * 109.47428 * 330.00044 * 20 18 16 24 24 C 1.46928 * 118.74135 * 306.38462 * 15 14 13 25 25 C 1.53045 * 109.45706 * 174.97604 * 12 11 10 26 26 C 1.34813 * 125.83165 * 180.02562 * 2 1 3 27 27 O 1.21820 * 126.30300 * 359.96866 * 26 2 1 28 28 H 1.09004 * 109.47301 * 269.97074 * 1 2 3 29 29 H 1.09000 * 109.47430 * 29.97047 * 1 2 3 30 30 H 1.09003 * 109.47649 * 149.96840 * 1 2 3 31 31 H 1.08005 * 125.58430 * 0.02673 * 3 2 1 32 32 H 1.09010 * 109.47439 * 149.68864 * 6 5 4 33 33 H 1.09000 * 109.47559 * 29.68628 * 6 5 4 34 34 H 1.09000 * 109.46620 * 59.99627 * 7 6 5 35 35 H 1.08995 * 109.47070 * 300.00088 * 7 6 5 36 36 H 0.97000 * 120.00254 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.47189 * 299.99804 * 11 10 8 38 38 H 1.08997 * 109.47074 * 60.00114 * 11 10 8 39 39 H 1.08996 * 109.46169 * 55.00137 * 12 11 10 40 40 H 1.08998 * 109.50396 * 298.57219 * 13 12 11 41 41 H 1.09001 * 109.49681 * 58.66556 * 13 12 11 42 42 H 1.09000 * 109.59998 * 294.87687 * 14 13 12 43 43 H 1.08991 * 109.70514 * 174.50723 * 14 13 12 44 44 H 0.96998 * 120.00328 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.58398 * 293.82513 * 24 15 14 46 46 H 1.08996 * 109.70398 * 173.47122 * 24 15 14 47 47 H 1.09002 * 109.49248 * 301.33405 * 25 12 11 48 48 H 1.08991 * 109.49998 * 61.43008 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7352 0.0048 5 7 3.5344 -0.6662 -0.0009 6 6 4.7313 -1.5109 -0.0008 7 6 5.1478 -1.8055 -1.4434 8 6 6.3787 -2.6750 -1.4433 9 8 6.8769 -3.0205 -0.3929 10 7 6.9292 -3.0635 -2.6104 11 6 8.1262 -3.9084 -2.6103 12 6 8.5433 -4.2019 -4.0528 13 6 7.4582 -5.0360 -4.7375 14 6 7.8629 -5.2984 -6.1916 15 7 9.1968 -5.9142 -6.2071 16 6 9.4130 -7.0938 -6.8682 17 1 8.6063 -7.8020 -6.9870 18 6 10.6690 -7.3793 -7.3856 19 7 11.5504 -6.4148 -7.5439 20 14 11.1084 -9.1326 -7.8572 21 1 10.7432 -9.3698 -9.2769 22 1 12.5678 -9.3420 -7.6798 23 1 10.3635 -10.0801 -6.9896 24 6 10.2944 -5.2402 -5.5003 25 6 9.8622 -4.9782 -4.0542 26 6 2.2542 -1.0930 -0.0005 27 8 1.8805 -2.2524 -0.0005 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5143 31 1 1.9249 2.1373 0.0004 32 1 4.5150 -2.4475 0.5133 33 1 5.5414 -0.9932 0.5127 34 1 5.3640 -0.8690 -1.9575 35 1 4.3377 -2.3232 -1.9569 36 1 6.5331 -2.7839 -3.4504 37 1 8.9361 -3.3908 -2.0964 38 1 7.9097 -4.8450 -2.0965 39 1 8.6737 -3.2633 -4.5913 40 1 7.3446 -5.9855 -4.2143 41 1 6.5135 -4.4928 -4.7154 42 1 7.8889 -4.3565 -6.7395 43 1 7.1439 -5.9723 -6.6573 44 1 12.4282 -6.6143 -7.9051 45 1 10.5186 -4.2935 -5.9919 46 1 11.1807 -5.8746 -5.5077 47 1 10.6289 -4.3936 -3.5456 48 1 9.7259 -5.9281 -3.5375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223929092.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:06 Heat of formation + Delta-G solvation = 23.104019 kcal Electronic energy + Delta-G solvation = -28573.271873 eV Core-core repulsion = 24472.801277 eV Total energy + Delta-G solvation = -4100.470596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.78835 -39.88033 -37.87771 -37.59201 -36.06630 -34.97499 -33.20785 -32.80924 -30.91451 -30.22379 -29.67402 -27.98462 -26.90199 -25.05659 -23.79116 -22.72157 -22.21128 -21.49123 -21.01779 -20.39930 -19.10262 -18.14396 -17.32421 -16.96601 -16.66633 -16.45095 -16.01084 -15.83339 -15.60692 -14.98339 -14.77687 -14.33196 -14.22172 -13.85238 -13.58163 -13.49871 -13.30861 -13.26132 -13.07963 -13.03411 -12.65196 -12.34069 -12.32560 -12.26601 -11.88277 -11.56424 -11.33434 -10.99214 -10.70465 -10.61170 -10.54523 -10.50840 -10.25856 -10.22384 -10.04934 -9.86805 -9.55230 -9.43896 -9.02114 -8.94882 -8.46382 -6.66275 -5.78651 -3.20858 1.35164 1.53477 2.30134 2.54810 2.67367 3.22479 3.37780 3.44992 3.47734 4.01060 4.28777 4.45805 4.50317 4.52228 4.69902 4.72489 4.82724 4.99228 5.09333 5.15338 5.23003 5.30206 5.37664 5.41785 5.44527 5.54696 5.60491 5.81049 5.86612 5.93399 6.04383 6.12074 6.14244 6.32088 6.40950 6.46073 6.60093 6.68760 6.76392 6.81390 6.97910 7.21803 7.36455 7.45612 7.66116 7.67254 7.80079 8.13727 8.45840 9.22086 9.85623 10.42333 11.29921 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027735 B = 0.001736 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.294703 B =16123.893186 C =16518.816285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.563 5.563 3 C 0.252 3.748 4 N -0.280 5.280 5 N -0.451 5.451 6 C 0.178 3.822 7 C -0.161 4.161 8 C 0.519 3.481 9 O -0.545 6.545 10 N -0.722 5.722 11 C 0.123 3.877 12 C -0.090 4.090 13 C -0.127 4.127 14 C 0.145 3.855 15 N -0.592 5.592 16 C -0.252 4.252 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.172 3.828 25 C -0.133 4.133 26 C 0.641 3.359 27 O -0.550 6.550 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.231 0.769 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.401 0.599 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.053 0.947 44 H 0.253 0.747 45 H 0.017 0.983 46 H 0.088 0.912 47 H 0.051 0.949 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.306 18.959 14.691 31.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.293 5.293 3 C -0.047 4.047 4 N -0.101 5.101 5 N -0.272 5.272 6 C 0.057 3.943 7 C -0.202 4.202 8 C 0.304 3.696 9 O -0.423 6.423 10 N -0.373 5.373 11 C -0.001 4.001 12 C -0.109 4.109 13 C -0.167 4.167 14 C 0.019 3.981 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.046 3.954 25 C -0.173 4.173 26 C 0.341 3.659 27 O -0.423 6.423 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.247 0.753 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.236 0.764 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.035 0.965 46 H 0.106 0.894 47 H 0.070 0.930 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.001 18.074 15.373 30.398 hybrid contribution -0.714 -0.781 -0.804 1.329 sum -19.715 17.293 14.569 29.999 Atomic orbital electron populations 1.21834 0.74127 1.04823 1.03597 1.45965 1.08964 1.06712 1.67627 1.25958 0.85848 0.94781 0.98128 1.77028 1.18163 0.92056 1.22815 1.49043 1.06246 1.03084 1.68823 1.21191 0.83289 0.93696 0.96173 1.22041 0.97386 1.01419 0.99340 1.20223 0.84828 0.80515 0.84064 1.90724 1.63527 1.56869 1.31185 1.46089 1.30390 1.52514 1.08326 1.21612 0.85978 0.94137 0.98324 1.21314 0.97303 0.99391 0.92887 1.22077 0.96001 0.99258 0.99333 1.20887 0.88811 0.96041 0.92387 1.44045 1.04194 1.24424 1.58841 1.19168 0.96498 0.93360 1.29134 0.91799 1.25040 0.98392 0.97514 0.98735 1.70024 1.06732 1.30099 1.47921 0.86316 0.77452 0.84814 0.78308 1.21427 1.21546 1.20497 1.20757 0.92335 0.96268 0.86049 1.22180 0.94495 0.98895 1.01702 1.16832 0.82179 0.85155 0.81762 1.91119 1.77666 1.15169 1.58387 0.90844 0.89254 0.89330 0.75294 0.87748 0.87715 0.88041 0.88341 0.76406 0.91679 0.91511 0.91312 0.92139 0.93520 0.96649 0.92892 0.93649 0.96468 0.89408 0.93048 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.28 11.05 59.85 0.66 0.94 16 2 N -0.56 -3.74 3.14 -130.10 -0.41 -4.15 16 3 C 0.25 1.18 12.66 -89.12 -1.13 0.05 16 4 N -0.28 -2.32 12.53 29.87 0.37 -1.94 16 5 N -0.45 -4.63 3.63 -65.12 -0.24 -4.87 16 6 C 0.18 1.83 5.68 -4.04 -0.02 1.81 16 7 C -0.16 -1.52 6.02 -27.88 -0.17 -1.69 16 8 C 0.52 6.45 7.83 -10.99 -0.09 6.36 16 9 O -0.55 -8.71 15.98 5.56 0.09 -8.62 16 10 N -0.72 -8.57 5.27 -60.29 -0.32 -8.89 16 11 C 0.12 1.72 5.06 -4.04 -0.02 1.70 16 12 C -0.09 -1.40 2.19 -90.58 -0.20 -1.60 16 13 C -0.13 -2.09 5.25 -26.61 -0.14 -2.23 16 14 C 0.15 2.96 6.52 -3.71 -0.02 2.94 16 15 N -0.59 -14.68 2.99 -172.32 -0.52 -15.19 16 16 C -0.25 -6.91 9.58 -15.06 -0.14 -7.06 16 17 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 18 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 19 N -0.90 -26.16 11.19 55.49 0.62 -25.54 16 20 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 25 C -0.13 -2.46 5.36 -26.61 -0.14 -2.60 16 26 C 0.64 7.16 8.60 -86.73 -0.75 6.42 16 27 O -0.55 -8.15 17.71 5.08 0.09 -8.06 16 28 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.09 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.23 -0.20 8.06 -52.48 -0.42 -0.63 16 32 H 0.10 1.20 8.07 -51.92 -0.42 0.78 16 33 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.40 3.93 7.65 -40.82 -0.31 3.61 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 0.63 7.15 -51.93 -0.37 0.26 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 2.32 6.07 -51.93 -0.31 2.01 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 394.36 15.07 5.94 5.94 Total: -1.00 -36.69 394.36 -9.37 -46.06 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -7.71 Total: -0.46 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -2.26 Total: 9.00 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.48 Total: -60.58 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.18 Total: -16.68 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.69 -9.37 -46.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223929092.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.164 kcal (2) G-P(sol) polarization free energy of solvation -36.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds