Wall clock time and date at job start Tue Mar 31 2020 20:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45195 * 109.47329 * 2 1 4 4 C 1.34680 * 117.00189 * 179.97438 * 3 2 1 5 5 O 1.21430 * 120.00236 * 0.02562 * 4 3 2 6 6 C 1.48073 * 120.00029 * 180.02562 * 4 3 2 7 7 C 1.39346 * 119.72383 * 180.02562 * 6 4 3 8 8 C 1.38597 * 119.05267 * 179.97438 * 7 6 4 9 9 C 1.50693 * 120.75254 * 180.02562 * 8 7 6 10 10 O 1.42904 * 109.47253 * 90.00406 * 9 8 7 11 11 C 1.42894 * 114.00427 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.46988 * 30.00822 * 11 10 9 13 13 C 1.50701 * 109.47685 * 270.00292 * 11 10 9 14 14 H 1.07997 * 119.99732 * 124.89688 * 13 11 10 15 15 C 1.37876 * 119.99558 * 305.17841 * 13 11 10 16 16 N 1.31522 * 119.99687 * 192.14710 * 15 13 11 17 17 Si 1.86791 * 120.00460 * 12.14708 * 15 13 11 18 18 H 1.48504 * 109.46944 * 85.17950 * 17 15 13 19 19 H 1.48498 * 109.47150 * 205.17667 * 17 15 13 20 20 H 1.48498 * 109.47131 * 325.17972 * 17 15 13 21 21 C 1.53003 * 109.46909 * 150.00184 * 11 10 9 22 22 N 1.46909 * 109.46896 * 191.05651 * 21 11 10 23 23 C 1.46900 * 109.47018 * 54.22769 * 22 21 11 24 24 C 1.46898 * 109.46776 * 174.22599 * 22 21 11 25 25 C 1.46897 * 109.47044 * 294.22620 * 22 21 11 26 26 C 1.38620 * 118.49113 * 0.27993 * 8 7 6 27 27 C 1.38591 * 119.35526 * 359.43270 * 26 8 7 28 28 N 1.31507 * 120.90812 * 0.57547 * 27 26 8 29 29 H 1.09000 * 109.46758 * 299.99481 * 1 2 3 30 30 H 1.08996 * 109.46742 * 59.99738 * 1 2 3 31 31 H 1.09007 * 109.46908 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47252 * 239.99912 * 2 1 3 33 33 H 1.09001 * 109.47426 * 120.00444 * 2 1 3 34 34 H 1.08004 * 120.47507 * 359.97438 * 7 6 4 35 35 H 1.09001 * 109.47871 * 330.00579 * 9 8 7 36 36 H 1.09003 * 109.47567 * 210.00487 * 9 8 7 37 37 H 0.96989 * 120.00216 * 180.02562 * 16 15 13 38 38 H 1.08995 * 109.47195 * 311.05649 * 21 11 10 39 39 H 1.09005 * 109.47252 * 71.06008 * 21 11 10 40 40 H 1.08994 * 109.47336 * 52.64269 * 23 22 21 41 41 H 1.08994 * 109.47119 * 172.64391 * 23 22 21 42 42 H 1.09005 * 109.46885 * 292.63740 * 23 22 21 43 43 H 1.09003 * 109.47606 * 59.99906 * 24 22 21 44 44 H 1.09003 * 109.47151 * 180.02562 * 24 22 21 45 45 H 1.09001 * 109.47192 * 299.99532 * 24 22 21 46 46 H 1.08996 * 109.47288 * 73.28036 * 25 22 21 47 47 H 1.08998 * 109.46681 * 193.28403 * 25 22 21 48 48 H 1.09005 * 109.46792 * 313.27950 * 25 22 21 49 49 H 1.07996 * 120.32203 * 179.71794 * 26 8 7 50 50 H 1.07999 * 119.54449 * 180.32500 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3492 1.5454 0.0005 5 8 4.0890 0.5824 0.0005 6 6 3.9152 2.9136 0.0011 7 6 5.2975 3.0896 0.0012 8 6 5.8122 4.3764 0.0012 9 6 7.3008 4.6109 0.0006 10 8 7.7708 4.6854 -1.3469 11 6 9.1778 4.9076 -1.4603 12 1 9.6855 4.4673 -0.6021 13 6 9.4509 6.3892 -1.4999 14 1 10.1334 6.8315 -0.7894 15 6 8.8248 7.1806 -2.4394 16 7 9.2323 8.4156 -2.6355 17 14 7.3979 6.4990 -3.4336 18 1 6.1368 6.6647 -2.6672 19 1 7.2955 7.2334 -4.7201 20 1 7.6271 5.0568 -3.7037 21 6 9.6944 4.2593 -2.7463 22 7 11.1635 4.2541 -2.7360 23 6 11.6423 3.6107 -1.5052 24 6 11.6586 3.5102 -3.9020 25 6 11.6584 5.6361 -2.7906 26 6 4.9266 5.4428 0.0072 27 6 3.5633 5.1938 0.0009 28 7 3.1015 3.9625 0.0008 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.9584 2.2353 0.0011 35 1 7.7985 3.7882 0.5140 36 1 7.5215 5.5464 0.5146 37 1 8.7917 8.9726 -3.2961 38 1 9.3279 3.2347 -2.8093 39 1 9.3391 4.8259 -3.6070 40 1 11.1713 2.6335 -1.3992 41 1 12.7242 3.4890 -1.5561 42 1 11.3866 4.2324 -0.6472 43 1 11.3033 3.9875 -4.8152 44 1 12.7486 3.5059 -3.8942 45 1 11.2914 2.4847 -3.8614 46 1 11.4958 6.1186 -1.8269 47 1 12.7241 5.6315 -3.0195 48 1 11.1225 6.1835 -3.5661 49 1 5.2955 6.4578 0.0119 50 1 2.8706 6.0224 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224127549.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:53 Heat of formation + Delta-G solvation = 16.484121 kcal Electronic energy + Delta-G solvation = -30197.872266 eV Core-core repulsion = 26116.592030 eV Total energy + Delta-G solvation = -4081.280236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.196 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.72855 -42.04712 -40.86630 -38.87283 -37.84862 -35.26981 -34.30944 -33.05132 -32.31538 -31.84817 -29.56830 -29.52757 -27.92808 -27.58865 -26.49550 -24.36852 -24.10447 -23.68460 -22.62564 -22.04968 -19.67130 -19.20824 -18.36585 -18.05334 -17.83603 -17.76863 -17.49469 -17.43614 -17.13734 -16.75533 -16.61317 -15.93276 -15.56210 -15.30711 -15.20715 -14.72022 -14.64023 -14.61887 -14.46685 -13.90866 -13.68322 -13.60686 -13.34448 -13.25605 -13.21130 -13.10787 -13.02519 -12.99887 -12.98278 -12.69108 -12.59976 -12.56997 -12.16405 -12.09000 -11.95234 -11.61728 -11.24928 -10.89861 -10.83360 -10.74824 -10.45912 -10.25025 -8.44766 -6.53913 -0.70809 -0.07237 0.96056 1.15693 1.28354 1.37165 1.49564 1.57865 2.26737 2.45319 2.76349 2.88697 2.94778 3.08739 3.13583 3.36834 3.55741 3.72434 3.75158 3.82460 3.92345 3.94887 3.99300 4.10992 4.14004 4.27653 4.28575 4.29636 4.34820 4.42558 4.43108 4.51317 4.55418 4.61137 4.66328 4.67952 4.73651 4.78224 4.80438 4.81630 4.86475 4.93857 5.01592 5.11259 5.27323 5.28769 5.30837 5.36798 5.95812 6.29896 6.30381 6.64065 6.67825 7.22983 8.64271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.346 6.346 4 C 0.527 3.473 5 O -0.517 6.517 6 C 0.061 3.939 7 C -0.081 4.081 8 C -0.054 4.054 9 C 0.110 3.890 10 O -0.402 6.402 11 C 0.157 3.843 12 H 0.094 0.906 13 C -0.546 4.546 14 H 0.071 0.929 15 C 0.067 3.933 16 N -0.907 5.907 17 Si 0.916 3.084 18 H -0.300 1.300 19 H -0.339 1.339 20 H -0.213 1.213 21 C -0.002 4.002 22 N -0.243 5.243 23 C -0.053 4.053 24 C -0.046 4.046 25 C -0.031 4.031 26 C -0.121 4.121 27 C 0.092 3.908 28 N -0.456 5.456 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.167 0.833 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.265 0.735 38 H 0.141 0.859 39 H 0.099 0.901 40 H 0.132 0.868 41 H 0.142 0.858 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.142 0.858 45 H 0.133 0.867 46 H 0.123 0.877 47 H 0.127 0.873 48 H 0.083 0.917 49 H 0.153 0.847 50 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.473 -13.343 -0.876 18.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.261 6.261 4 C 0.370 3.630 5 O -0.406 6.406 6 C -0.074 4.074 7 C -0.101 4.101 8 C -0.062 4.062 9 C 0.034 3.966 10 O -0.322 6.322 11 C 0.100 3.900 12 H 0.111 0.889 13 C -0.583 4.583 14 H 0.089 0.911 15 C -0.137 4.137 16 N -0.543 5.543 17 Si 0.749 3.251 18 H -0.228 1.228 19 H -0.271 1.271 20 H -0.137 1.137 21 C -0.125 4.125 22 N 0.099 4.901 23 C -0.193 4.193 24 C -0.186 4.186 25 C -0.172 4.172 26 C -0.141 4.141 27 C -0.068 4.068 28 N -0.169 5.169 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.185 0.815 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.159 0.841 39 H 0.117 0.883 40 H 0.151 0.849 41 H 0.160 0.840 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.160 0.840 45 H 0.151 0.849 46 H 0.141 0.859 47 H 0.146 0.854 48 H 0.102 0.898 49 H 0.171 0.829 50 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 11.621 -13.738 -1.114 18.029 hybrid contribution -0.536 0.974 -0.495 1.217 sum 11.085 -12.764 -1.609 16.982 Atomic orbital electron populations 1.21832 0.90688 1.04441 1.03553 1.23416 0.97012 0.78592 1.03128 1.86682 1.22620 1.34041 1.82780 1.20906 0.81289 0.88558 0.72203 1.90815 1.60993 1.41861 1.46930 1.20120 0.91083 0.90525 1.05687 1.22106 0.93879 0.98966 0.95127 1.20378 0.97324 0.92017 0.96518 1.21277 0.87292 1.02799 0.85209 1.87747 1.25900 1.92967 1.25611 1.20585 0.80430 0.94316 0.94629 0.88858 1.21428 1.27862 0.92493 1.16541 0.91106 1.25291 0.96726 0.94430 0.97300 1.70007 1.40577 1.09615 1.34150 0.86462 0.82305 0.80363 0.75949 1.22772 1.27081 1.13738 1.24096 0.78620 1.06617 1.03117 1.45557 1.12831 1.15543 1.16210 1.24334 1.06436 1.02443 0.86135 1.24291 1.06094 1.00513 0.87681 1.24282 1.02867 0.80066 1.10028 1.22771 0.94537 1.01566 0.95206 1.23307 0.94646 0.93688 0.95199 1.67618 1.40194 0.99843 1.09204 0.91509 0.91627 0.87837 0.90667 0.90542 0.81514 0.88630 0.91319 0.92590 0.84150 0.88304 0.84938 0.84023 0.87191 0.87534 0.84009 0.84881 0.85880 0.85433 0.89799 0.82898 0.79301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.08 10.29 71.98 0.74 0.82 16 2 C 0.05 0.20 6.19 71.98 0.45 0.64 16 3 O -0.35 -3.54 10.04 -55.89 -0.56 -4.11 16 4 C 0.53 5.82 7.95 70.43 0.56 6.38 16 5 O -0.52 -6.43 16.11 20.06 0.32 -6.11 16 6 C 0.06 0.60 6.75 41.88 0.28 0.88 16 7 C -0.08 -0.39 9.34 22.62 0.21 -0.18 16 8 C -0.05 -0.22 5.54 -19.69 -0.11 -0.33 16 9 C 0.11 -0.01 5.91 71.23 0.42 0.41 16 10 O -0.40 -0.91 6.41 -148.98 -0.96 -1.87 16 11 C 0.16 -0.65 2.01 29.85 0.06 -0.60 16 12 H 0.09 -1.08 5.40 -2.39 -0.01 -1.09 16 13 C -0.55 -4.14 6.15 25.60 0.16 -3.98 16 14 H 0.07 0.86 7.36 -2.91 -0.02 0.84 16 15 C 0.07 1.12 4.84 84.65 0.41 1.52 16 16 N -0.91 -22.35 13.96 21.45 0.30 -22.05 16 17 Si 0.92 14.59 24.34 68.60 1.67 16.26 16 18 H -0.30 -6.25 7.11 99.48 0.71 -5.54 16 19 H -0.34 -7.53 7.11 99.48 0.71 -6.82 16 20 H -0.21 -1.64 5.06 99.48 0.50 -1.13 16 21 C 0.00 0.03 3.23 86.30 0.28 0.31 16 22 N -0.24 5.47 0.05 ******* -0.07 5.40 16 23 C -0.05 1.47 7.40 127.69 0.94 2.41 16 24 C -0.05 1.31 7.96 127.69 1.02 2.33 16 25 C -0.03 0.47 6.93 127.69 0.89 1.36 16 26 C -0.12 -0.68 9.82 22.45 0.22 -0.46 16 27 C 0.09 0.59 11.18 84.83 0.95 1.54 16 28 N -0.46 -4.94 10.12 -184.94 -1.87 -6.82 16 29 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.10 -0.51 8.14 -2.38 -0.02 -0.52 16 32 H 0.07 0.21 8.14 -2.38 -0.02 0.19 16 33 H 0.08 0.20 8.14 -2.39 -0.02 0.19 16 34 H 0.17 0.11 7.64 -2.91 -0.02 0.09 16 35 H 0.10 -0.70 8.05 -2.39 -0.02 -0.72 16 36 H 0.07 0.12 8.10 -2.39 -0.02 0.10 16 37 H 0.26 6.95 8.31 -92.72 -0.77 6.18 16 38 H 0.14 -2.63 8.07 -2.39 -0.02 -2.65 16 39 H 0.10 -0.66 4.52 -2.38 -0.01 -0.67 16 40 H 0.13 -4.12 8.08 -2.39 -0.02 -4.14 16 41 H 0.14 -4.62 8.04 -2.39 -0.02 -4.64 16 42 H 0.11 -2.62 6.02 -2.38 -0.01 -2.64 16 43 H 0.11 -2.78 8.14 -2.39 -0.02 -2.80 16 44 H 0.14 -4.72 7.99 -2.39 -0.02 -4.74 16 45 H 0.13 -4.28 8.11 -2.39 -0.02 -4.30 16 46 H 0.12 -1.07 4.96 -2.39 -0.01 -1.08 16 47 H 0.13 -2.85 7.93 -2.39 -0.02 -2.87 16 48 H 0.08 -0.60 7.28 -2.38 -0.02 -0.62 16 49 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 50 H 0.19 0.16 8.06 -2.91 -0.02 0.14 16 Total: 0.00 -51.91 392.59 7.03 -44.88 By element: Atomic # 1 Polarization: -39.35 SS G_CDS: 0.72 Total: -38.63 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 7.47 Total: 13.05 kcal Atomic # 7 Polarization: -21.83 SS G_CDS: -1.64 Total: -23.47 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -1.19 Total: -12.08 kcal Atomic # 14 Polarization: 14.59 SS G_CDS: 1.67 Total: 16.26 kcal Total: -51.91 7.03 -44.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224127549.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.362 kcal (2) G-P(sol) polarization free energy of solvation -51.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds