Wall clock time and date at job start Tue Mar 31 2020 21:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35893 * 116.99807 * 2 1 4 4 C 1.38801 * 120.02275 * 0.02562 * 3 2 1 5 5 C 1.38170 * 120.08273 * 179.97438 * 4 3 2 6 6 C 1.38159 * 120.12838 * 359.97438 * 5 4 3 7 7 C 1.38892 * 120.03972 * 0.04120 * 6 5 4 8 8 N 1.39922 * 120.04265 * 179.97438 * 7 6 5 9 9 C 1.34781 * 119.99961 * 214.01480 * 8 7 6 10 10 O 1.21293 * 119.99678 * 4.77446 * 9 8 7 11 11 C 1.50697 * 120.00029 * 184.77229 * 9 8 7 12 12 O 1.42897 * 109.47102 * 179.97438 * 11 9 8 13 13 C 1.42902 * 114.00220 * 183.97541 * 12 11 9 14 14 H 1.09003 * 109.46832 * 328.61852 * 13 12 11 15 15 C 1.50702 * 109.47237 * 208.62032 * 13 12 11 16 16 H 1.07998 * 120.00102 * 355.34269 * 15 13 12 17 17 C 1.37880 * 119.99812 * 175.34020 * 15 13 12 18 18 N 1.31512 * 120.00002 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99610 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47355 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47081 * 120.00521 * 19 17 15 22 22 H 1.48504 * 109.46702 * 240.00036 * 19 17 15 23 23 C 1.52993 * 109.46975 * 88.61939 * 13 12 11 24 24 N 1.46893 * 109.47573 * 52.61525 * 23 13 12 25 25 C 1.46894 * 109.47115 * 55.39956 * 24 23 13 26 26 C 1.46898 * 109.47507 * 175.40370 * 24 23 13 27 27 C 1.46896 * 109.46880 * 295.40201 * 24 23 13 28 28 C 1.38588 * 120.01673 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.47215 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47384 * 299.99759 * 1 2 3 31 31 H 1.08998 * 109.47308 * 60.00389 * 1 2 3 32 32 H 1.07998 * 119.95844 * 359.96497 * 4 3 2 33 33 H 1.08008 * 119.93680 * 180.02562 * 5 4 3 34 34 H 1.08006 * 119.98493 * 180.02562 * 6 5 4 35 35 H 0.96999 * 120.00001 * 34.01563 * 8 7 6 36 36 H 1.09001 * 109.47103 * 300.00407 * 11 9 8 37 37 H 1.09005 * 109.46945 * 60.00527 * 11 9 8 38 38 H 0.96999 * 119.99548 * 179.97438 * 18 17 15 39 39 H 1.09007 * 109.46709 * 172.61517 * 23 13 12 40 40 H 1.09007 * 109.47054 * 292.60851 * 23 13 12 41 41 H 1.09003 * 109.47263 * 42.71185 * 25 24 23 42 42 H 1.09002 * 109.47518 * 162.71533 * 25 24 23 43 43 H 1.09000 * 109.47550 * 282.71357 * 25 24 23 44 44 H 1.08996 * 109.47044 * 59.99391 * 26 24 23 45 45 H 1.08998 * 109.47288 * 180.02562 * 26 24 23 46 46 H 1.09010 * 109.46900 * 299.99722 * 26 24 23 47 47 H 1.09001 * 109.47572 * 77.27463 * 27 24 23 48 48 H 1.09008 * 109.47237 * 197.27549 * 27 24 23 49 49 H 1.08997 * 109.47311 * 317.27325 * 27 24 23 50 50 H 1.08006 * 120.06279 * 359.74808 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2904 2.3752 0.0005 5 6 1.9163 3.6070 0.0011 6 6 3.2958 3.6839 0.0016 7 6 4.0569 2.5221 0.0007 8 7 5.4540 2.5999 0.0007 9 6 6.1806 1.6718 -0.6529 10 8 5.6237 0.8197 -1.3125 11 6 7.6848 1.6928 -0.5642 12 8 8.2225 0.6170 -1.3360 13 6 9.6432 0.4914 -1.2473 14 1 10.0866 1.4763 -1.1009 15 6 10.1744 -0.1144 -2.5209 16 1 9.4899 -0.4465 -3.2874 17 6 11.5343 -0.2446 -2.7074 18 7 12.3678 0.1602 -1.7742 19 14 12.1927 -0.9948 -4.2864 20 1 11.0577 -1.3650 -5.1695 21 1 13.0577 -0.0073 -4.9804 22 1 12.9863 -2.2081 -3.9645 23 6 10.0026 -0.4106 -0.0649 24 7 9.2642 -1.6759 -0.1720 25 6 9.5392 -2.2945 -1.4756 26 6 9.6908 -2.5842 0.9008 27 6 7.8240 -1.4143 -0.0482 28 6 3.4299 1.2838 0.0005 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2119 2.3183 0.0004 33 1 1.3261 4.5115 0.0019 34 1 3.7827 4.6480 0.0024 35 1 5.8995 3.3217 0.4712 36 1 8.0584 2.6406 -0.9516 37 1 7.9890 1.5803 0.4765 38 1 13.3245 0.0683 -1.9054 39 1 11.0737 -0.6130 -0.0748 40 1 9.7357 0.0882 0.8669 41 1 10.6023 -2.2100 -1.7009 42 1 9.2567 -3.3469 -1.4453 43 1 8.9626 -1.7858 -2.2482 44 1 9.4867 -2.1251 1.8681 45 1 9.1432 -3.5232 0.8211 46 1 10.7595 -2.7783 0.8090 47 1 7.4466 -1.0075 -0.9864 48 1 7.3039 -2.3448 0.1797 49 1 7.6527 -0.6965 0.7540 50 1 4.0194 0.3788 0.0051 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224447733.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:08 Heat of formation + Delta-G solvation = 26.696057 kcal Electronic energy + Delta-G solvation = -30714.254389 eV Core-core repulsion = 26633.416976 eV Total energy + Delta-G solvation = -4080.837413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.196 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.76720 -41.67535 -40.53551 -38.70732 -37.99754 -35.58544 -35.34570 -31.91837 -31.50504 -30.66823 -29.71395 -29.36198 -28.57485 -27.99028 -27.45897 -24.38378 -24.08884 -23.09225 -22.64589 -21.55946 -19.68271 -19.20261 -18.55702 -18.08271 -17.74050 -17.43367 -17.26996 -17.03691 -16.84163 -16.66335 -16.62451 -16.57761 -15.98436 -15.40100 -15.31098 -14.64047 -14.50921 -14.44637 -14.30527 -13.92017 -13.72773 -13.56014 -13.37405 -13.33194 -13.23381 -13.15951 -12.99942 -12.83105 -12.75149 -12.68224 -12.66630 -12.36518 -12.27224 -12.13557 -12.00866 -11.31970 -11.24470 -10.83597 -10.75274 -10.32313 -9.45487 -9.06469 -8.45746 -6.45529 0.20459 0.44357 1.16230 1.32498 1.49118 1.50473 1.53833 1.67838 2.24497 2.38097 2.79538 2.87755 3.01328 3.15565 3.23734 3.33364 3.67991 3.87659 4.02690 4.11261 4.11832 4.20475 4.21389 4.25945 4.28992 4.31592 4.37471 4.38831 4.43715 4.45419 4.54220 4.55487 4.65653 4.69603 4.75828 4.77641 4.80791 4.89799 4.99297 5.23076 5.24633 5.26037 5.28479 5.32880 5.48261 5.54941 5.81264 5.83081 6.15256 6.40387 6.43183 6.68138 7.07701 7.20819 8.59117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.126 3.874 4 C -0.230 4.230 5 C -0.063 4.063 6 C -0.183 4.183 7 C 0.178 3.822 8 N -0.660 5.660 9 C 0.513 3.487 10 O -0.537 6.537 11 C 0.037 3.963 12 O -0.375 6.375 13 C 0.199 3.801 14 H 0.046 0.954 15 C -0.525 4.525 16 H 0.068 0.932 17 C 0.054 3.946 18 N -0.895 5.895 19 Si 0.920 3.080 20 H -0.271 1.271 21 H -0.304 1.304 22 H -0.275 1.275 23 C -0.011 4.011 24 N -0.240 5.240 25 C -0.026 4.026 26 C -0.045 4.045 27 C -0.044 4.044 28 C -0.178 4.178 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.432 0.568 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.272 0.728 39 H 0.130 0.870 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.128 0.872 45 H 0.131 0.869 46 H 0.109 0.891 47 H 0.123 0.877 48 H 0.120 0.880 49 H 0.109 0.891 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.367 -2.602 13.373 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.080 3.920 4 C -0.249 4.249 5 C -0.081 4.081 6 C -0.203 4.203 7 C 0.084 3.916 8 N -0.308 5.308 9 C 0.301 3.699 10 O -0.412 6.412 11 C -0.042 4.042 12 O -0.294 6.294 13 C 0.143 3.857 14 H 0.064 0.936 15 C -0.563 4.563 16 H 0.086 0.914 17 C -0.149 4.149 18 N -0.532 5.532 19 Si 0.749 3.251 20 H -0.196 1.196 21 H -0.232 1.232 22 H -0.200 1.200 23 C -0.133 4.133 24 N 0.103 4.897 25 C -0.167 4.167 26 C -0.185 4.185 27 C -0.185 4.185 28 C -0.199 4.199 29 H 0.133 0.867 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.163 0.837 33 H 0.173 0.827 34 H 0.171 0.829 35 H 0.271 0.729 36 H 0.112 0.888 37 H 0.136 0.864 38 H 0.082 0.918 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.117 0.883 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.128 0.872 47 H 0.141 0.859 48 H 0.138 0.862 49 H 0.127 0.873 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.497 -3.555 12.831 15.795 hybrid contribution 0.957 0.517 -1.051 1.513 sum -7.540 -3.039 11.780 14.313 Atomic orbital electron populations 1.23323 0.76389 1.05435 1.02312 1.86040 1.23458 1.27185 1.88620 1.19020 0.92074 0.84974 0.95926 1.21522 1.01193 0.92148 1.10050 1.21125 0.94177 0.97821 0.94978 1.21153 0.94242 0.97615 1.07311 1.17428 0.83176 0.93020 0.98018 1.43325 1.03742 1.30585 1.53186 1.21014 0.90281 0.80705 0.77880 1.90776 1.73341 1.37696 1.39381 1.22374 0.88461 0.93958 0.99407 1.88042 1.22719 1.48351 1.70295 1.19970 0.76670 0.96037 0.93070 0.93623 1.21176 0.91049 1.41165 1.02893 0.91417 1.24946 0.96859 0.95867 0.97217 1.69747 1.03988 1.45724 1.33761 0.86080 0.78679 0.78404 0.81957 1.19591 1.23165 1.20035 1.24348 1.01456 0.84731 1.02788 1.45540 1.14576 1.14632 1.14992 1.24390 1.07489 1.00383 0.84455 1.24227 1.06125 0.96583 0.91598 1.24465 0.77997 1.06718 1.09350 1.20263 0.92041 0.98163 1.09418 0.86731 0.91325 0.91929 0.83721 0.82735 0.82946 0.72854 0.88788 0.86350 0.91810 0.85244 0.85859 0.88264 0.86804 0.86876 0.85333 0.85104 0.87208 0.85925 0.86206 0.87282 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.06 16 2 O -0.34 -1.86 10.49 -92.34 -0.97 -2.83 16 3 C 0.13 0.68 6.68 22.49 0.15 0.83 16 4 C -0.23 -0.21 9.04 22.39 0.20 -0.01 16 5 C -0.06 0.11 10.03 22.23 0.22 0.33 16 6 C -0.18 0.34 9.96 22.41 0.22 0.57 16 7 C 0.18 0.18 6.27 38.14 0.24 0.42 16 8 N -0.66 3.00 5.34 -303.54 -1.62 1.38 16 9 C 0.51 -0.47 7.65 87.66 0.67 0.20 16 10 O -0.54 -4.43 13.77 15.97 0.22 -4.21 16 11 C 0.04 -0.23 5.54 71.23 0.39 0.17 16 12 O -0.37 0.01 5.52 -129.94 -0.72 -0.71 16 13 C 0.20 0.45 2.22 29.85 0.07 0.52 16 14 H 0.05 0.31 7.84 -2.39 -0.02 0.30 16 15 C -0.53 -5.73 5.26 25.60 0.13 -5.59 16 16 H 0.07 0.96 6.86 -2.91 -0.02 0.94 16 17 C 0.05 0.81 4.05 84.66 0.34 1.16 16 18 N -0.89 -14.84 11.66 21.45 0.25 -14.59 16 19 Si 0.92 14.95 29.52 68.60 2.03 16.98 16 20 H -0.27 -4.62 7.11 99.48 0.71 -3.91 16 21 H -0.30 -6.57 7.11 99.48 0.71 -5.86 16 22 H -0.27 -4.34 7.11 99.48 0.71 -3.63 16 23 C -0.01 0.08 4.04 86.30 0.35 0.43 16 24 N -0.24 3.44 0.05 ******* -0.07 3.37 16 25 C -0.03 0.22 6.79 127.69 0.87 1.08 16 26 C -0.04 0.97 7.89 127.69 1.01 1.98 16 27 C -0.04 0.64 7.04 127.69 0.90 1.54 16 28 C -0.18 -1.02 8.58 22.49 0.19 -0.83 16 29 H 0.11 -0.70 8.14 -2.38 -0.02 -0.72 16 30 H 0.07 -0.38 7.66 -2.39 -0.02 -0.40 16 31 H 0.06 -0.26 7.66 -2.39 -0.02 -0.28 16 32 H 0.15 -0.46 6.29 -2.91 -0.02 -0.48 16 33 H 0.16 -1.09 8.06 -2.91 -0.02 -1.11 16 34 H 0.15 -1.11 8.06 -2.91 -0.02 -1.13 16 35 H 0.43 -5.29 8.82 -92.71 -0.82 -6.11 16 36 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 37 H 0.12 -1.75 7.64 -2.38 -0.02 -1.77 16 38 H 0.27 4.98 8.31 -92.71 -0.77 4.21 16 39 H 0.13 -0.28 6.24 -2.38 -0.01 -0.30 16 40 H 0.12 -1.84 7.64 -2.38 -0.02 -1.86 16 41 H 0.10 -0.26 5.90 -2.39 -0.01 -0.27 16 42 H 0.11 -1.74 7.84 -2.39 -0.02 -1.76 16 43 H 0.11 -0.24 4.90 -2.39 -0.01 -0.25 16 44 H 0.13 -3.27 8.14 -2.39 -0.02 -3.29 16 45 H 0.13 -3.33 7.89 -2.39 -0.02 -3.35 16 46 H 0.11 -2.20 8.12 -2.38 -0.02 -2.22 16 47 H 0.12 -0.73 4.59 -2.39 -0.01 -0.74 16 48 H 0.12 -2.29 7.85 -2.38 -0.02 -2.31 16 49 H 0.11 -1.90 7.09 -2.39 -0.02 -1.91 16 50 H 0.13 0.99 6.47 -2.91 -0.02 0.97 16 Total: 0.00 -40.96 384.64 6.33 -34.63 By element: Atomic # 1 Polarization: -38.00 SS G_CDS: 0.13 Total: -37.87 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 7.07 Total: 3.84 kcal Atomic # 7 Polarization: -8.40 SS G_CDS: -1.44 Total: -9.83 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -1.47 Total: -7.74 kcal Atomic # 14 Polarization: 14.95 SS G_CDS: 2.03 Total: 16.98 kcal Total: -40.96 6.33 -34.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224447733.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.325 kcal (2) G-P(sol) polarization free energy of solvation -40.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds