Wall clock time and date at job start Tue Mar 31 2020 21:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37355 * 125.83376 * 2 1 4 4 N 1.29401 * 108.83068 * 179.77379 * 3 2 1 5 5 N 1.40166 * 108.13951 * 0.39131 * 4 3 2 6 6 C 1.46495 * 126.35065 * 179.87507 * 5 4 3 7 7 C 1.53006 * 109.47340 * 269.68514 * 6 5 4 8 8 C 1.50699 * 109.47302 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99925 * 359.72406 * 8 7 6 10 10 N 1.34768 * 119.99838 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99805 * 179.97438 * 10 8 7 12 12 C 1.53007 * 109.46842 * 180.02562 * 11 10 8 13 13 C 1.53034 * 109.45943 * 295.02315 * 12 11 10 14 14 C 1.53195 * 109.31513 * 178.60193 * 13 12 11 15 15 N 1.46927 * 108.75989 * 54.65825 * 14 13 12 16 16 C 1.36932 * 120.62995 * 126.40958 * 15 14 13 17 17 H 1.08000 * 120.00109 * 331.82242 * 16 15 14 18 18 C 1.38815 * 120.00238 * 151.82200 * 16 15 14 19 19 N 1.31614 * 120.00009 * 343.07620 * 18 16 15 20 20 Si 1.86798 * 120.00069 * 163.07267 * 18 16 15 21 21 H 1.48497 * 109.47512 * 90.00158 * 20 18 16 22 22 H 1.48501 * 109.47238 * 210.00379 * 20 18 16 23 23 H 1.48503 * 109.47428 * 330.00044 * 20 18 16 24 24 C 1.46928 * 118.74135 * 306.38462 * 15 14 13 25 25 C 1.53045 * 109.45706 * 174.97604 * 12 11 10 26 26 C 1.34813 * 125.83165 * 180.02562 * 2 1 3 27 27 O 1.21820 * 126.30300 * 359.96866 * 26 2 1 28 28 H 1.09004 * 109.47301 * 269.97074 * 1 2 3 29 29 H 1.09000 * 109.47430 * 29.97047 * 1 2 3 30 30 H 1.09003 * 109.47649 * 149.96840 * 1 2 3 31 31 H 1.08005 * 125.58430 * 0.02673 * 3 2 1 32 32 H 1.09010 * 109.47439 * 149.68864 * 6 5 4 33 33 H 1.09000 * 109.47559 * 29.68628 * 6 5 4 34 34 H 1.09000 * 109.46620 * 59.99627 * 7 6 5 35 35 H 1.08995 * 109.47070 * 300.00088 * 7 6 5 36 36 H 0.97000 * 120.00254 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.47189 * 299.99804 * 11 10 8 38 38 H 1.08997 * 109.47074 * 60.00114 * 11 10 8 39 39 H 1.08996 * 109.46169 * 55.00137 * 12 11 10 40 40 H 1.08998 * 109.50396 * 298.57219 * 13 12 11 41 41 H 1.09001 * 109.49681 * 58.66556 * 13 12 11 42 42 H 1.09000 * 109.59998 * 294.87687 * 14 13 12 43 43 H 1.08991 * 109.70514 * 174.50723 * 14 13 12 44 44 H 0.96998 * 120.00328 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.58398 * 293.82513 * 24 15 14 46 46 H 1.08996 * 109.70398 * 173.47122 * 24 15 14 47 47 H 1.09002 * 109.49248 * 301.33405 * 25 12 11 48 48 H 1.08991 * 109.49998 * 61.43008 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7352 0.0048 5 7 3.5344 -0.6662 -0.0009 6 6 4.7313 -1.5109 -0.0008 7 6 5.1478 -1.8055 -1.4434 8 6 6.3787 -2.6750 -1.4433 9 8 6.8769 -3.0205 -0.3929 10 7 6.9292 -3.0635 -2.6104 11 6 8.1262 -3.9084 -2.6103 12 6 8.5433 -4.2019 -4.0528 13 6 7.4582 -5.0360 -4.7375 14 6 7.8629 -5.2984 -6.1916 15 7 9.1968 -5.9142 -6.2071 16 6 9.4130 -7.0938 -6.8682 17 1 8.6063 -7.8020 -6.9870 18 6 10.6690 -7.3793 -7.3856 19 7 11.5504 -6.4148 -7.5439 20 14 11.1084 -9.1326 -7.8572 21 1 10.7432 -9.3698 -9.2769 22 1 12.5678 -9.3420 -7.6798 23 1 10.3635 -10.0801 -6.9896 24 6 10.2944 -5.2402 -5.5003 25 6 9.8622 -4.9782 -4.0542 26 6 2.2542 -1.0930 -0.0005 27 8 1.8805 -2.2524 -0.0005 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5143 31 1 1.9249 2.1373 0.0004 32 1 4.5150 -2.4475 0.5133 33 1 5.5414 -0.9932 0.5127 34 1 5.3640 -0.8690 -1.9575 35 1 4.3377 -2.3232 -1.9569 36 1 6.5331 -2.7839 -3.4504 37 1 8.9361 -3.3908 -2.0964 38 1 7.9097 -4.8450 -2.0965 39 1 8.6737 -3.2633 -4.5913 40 1 7.3446 -5.9855 -4.2143 41 1 6.5135 -4.4928 -4.7154 42 1 7.8889 -4.3565 -6.7395 43 1 7.1439 -5.9723 -6.6573 44 1 12.4282 -6.6143 -7.9051 45 1 10.5186 -4.2935 -5.9919 46 1 11.1807 -5.8746 -5.5077 47 1 10.6289 -4.3936 -3.5456 48 1 9.7259 -5.9281 -3.5375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223929092.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:04 Heat of formation + Delta-G solvation = -1.428884 kcal Electronic energy + Delta-G solvation = -28574.335700 eV Core-core repulsion = 24472.801277 eV Total energy + Delta-G solvation = -4101.534423 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.39375 -40.94415 -39.38578 -38.41418 -36.78260 -36.33793 -34.51787 -33.79353 -32.55796 -31.46277 -30.92675 -28.71718 -28.07514 -26.21906 -25.15170 -23.84252 -23.30043 -22.61676 -22.11988 -21.43910 -20.65006 -18.90839 -18.63846 -17.99510 -17.64352 -17.16561 -17.02193 -16.75162 -16.69317 -16.45217 -15.78734 -15.49822 -15.33850 -15.28432 -14.84153 -14.81578 -14.42251 -14.27623 -14.03952 -13.88849 -13.79799 -13.48818 -13.38518 -13.21090 -13.00171 -12.87126 -12.81989 -12.56300 -12.37908 -12.27463 -12.02463 -11.85112 -11.62900 -11.38370 -11.30898 -11.13471 -11.11119 -10.86227 -10.53394 -10.09950 -9.65531 -8.66755 -7.87829 -5.32508 0.73388 1.10189 1.44932 1.47023 1.55521 1.56397 1.56608 2.10424 2.37459 2.50782 3.26748 3.46228 3.62806 3.70875 3.81493 3.88376 3.95552 3.99818 4.08789 4.13632 4.29575 4.35452 4.51628 4.53634 4.54492 4.65971 4.69570 4.70882 4.73676 4.82547 4.83451 4.93567 4.96736 5.01378 5.11158 5.13458 5.28322 5.29645 5.37173 5.45026 5.55113 5.65745 5.70695 5.79076 6.39724 6.49807 6.64343 6.94440 7.15664 7.17934 7.87999 8.38557 9.18280 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027735 B = 0.001736 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.294703 B =16123.893186 C =16518.816285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.559 5.559 3 C 0.280 3.720 4 N -0.315 5.315 5 N -0.457 5.457 6 C 0.179 3.821 7 C -0.143 4.143 8 C 0.520 3.480 9 O -0.583 6.583 10 N -0.713 5.713 11 C 0.135 3.865 12 C -0.078 4.078 13 C -0.115 4.115 14 C 0.140 3.860 15 N -0.612 5.612 16 C -0.263 4.263 17 H 0.063 0.937 18 C -0.051 4.051 19 N -0.934 5.934 20 Si 0.964 3.036 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.273 1.273 24 C 0.177 3.823 25 C -0.123 4.123 26 C 0.623 3.377 27 O -0.601 6.601 28 H 0.083 0.917 29 H 0.133 0.867 30 H 0.070 0.930 31 H 0.289 0.711 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.415 0.585 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.048 0.952 41 H 0.084 0.916 42 H 0.019 0.981 43 H 0.050 0.950 44 H 0.250 0.750 45 H 0.000 1.000 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.543 21.352 15.151 34.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.286 5.286 3 C -0.018 4.018 4 N -0.136 5.136 5 N -0.277 5.277 6 C 0.057 3.943 7 C -0.184 4.184 8 C 0.307 3.693 9 O -0.463 6.463 10 N -0.365 5.365 11 C 0.012 3.988 12 C -0.097 4.097 13 C -0.154 4.154 14 C 0.014 3.986 15 N -0.336 5.336 16 C -0.393 4.393 17 H 0.081 0.919 18 C -0.246 4.246 19 N -0.580 5.580 20 Si 0.792 3.208 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.198 1.198 24 C 0.051 3.949 25 C -0.162 4.162 26 C 0.322 3.678 27 O -0.478 6.478 28 H 0.102 0.898 29 H 0.151 0.849 30 H 0.089 0.911 31 H 0.304 0.696 32 H 0.101 0.899 33 H 0.123 0.877 34 H 0.142 0.858 35 H 0.121 0.879 36 H 0.252 0.748 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.037 0.963 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.018 0.982 46 H 0.069 0.931 47 H 0.089 0.911 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.297 20.525 15.822 33.544 hybrid contribution -0.121 -1.414 -0.946 1.705 sum -21.418 19.111 14.877 32.331 Atomic orbital electron populations 1.22169 0.71880 1.06118 1.04754 1.46183 1.10198 1.05988 1.66226 1.27158 0.84399 0.96097 0.94099 1.77064 1.20305 0.90378 1.25860 1.49018 1.05760 1.04214 1.68688 1.21032 0.83604 0.93120 0.96552 1.21907 0.95788 1.01673 0.99048 1.20652 0.85151 0.80112 0.83398 1.90714 1.64749 1.58291 1.32570 1.45947 1.29667 1.51912 1.08984 1.21290 0.86887 0.94063 0.96605 1.21146 0.95353 0.99074 0.94078 1.21933 0.97832 0.99436 0.96200 1.21071 0.86675 0.95696 0.95122 1.44328 1.05950 1.24290 1.59027 1.19481 0.96613 0.94546 1.28668 0.91920 1.25769 0.98474 1.00959 0.99431 1.70168 1.06817 1.31793 1.49211 0.85327 0.76791 0.80628 0.78004 1.21049 1.21814 1.19823 1.20567 0.91191 0.94319 0.88775 1.21983 0.96807 0.99387 0.98049 1.17174 0.82964 0.85533 0.82106 1.91062 1.78563 1.17413 1.60772 0.89802 0.84888 0.91099 0.69571 0.89892 0.87699 0.85844 0.87906 0.74824 0.91617 0.92701 0.90277 0.93311 0.89793 0.96300 0.93169 0.94117 0.98232 0.93092 0.91145 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.28 11.05 127.77 1.41 1.69 16 2 N -0.56 -6.12 3.14 -683.67 -2.15 -8.26 16 3 C 0.28 1.57 12.66 179.82 2.28 3.85 16 4 N -0.31 -4.49 12.53 -59.42 -0.74 -5.24 16 5 N -0.46 -9.04 3.63 -478.00 -1.73 -10.77 16 6 C 0.18 3.67 5.68 86.38 0.49 4.16 16 7 C -0.14 -2.52 6.02 29.85 0.18 -2.34 16 8 C 0.52 12.25 7.83 87.66 0.69 12.93 16 9 O -0.58 -18.43 15.98 -3.03 -0.05 -18.48 16 10 N -0.71 -15.28 5.27 -463.06 -2.44 -17.72 16 11 C 0.14 3.55 5.06 86.38 0.44 3.99 16 12 C -0.08 -2.28 2.19 -10.76 -0.02 -2.31 16 13 C -0.12 -3.56 5.25 30.67 0.16 -3.40 16 14 C 0.14 5.58 6.52 86.36 0.56 6.15 16 15 N -0.61 -30.68 2.99 -699.11 -2.09 -32.77 16 16 C -0.26 -14.62 9.58 84.03 0.81 -13.82 16 17 H 0.06 3.42 7.88 -2.91 -0.02 3.40 16 18 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 19 N -0.93 -55.58 11.19 21.65 0.24 -55.33 16 20 Si 0.96 45.47 29.59 68.60 2.03 47.50 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 24 C 0.18 8.48 5.30 86.36 0.46 8.93 16 25 C -0.12 -4.48 5.36 30.67 0.16 -4.31 16 26 C 0.62 13.65 8.60 178.99 1.54 15.19 16 27 O -0.60 -18.36 17.71 -4.73 -0.08 -18.45 16 28 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.13 -0.75 8.14 -2.39 -0.02 -0.76 16 30 H 0.07 0.52 8.08 -2.39 -0.02 0.50 16 31 H 0.29 -2.26 8.06 -2.91 -0.02 -2.28 16 32 H 0.08 2.02 8.07 -2.38 -0.02 2.01 16 33 H 0.10 2.09 8.10 -2.39 -0.02 2.07 16 34 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.41 6.74 7.65 -92.71 -0.71 6.03 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.08 2.00 7.15 -2.39 -0.02 1.98 16 42 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 44 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 45 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 46 H 0.05 2.80 6.07 -2.39 -0.01 2.78 16 47 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -84.48 394.36 2.80 -81.68 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.25 Total: 9.58 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 9.57 Total: 28.26 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -8.92 Total: -130.10 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -0.13 Total: -36.93 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -84.48 2.80 -81.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223929092.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.254 kcal (2) G-P(sol) polarization free energy of solvation -84.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds