Wall clock time and date at job start Tue Mar 31 2020 20:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45195 * 109.47329 * 2 1 4 4 C 1.34680 * 117.00189 * 179.97438 * 3 2 1 5 5 O 1.21430 * 120.00236 * 0.02562 * 4 3 2 6 6 C 1.48073 * 120.00029 * 180.02562 * 4 3 2 7 7 C 1.39346 * 119.72383 * 180.02562 * 6 4 3 8 8 C 1.38597 * 119.05267 * 179.97438 * 7 6 4 9 9 C 1.50693 * 120.75254 * 180.02562 * 8 7 6 10 10 O 1.42904 * 109.47253 * 90.00406 * 9 8 7 11 11 C 1.42894 * 114.00427 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.46988 * 30.00822 * 11 10 9 13 13 C 1.50701 * 109.47685 * 270.00292 * 11 10 9 14 14 H 1.07997 * 119.99732 * 124.89688 * 13 11 10 15 15 C 1.37876 * 119.99558 * 305.17841 * 13 11 10 16 16 N 1.31522 * 119.99687 * 192.14710 * 15 13 11 17 17 Si 1.86791 * 120.00460 * 12.14708 * 15 13 11 18 18 H 1.48504 * 109.46944 * 85.17950 * 17 15 13 19 19 H 1.48498 * 109.47150 * 205.17667 * 17 15 13 20 20 H 1.48498 * 109.47131 * 325.17972 * 17 15 13 21 21 C 1.53003 * 109.46909 * 150.00184 * 11 10 9 22 22 N 1.46909 * 109.46896 * 191.05651 * 21 11 10 23 23 C 1.46900 * 109.47018 * 54.22769 * 22 21 11 24 24 C 1.46898 * 109.46776 * 174.22599 * 22 21 11 25 25 C 1.46897 * 109.47044 * 294.22620 * 22 21 11 26 26 C 1.38620 * 118.49113 * 0.27993 * 8 7 6 27 27 C 1.38591 * 119.35526 * 359.43270 * 26 8 7 28 28 N 1.31507 * 120.90812 * 0.57547 * 27 26 8 29 29 H 1.09000 * 109.46758 * 299.99481 * 1 2 3 30 30 H 1.08996 * 109.46742 * 59.99738 * 1 2 3 31 31 H 1.09007 * 109.46908 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47252 * 239.99912 * 2 1 3 33 33 H 1.09001 * 109.47426 * 120.00444 * 2 1 3 34 34 H 1.08004 * 120.47507 * 359.97438 * 7 6 4 35 35 H 1.09001 * 109.47871 * 330.00579 * 9 8 7 36 36 H 1.09003 * 109.47567 * 210.00487 * 9 8 7 37 37 H 0.96989 * 120.00216 * 180.02562 * 16 15 13 38 38 H 1.08995 * 109.47195 * 311.05649 * 21 11 10 39 39 H 1.09005 * 109.47252 * 71.06008 * 21 11 10 40 40 H 1.08994 * 109.47336 * 52.64269 * 23 22 21 41 41 H 1.08994 * 109.47119 * 172.64391 * 23 22 21 42 42 H 1.09005 * 109.46885 * 292.63740 * 23 22 21 43 43 H 1.09003 * 109.47606 * 59.99906 * 24 22 21 44 44 H 1.09003 * 109.47151 * 180.02562 * 24 22 21 45 45 H 1.09001 * 109.47192 * 299.99532 * 24 22 21 46 46 H 1.08996 * 109.47288 * 73.28036 * 25 22 21 47 47 H 1.08998 * 109.46681 * 193.28403 * 25 22 21 48 48 H 1.09005 * 109.46792 * 313.27950 * 25 22 21 49 49 H 1.07996 * 120.32203 * 179.71794 * 26 8 7 50 50 H 1.07999 * 119.54449 * 180.32500 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3492 1.5454 0.0005 5 8 4.0890 0.5824 0.0005 6 6 3.9152 2.9136 0.0011 7 6 5.2975 3.0896 0.0012 8 6 5.8122 4.3764 0.0012 9 6 7.3008 4.6109 0.0006 10 8 7.7708 4.6854 -1.3469 11 6 9.1778 4.9076 -1.4603 12 1 9.6855 4.4673 -0.6021 13 6 9.4509 6.3892 -1.4999 14 1 10.1334 6.8315 -0.7894 15 6 8.8248 7.1806 -2.4394 16 7 9.2323 8.4156 -2.6355 17 14 7.3979 6.4990 -3.4336 18 1 6.1368 6.6647 -2.6672 19 1 7.2955 7.2334 -4.7201 20 1 7.6271 5.0568 -3.7037 21 6 9.6944 4.2593 -2.7463 22 7 11.1635 4.2541 -2.7360 23 6 11.6423 3.6107 -1.5052 24 6 11.6586 3.5102 -3.9020 25 6 11.6584 5.6361 -2.7906 26 6 4.9266 5.4428 0.0072 27 6 3.5633 5.1938 0.0009 28 7 3.1015 3.9625 0.0008 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.9584 2.2353 0.0011 35 1 7.7985 3.7882 0.5140 36 1 7.5215 5.5464 0.5146 37 1 8.7917 8.9726 -3.2961 38 1 9.3279 3.2347 -2.8093 39 1 9.3391 4.8259 -3.6070 40 1 11.1713 2.6335 -1.3992 41 1 12.7242 3.4890 -1.5561 42 1 11.3866 4.2324 -0.6472 43 1 11.3033 3.9875 -4.8152 44 1 12.7486 3.5059 -3.8942 45 1 11.2914 2.4847 -3.8614 46 1 11.4958 6.1186 -1.8269 47 1 12.7241 5.6315 -3.0195 48 1 11.1225 6.1835 -3.5661 49 1 5.2955 6.4578 0.0119 50 1 2.8706 6.0224 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224127549.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:54 Heat of formation + Delta-G solvation = 23.619875 kcal Electronic energy + Delta-G solvation = -30197.562836 eV Core-core repulsion = 26116.592030 eV Total energy + Delta-G solvation = -4080.970806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.196 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.41177 -41.78124 -40.61388 -38.82769 -37.53137 -35.03899 -33.98272 -32.87381 -32.18211 -31.96134 -30.51465 -30.14239 -28.10287 -27.50561 -26.28047 -24.69155 -23.95054 -23.54131 -22.83380 -21.81291 -19.73159 -18.96411 -18.59807 -18.46223 -18.09040 -17.76372 -17.49751 -17.29460 -17.03005 -16.76514 -16.43143 -15.79687 -15.42325 -15.35360 -15.10944 -14.93980 -14.64362 -14.45336 -14.42989 -14.31597 -14.20631 -14.18606 -14.01988 -13.68108 -13.59472 -13.40562 -13.12407 -13.01885 -12.85006 -12.52519 -12.47796 -12.17252 -12.05625 -11.86837 -11.70178 -11.42640 -10.97642 -10.66171 -10.56376 -10.28094 -10.22431 -10.08494 -7.87628 -6.07900 -0.45031 0.07923 0.26524 1.45309 1.59522 1.85781 1.99289 2.14354 2.23139 2.31331 2.35005 2.74342 2.83644 3.06346 3.10203 3.16439 3.18438 3.32277 3.46861 3.54806 3.63770 3.64177 3.69027 3.71327 3.74866 3.94155 3.95244 3.98887 4.02836 4.03544 4.07253 4.14850 4.23950 4.28445 4.36347 4.51259 4.57748 4.64801 4.74639 4.78101 4.81681 4.89689 4.90554 5.09693 5.25705 5.45718 5.54799 5.56503 6.25724 6.58027 6.59118 6.94227 7.03778 7.69491 9.18181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.332 6.332 4 C 0.527 3.473 5 O -0.502 6.502 6 C 0.082 3.918 7 C -0.088 4.088 8 C -0.052 4.052 9 C 0.111 3.889 10 O -0.384 6.384 11 C 0.166 3.834 12 H 0.054 0.946 13 C -0.594 4.594 14 H 0.091 0.909 15 C 0.095 3.905 16 N -0.847 5.847 17 Si 0.897 3.103 18 H -0.268 1.268 19 H -0.300 1.300 20 H -0.260 1.260 21 C -0.009 4.009 22 N -0.255 5.255 23 C -0.046 4.046 24 C -0.041 4.041 25 C -0.036 4.036 26 C -0.114 4.114 27 C 0.097 3.903 28 N -0.432 5.432 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.150 0.850 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.282 0.718 38 H 0.106 0.894 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.126 0.874 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.111 0.889 46 H 0.154 0.846 47 H 0.091 0.909 48 H 0.117 0.883 49 H 0.149 0.851 50 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.518 -9.841 -1.442 14.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.248 6.248 4 C 0.370 3.630 5 O -0.389 6.389 6 C -0.054 4.054 7 C -0.108 4.108 8 C -0.060 4.060 9 C 0.035 3.965 10 O -0.304 6.304 11 C 0.109 3.891 12 H 0.072 0.928 13 C -0.629 4.629 14 H 0.109 0.891 15 C -0.118 4.118 16 N -0.478 5.478 17 Si 0.727 3.273 18 H -0.193 1.193 19 H -0.228 1.228 20 H -0.187 1.187 21 C -0.130 4.130 22 N 0.087 4.913 23 C -0.188 4.188 24 C -0.182 4.182 25 C -0.176 4.176 26 C -0.134 4.134 27 C -0.063 4.063 28 N -0.144 5.144 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.167 0.833 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.144 0.856 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.144 0.856 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.130 0.870 46 H 0.172 0.828 47 H 0.109 0.891 48 H 0.136 0.864 49 H 0.167 0.833 50 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.664 -10.161 -1.688 14.124 hybrid contribution 0.033 -0.069 -0.419 0.426 sum 9.697 -10.230 -2.107 14.252 Atomic orbital electron populations 1.21811 0.92150 1.03143 1.03886 1.23154 0.95830 0.79703 1.02742 1.86682 1.22741 1.32340 1.83012 1.20740 0.81201 0.88368 0.72648 1.90845 1.60757 1.41411 1.45933 1.19966 0.90180 0.90769 1.04454 1.21955 0.94485 0.98297 0.96093 1.20132 0.96312 0.92319 0.97242 1.21147 0.88113 1.01743 0.85459 1.87807 1.24590 1.93112 1.24888 1.20355 0.81218 0.97009 0.90511 0.92824 1.21154 1.31591 0.89941 1.20246 0.89089 1.25024 0.95876 0.94684 0.96197 1.69881 1.38309 1.07793 1.31818 0.86697 0.84059 0.78108 0.78411 1.19340 1.22807 1.18659 1.24494 0.75602 1.05690 1.07220 1.45709 1.15541 1.16287 1.13810 1.24099 1.04307 1.02252 0.88124 1.24047 1.04478 1.00230 0.89483 1.24571 1.00967 0.78844 1.13210 1.22573 0.94345 1.01010 0.95425 1.22946 0.93937 0.93715 0.95729 1.67645 1.39401 0.99143 1.08168 0.91242 0.91273 0.89990 0.91018 0.90969 0.83276 0.92328 0.90446 0.90794 0.87609 0.85621 0.87144 0.86891 0.85589 0.86608 0.86588 0.86990 0.82784 0.89080 0.86414 0.83312 0.81269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.02 10.29 37.16 0.38 0.40 16 2 C 0.06 0.11 6.19 37.16 0.23 0.34 16 3 O -0.33 -1.58 10.04 -40.44 -0.41 -1.98 16 4 C 0.53 2.78 7.95 34.77 0.28 3.06 16 5 O -0.50 -3.12 16.11 -19.21 -0.31 -3.43 16 6 C 0.08 0.39 6.75 -83.03 -0.56 -0.17 16 7 C -0.09 -0.24 9.34 -39.04 -0.36 -0.61 16 8 C -0.05 -0.12 5.54 -104.35 -0.58 -0.70 16 9 C 0.11 0.08 5.91 36.00 0.21 0.29 16 10 O -0.38 -0.73 6.41 -35.23 -0.23 -0.96 16 11 C 0.17 -0.21 2.01 -27.88 -0.06 -0.27 16 12 H 0.05 -0.22 5.40 -51.93 -0.28 -0.50 16 13 C -0.59 -1.98 6.15 -34.44 -0.21 -2.19 16 14 H 0.09 0.48 7.36 -52.49 -0.39 0.10 16 15 C 0.09 0.65 4.84 -17.82 -0.09 0.57 16 16 N -0.85 -8.63 13.96 55.43 0.77 -7.86 16 17 Si 0.90 6.10 24.34 -169.99 -4.14 1.96 16 18 H -0.27 -2.38 7.11 56.52 0.40 -1.98 16 19 H -0.30 -2.66 7.11 56.52 0.40 -2.26 16 20 H -0.26 -1.07 5.06 56.52 0.29 -0.79 16 21 C -0.01 0.05 3.23 -3.82 -0.01 0.04 16 22 N -0.25 2.54 0.05 -395.62 -0.02 2.52 16 23 C -0.05 0.55 7.40 60.06 0.44 0.99 16 24 C -0.04 0.52 7.96 60.06 0.48 0.99 16 25 C -0.04 0.27 6.93 60.06 0.42 0.68 16 26 C -0.11 -0.28 9.82 -39.31 -0.39 -0.67 16 27 C 0.10 0.27 11.18 -17.56 -0.20 0.07 16 28 N -0.43 -2.14 10.12 -9.81 -0.10 -2.24 16 29 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 30 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.08 -0.15 8.14 -51.92 -0.42 -0.58 16 32 H 0.07 0.10 8.14 -51.92 -0.42 -0.33 16 33 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 34 H 0.15 0.19 7.64 -52.48 -0.40 -0.22 16 35 H 0.06 -0.11 8.05 -51.93 -0.42 -0.53 16 36 H 0.08 0.09 8.10 -51.93 -0.42 -0.33 16 37 H 0.28 2.94 8.31 -40.82 -0.34 2.60 16 38 H 0.11 -0.75 8.07 -51.93 -0.42 -1.17 16 39 H 0.13 -0.37 4.52 -51.93 -0.23 -0.60 16 40 H 0.11 -1.42 8.08 -51.93 -0.42 -1.84 16 41 H 0.11 -1.58 8.04 -51.93 -0.42 -2.00 16 42 H 0.13 -1.32 6.02 -51.93 -0.31 -1.63 16 43 H 0.12 -1.41 8.14 -51.93 -0.42 -1.83 16 44 H 0.12 -1.68 7.99 -51.93 -0.41 -2.10 16 45 H 0.11 -1.54 8.11 -51.93 -0.42 -1.96 16 46 H 0.15 -0.71 4.96 -51.93 -0.26 -0.97 16 47 H 0.09 -0.93 7.93 -51.93 -0.41 -1.34 16 48 H 0.12 -0.52 7.28 -51.93 -0.38 -0.90 16 49 H 0.15 0.21 8.06 -52.49 -0.42 -0.21 16 50 H 0.17 0.00 8.06 -52.49 -0.42 -0.43 16 LS Contribution 392.59 15.07 5.92 5.92 Total: 0.00 -19.44 392.59 -6.74 -26.19 By element: Atomic # 1 Polarization: -14.73 SS G_CDS: -8.22 Total: -22.95 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -0.01 Total: 2.84 kcal Atomic # 7 Polarization: -8.23 SS G_CDS: 0.66 Total: -7.57 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.94 Total: -6.38 kcal Atomic # 14 Polarization: 6.10 SS G_CDS: -4.14 Total: 1.96 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -19.44 -6.74 -26.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224127549.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.808 kcal (2) G-P(sol) polarization free energy of solvation -19.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds