Wall clock time and date at job start Tue Mar 31 2020 21:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35893 * 116.99807 * 2 1 4 4 C 1.38801 * 120.02275 * 0.02562 * 3 2 1 5 5 C 1.38170 * 120.08273 * 179.97438 * 4 3 2 6 6 C 1.38159 * 120.12838 * 359.97438 * 5 4 3 7 7 C 1.38892 * 120.03972 * 0.04120 * 6 5 4 8 8 N 1.39922 * 120.04265 * 179.97438 * 7 6 5 9 9 C 1.34781 * 119.99961 * 214.01480 * 8 7 6 10 10 O 1.21293 * 119.99678 * 4.77446 * 9 8 7 11 11 C 1.50697 * 120.00029 * 184.77229 * 9 8 7 12 12 O 1.42897 * 109.47102 * 179.97438 * 11 9 8 13 13 C 1.42902 * 114.00220 * 183.97541 * 12 11 9 14 14 H 1.09003 * 109.46832 * 328.61852 * 13 12 11 15 15 C 1.50702 * 109.47237 * 208.62032 * 13 12 11 16 16 H 1.07998 * 120.00102 * 355.34269 * 15 13 12 17 17 C 1.37880 * 119.99812 * 175.34020 * 15 13 12 18 18 N 1.31512 * 120.00002 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99610 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47355 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47081 * 120.00521 * 19 17 15 22 22 H 1.48504 * 109.46702 * 240.00036 * 19 17 15 23 23 C 1.52993 * 109.46975 * 88.61939 * 13 12 11 24 24 N 1.46893 * 109.47573 * 52.61525 * 23 13 12 25 25 C 1.46894 * 109.47115 * 55.39956 * 24 23 13 26 26 C 1.46898 * 109.47507 * 175.40370 * 24 23 13 27 27 C 1.46896 * 109.46880 * 295.40201 * 24 23 13 28 28 C 1.38588 * 120.01673 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.47215 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47384 * 299.99759 * 1 2 3 31 31 H 1.08998 * 109.47308 * 60.00389 * 1 2 3 32 32 H 1.07998 * 119.95844 * 359.96497 * 4 3 2 33 33 H 1.08008 * 119.93680 * 180.02562 * 5 4 3 34 34 H 1.08006 * 119.98493 * 180.02562 * 6 5 4 35 35 H 0.96999 * 120.00001 * 34.01563 * 8 7 6 36 36 H 1.09001 * 109.47103 * 300.00407 * 11 9 8 37 37 H 1.09005 * 109.46945 * 60.00527 * 11 9 8 38 38 H 0.96999 * 119.99548 * 179.97438 * 18 17 15 39 39 H 1.09007 * 109.46709 * 172.61517 * 23 13 12 40 40 H 1.09007 * 109.47054 * 292.60851 * 23 13 12 41 41 H 1.09003 * 109.47263 * 42.71185 * 25 24 23 42 42 H 1.09002 * 109.47518 * 162.71533 * 25 24 23 43 43 H 1.09000 * 109.47550 * 282.71357 * 25 24 23 44 44 H 1.08996 * 109.47044 * 59.99391 * 26 24 23 45 45 H 1.08998 * 109.47288 * 180.02562 * 26 24 23 46 46 H 1.09010 * 109.46900 * 299.99722 * 26 24 23 47 47 H 1.09001 * 109.47572 * 77.27463 * 27 24 23 48 48 H 1.09008 * 109.47237 * 197.27549 * 27 24 23 49 49 H 1.08997 * 109.47311 * 317.27325 * 27 24 23 50 50 H 1.08006 * 120.06279 * 359.74808 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2904 2.3752 0.0005 5 6 1.9163 3.6070 0.0011 6 6 3.2958 3.6839 0.0016 7 6 4.0569 2.5221 0.0007 8 7 5.4540 2.5999 0.0007 9 6 6.1806 1.6718 -0.6529 10 8 5.6237 0.8197 -1.3125 11 6 7.6848 1.6928 -0.5642 12 8 8.2225 0.6170 -1.3360 13 6 9.6432 0.4914 -1.2473 14 1 10.0866 1.4763 -1.1009 15 6 10.1744 -0.1144 -2.5209 16 1 9.4899 -0.4465 -3.2874 17 6 11.5343 -0.2446 -2.7074 18 7 12.3678 0.1602 -1.7742 19 14 12.1927 -0.9948 -4.2864 20 1 11.0577 -1.3650 -5.1695 21 1 13.0577 -0.0073 -4.9804 22 1 12.9863 -2.2081 -3.9645 23 6 10.0026 -0.4106 -0.0649 24 7 9.2642 -1.6759 -0.1720 25 6 9.5392 -2.2945 -1.4756 26 6 9.6908 -2.5842 0.9008 27 6 7.8240 -1.4143 -0.0482 28 6 3.4299 1.2838 0.0005 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2119 2.3183 0.0004 33 1 1.3261 4.5115 0.0019 34 1 3.7827 4.6480 0.0024 35 1 5.8995 3.3217 0.4712 36 1 8.0584 2.6406 -0.9516 37 1 7.9890 1.5803 0.4765 38 1 13.3245 0.0683 -1.9054 39 1 11.0737 -0.6130 -0.0748 40 1 9.7357 0.0882 0.8669 41 1 10.6023 -2.2100 -1.7009 42 1 9.2567 -3.3469 -1.4453 43 1 8.9626 -1.7858 -2.2482 44 1 9.4867 -2.1251 1.8681 45 1 9.1432 -3.5232 0.8211 46 1 10.7595 -2.7783 0.8090 47 1 7.4466 -1.0075 -0.9864 48 1 7.3039 -2.3448 0.1797 49 1 7.6527 -0.6965 0.7540 50 1 4.0194 0.3788 0.0051 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224447733.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:10 Heat of formation + Delta-G solvation = 29.584453 kcal Electronic energy + Delta-G solvation = -30714.129139 eV Core-core repulsion = 26633.416976 eV Total energy + Delta-G solvation = -4080.712163 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.196 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.16203 -41.71916 -40.55588 -38.77750 -38.02257 -35.60927 -35.02974 -31.92813 -31.51614 -30.72237 -30.09283 -29.91748 -28.74189 -28.12031 -27.44947 -24.51280 -24.14310 -23.15474 -22.79523 -21.60951 -19.71316 -19.12230 -18.72031 -18.28673 -18.07925 -17.62296 -17.36863 -17.15503 -16.92488 -16.70435 -16.64341 -16.42495 -15.95386 -15.41435 -15.27212 -14.85244 -14.65771 -14.58517 -14.46232 -14.17430 -13.89663 -13.79000 -13.75472 -13.55059 -13.45592 -13.34441 -13.15919 -12.94922 -12.84497 -12.71162 -12.36203 -12.33365 -12.16414 -12.06529 -11.62878 -11.30857 -11.03885 -10.84214 -10.51893 -10.14499 -9.44131 -9.09151 -7.95536 -6.02917 0.19631 0.44508 0.67114 1.42864 1.56230 1.95181 2.13231 2.16352 2.30154 2.61419 2.65355 2.68913 2.78212 2.79491 3.12123 3.36461 3.38952 3.49854 3.54071 3.77178 3.81277 3.84991 3.86677 3.90224 4.01040 4.06274 4.10740 4.11227 4.13996 4.19237 4.19630 4.23082 4.33506 4.49598 4.51607 4.52989 4.64038 4.72892 4.76221 4.97460 5.16194 5.19393 5.20643 5.32295 5.45027 5.77097 5.91000 6.13760 6.14935 6.35688 6.41007 6.95571 7.07711 7.66200 9.10646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.147 3.853 4 C -0.223 4.223 5 C -0.059 4.059 6 C -0.182 4.182 7 C 0.186 3.814 8 N -0.674 5.674 9 C 0.511 3.489 10 O -0.493 6.493 11 C 0.038 3.962 12 O -0.365 6.365 13 C 0.197 3.803 14 H 0.069 0.931 15 C -0.545 4.545 16 H 0.086 0.914 17 C 0.068 3.932 18 N -0.880 5.880 19 Si 0.902 3.098 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.275 1.275 23 C -0.026 4.026 24 N -0.249 5.249 25 C -0.027 4.027 26 C -0.042 4.042 27 C -0.046 4.046 28 C -0.156 4.156 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.414 0.586 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.282 0.718 39 H 0.150 0.850 40 H 0.085 0.915 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.143 0.857 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.113 0.887 47 H 0.157 0.843 48 H 0.095 0.905 49 H 0.093 0.907 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.079 -2.990 10.787 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.100 3.900 4 C -0.242 4.242 5 C -0.077 4.077 6 C -0.202 4.202 7 C 0.092 3.908 8 N -0.321 5.321 9 C 0.298 3.702 10 O -0.365 6.365 11 C -0.042 4.042 12 O -0.284 6.284 13 C 0.140 3.860 14 H 0.086 0.914 15 C -0.582 4.582 16 H 0.104 0.896 17 C -0.138 4.138 18 N -0.516 5.516 19 Si 0.727 3.273 20 H -0.187 1.187 21 H -0.196 1.196 22 H -0.200 1.200 23 C -0.147 4.147 24 N 0.093 4.907 25 C -0.167 4.167 26 C -0.184 4.184 27 C -0.187 4.187 28 C -0.177 4.177 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.251 0.749 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.167 0.833 40 H 0.104 0.896 41 H 0.142 0.858 42 H 0.098 0.902 43 H 0.161 0.839 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.132 0.868 47 H 0.175 0.825 48 H 0.113 0.887 49 H 0.112 0.888 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.203 -3.954 10.225 13.117 hybrid contribution 0.701 0.622 -0.187 0.956 sum -6.503 -3.331 10.037 12.415 Atomic orbital electron populations 1.23106 0.77942 1.04250 1.01535 1.86080 1.21675 1.26692 1.88395 1.18773 0.91771 0.84371 0.95043 1.21279 1.00356 0.92302 1.10290 1.20751 0.93764 0.97277 0.95940 1.20831 0.94068 0.97024 1.08283 1.17273 0.82114 0.93207 0.98211 1.43429 1.04565 1.30463 1.53660 1.20648 0.89500 0.81368 0.78718 1.90782 1.72448 1.35892 1.37363 1.22212 0.90220 0.94493 0.97294 1.88003 1.23779 1.47552 1.69058 1.20287 0.76112 0.96398 0.93203 0.91382 1.21066 0.91943 1.43406 1.01748 0.89645 1.24972 0.96195 0.94912 0.97748 1.69708 1.04731 1.43463 1.33655 0.86285 0.79829 0.79393 0.81767 1.18681 1.19614 1.20031 1.24817 1.02341 0.83939 1.03598 1.45729 1.14680 1.15407 1.14892 1.24680 1.09691 0.98556 0.83796 1.24017 1.05995 0.96262 0.92153 1.24532 0.78418 1.05058 1.10690 1.20186 0.91708 0.97839 1.07921 0.88017 0.92475 0.92408 0.85222 0.85109 0.85328 0.74924 0.89292 0.90654 0.90750 0.83261 0.89635 0.85753 0.90207 0.83942 0.87548 0.87286 0.86826 0.82543 0.88678 0.88846 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 9.81 101.05 0.99 0.95 16 2 O -0.32 -0.67 10.49 -19.40 -0.20 -0.87 16 3 C 0.15 0.32 6.68 -39.24 -0.26 0.06 16 4 C -0.22 -0.12 9.04 -39.40 -0.36 -0.47 16 5 C -0.06 0.02 10.03 -39.64 -0.40 -0.38 16 6 C -0.18 0.07 9.96 -39.37 -0.39 -0.32 16 7 C 0.19 0.10 6.27 -83.72 -0.52 -0.42 16 8 N -0.67 1.30 5.34 -9.88 -0.05 1.25 16 9 C 0.51 -0.22 7.65 -10.99 -0.08 -0.30 16 10 O -0.49 -1.70 13.77 -14.36 -0.20 -1.89 16 11 C 0.04 -0.10 5.54 36.00 0.20 0.10 16 12 O -0.36 0.07 5.52 -55.14 -0.30 -0.24 16 13 C 0.20 0.17 2.22 -27.89 -0.06 0.11 16 14 H 0.07 0.22 7.84 -51.93 -0.41 -0.19 16 15 C -0.55 -2.43 5.26 -34.44 -0.18 -2.62 16 16 H 0.09 0.48 6.86 -52.49 -0.36 0.12 16 17 C 0.07 0.43 4.05 -17.82 -0.07 0.36 16 18 N -0.88 -6.48 11.66 55.43 0.65 -5.83 16 19 Si 0.90 6.09 29.52 -169.99 -5.02 1.07 16 20 H -0.26 -1.88 7.11 56.52 0.40 -1.48 16 21 H -0.27 -2.44 7.11 56.52 0.40 -2.04 16 22 H -0.27 -1.89 7.11 56.52 0.40 -1.48 16 23 C -0.03 0.09 4.04 -3.83 -0.02 0.07 16 24 N -0.25 1.65 0.05 -395.63 -0.02 1.63 16 25 C -0.03 0.12 6.79 60.06 0.41 0.53 16 26 C -0.04 0.41 7.89 60.06 0.47 0.88 16 27 C -0.05 0.30 7.04 60.06 0.42 0.72 16 28 C -0.16 -0.35 8.58 -39.25 -0.34 -0.69 16 29 H 0.10 -0.32 8.14 -51.93 -0.42 -0.74 16 30 H 0.06 -0.15 7.66 -51.93 -0.40 -0.55 16 31 H 0.06 -0.13 7.66 -51.93 -0.40 -0.52 16 32 H 0.13 -0.17 6.29 -52.49 -0.33 -0.50 16 33 H 0.13 -0.33 8.06 -52.48 -0.42 -0.75 16 34 H 0.13 -0.33 8.06 -52.48 -0.42 -0.75 16 35 H 0.41 -2.20 8.82 -40.82 -0.36 -2.56 16 36 H 0.09 -0.25 8.14 -51.93 -0.42 -0.67 16 37 H 0.08 -0.45 7.64 -51.93 -0.40 -0.84 16 38 H 0.28 2.26 8.31 -40.82 -0.34 1.92 16 39 H 0.15 -0.15 6.24 -51.93 -0.32 -0.48 16 40 H 0.09 -0.50 7.64 -51.93 -0.40 -0.90 16 41 H 0.12 -0.25 5.90 -51.93 -0.31 -0.56 16 42 H 0.08 -0.58 7.84 -51.93 -0.41 -0.99 16 43 H 0.14 -0.29 4.90 -51.93 -0.25 -0.54 16 44 H 0.11 -1.16 8.14 -51.93 -0.42 -1.58 16 45 H 0.11 -1.21 7.89 -51.93 -0.41 -1.62 16 46 H 0.11 -1.05 8.12 -51.92 -0.42 -1.47 16 47 H 0.16 -0.50 4.59 -51.93 -0.24 -0.74 16 48 H 0.09 -0.81 7.85 -51.92 -0.41 -1.21 16 49 H 0.09 -0.69 7.09 -51.93 -0.37 -1.06 16 50 H 0.14 0.40 6.47 -52.48 -0.34 0.06 16 LS Contribution 384.64 15.07 5.80 5.80 Total: 0.00 -15.33 384.64 -7.31 -22.64 By element: Atomic # 1 Polarization: -14.36 SS G_CDS: -7.77 Total: -22.13 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -0.19 Total: -1.42 kcal Atomic # 7 Polarization: -3.53 SS G_CDS: 0.57 Total: -2.96 kcal Atomic # 8 Polarization: -2.30 SS G_CDS: -0.71 Total: -3.00 kcal Atomic # 14 Polarization: 6.09 SS G_CDS: -5.02 Total: 1.07 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -15.33 -7.31 -22.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224447733.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.227 kcal (2) G-P(sol) polarization free energy of solvation -15.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds