Wall clock time and date at job start Tue Mar 31 2020 21:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40445 * 126.81849 * 2 1 4 4 C 1.30719 * 106.78903 * 180.02562 * 3 2 1 5 5 N 1.33241 * 108.94621 * 359.97438 * 4 3 2 6 6 C 1.30823 * 109.82976 * 0.02562 * 5 4 3 7 7 C 1.50706 * 125.96117 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.47385 * 90.01985 * 7 6 5 9 9 C 1.42898 * 114.00170 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47204 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99730 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99917 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99813 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47043 * 179.97438 * 13 12 10 15 15 C 1.53049 * 109.45942 * 295.02756 * 14 13 12 16 16 C 1.53189 * 109.31130 * 178.60205 * 15 14 13 17 17 N 1.46923 * 108.76480 * 54.65422 * 16 15 14 18 18 C 1.36938 * 120.62964 * 126.40469 * 17 16 15 19 19 H 1.07992 * 120.00222 * 331.82809 * 18 17 16 20 20 C 1.38817 * 119.99925 * 151.82168 * 18 17 16 21 21 N 1.31618 * 120.00150 * 343.07967 * 20 18 17 22 22 Si 1.86803 * 119.99847 * 163.06680 * 20 18 17 23 23 H 1.48498 * 109.46972 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46866 * 120.00399 * 22 20 18 25 25 H 1.48497 * 109.47530 * 240.00563 * 22 20 18 26 26 C 1.46928 * 118.74117 * 306.37960 * 17 16 15 27 27 C 1.53035 * 109.46071 * 174.97222 * 14 13 12 28 28 H 1.08998 * 109.47213 * 270.00094 * 1 2 3 29 29 H 1.08993 * 109.47125 * 30.00223 * 1 2 3 30 30 H 1.09006 * 109.46404 * 150.00093 * 1 2 3 31 31 H 1.07997 * 125.52422 * 180.26310 * 4 3 2 32 32 H 1.09000 * 109.46793 * 210.02000 * 7 6 5 33 33 H 1.08999 * 109.47035 * 330.01723 * 7 6 5 34 34 H 1.08994 * 109.46775 * 299.99609 * 9 8 7 35 35 H 1.08997 * 109.47121 * 60.00112 * 9 8 7 36 36 H 0.96997 * 120.00112 * 359.97438 * 12 10 9 37 37 H 1.08996 * 109.46772 * 299.99776 * 13 12 10 38 38 H 1.08997 * 109.46987 * 59.99896 * 13 12 10 39 39 H 1.09000 * 109.46059 * 54.99887 * 14 13 12 40 40 H 1.09006 * 109.49408 * 298.56671 * 15 14 13 41 41 H 1.08995 * 109.49689 * 58.66071 * 15 14 13 42 42 H 1.08997 * 109.59639 * 294.86770 * 16 15 14 43 43 H 1.08995 * 109.70104 * 174.50721 * 16 15 14 44 44 H 0.96996 * 120.00027 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.58711 * 293.82717 * 26 17 16 46 46 H 1.08998 * 109.70510 * 173.46465 * 26 17 16 47 47 H 1.09000 * 109.49668 * 301.33613 * 27 14 13 48 48 H 1.09000 * 109.49992 * 61.40008 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 -0.0006 5 7 3.5097 -0.6556 -0.0003 6 6 2.2708 -1.0760 -0.0002 7 6 1.8248 -2.5156 -0.0005 8 8 1.6837 -2.9708 1.3466 9 6 1.2626 -4.3317 1.4592 10 6 1.1480 -4.7033 2.9151 11 8 1.4023 -3.8836 3.7720 12 7 0.7638 -5.9469 3.2650 13 6 0.6518 -6.3080 4.6804 14 6 0.2011 -7.7652 4.8009 15 6 -1.2123 -7.9104 4.2322 16 6 -1.6466 -9.3766 4.3225 17 7 -1.5073 -9.8259 5.7144 18 6 -2.5633 -10.3989 6.3716 19 1 -3.5750 -10.1380 6.0986 20 6 -2.3332 -11.3153 7.3885 21 7 -1.1527 -11.8854 7.5061 22 14 -3.6989 -11.7392 8.5904 23 1 -4.9199 -10.9681 8.2442 24 1 -3.9932 -13.1927 8.5127 25 1 -3.2696 -11.3942 9.9695 26 6 -0.2134 -9.6492 6.3878 27 6 0.2049 -8.1799 6.2740 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3632 -0.8901 -0.5139 31 1 4.4254 1.2875 0.0033 32 1 0.8672 -2.5991 -0.5145 33 1 2.5674 -3.1259 -0.5144 34 1 0.2935 -4.4533 0.9754 35 1 1.9939 -4.9795 0.9758 36 1 0.5608 -6.6026 2.5796 37 1 1.6209 -6.1858 5.1642 38 1 -0.0798 -5.6606 5.1637 39 1 0.8848 -8.4041 4.2420 40 1 -1.9010 -7.2906 4.8066 41 1 -1.2194 -7.5926 3.1896 42 1 -1.0139 -9.9857 3.6769 43 1 -2.6865 -9.4718 4.0101 44 1 -0.9918 -12.5254 8.2169 45 1 0.5361 -10.2805 5.9105 46 1 -0.3058 -9.9224 7.4389 47 1 1.2067 -8.0540 6.6848 48 1 -0.4968 -7.5573 6.8290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225045785.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:27 Heat of formation + Delta-G solvation = 32.062068 kcal Electronic energy + Delta-G solvation = -28309.814944 eV Core-core repulsion = 24209.732798 eV Total energy + Delta-G solvation = -4100.082146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.51491 -39.99549 -38.33054 -37.61285 -35.00379 -34.51591 -32.96235 -32.42784 -30.94116 -29.88076 -29.19945 -27.97635 -26.96443 -26.04077 -23.90142 -22.44210 -22.29680 -21.20536 -21.09362 -20.62818 -19.16396 -17.88354 -17.52886 -17.21446 -16.78259 -16.58033 -16.20086 -15.50145 -15.29930 -15.21317 -14.90606 -14.57633 -14.07655 -13.89412 -13.65835 -13.58937 -13.57131 -13.45953 -13.22592 -12.79900 -12.52956 -12.39642 -12.34792 -12.02784 -11.87854 -11.37964 -11.02241 -10.76171 -10.54817 -10.44974 -10.35470 -10.29083 -10.23206 -10.18639 -10.10628 -10.01313 -9.87050 -9.59314 -9.47032 -9.08690 -8.49960 -6.70061 -5.81844 -3.24442 1.01407 1.82517 2.32465 2.47455 2.78117 3.35071 3.40862 3.43346 3.45150 3.93271 4.00038 4.20078 4.47116 4.48169 4.50240 4.63475 4.67537 4.71972 4.77613 4.94298 5.05050 5.05969 5.17962 5.32616 5.38207 5.56097 5.81046 5.82429 5.88657 5.98523 6.01278 6.08661 6.24081 6.27559 6.31398 6.38102 6.42808 6.56195 6.64755 6.71880 6.76928 6.93194 7.32839 7.39870 7.63171 7.66311 7.77243 8.10304 8.42489 9.18738 9.82195 10.38608 11.26645 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034407 B = 0.001613 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.601473 B =17356.004917 C =17572.315022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.367 5.367 3 N -0.315 5.315 4 C 0.200 3.800 5 N -0.525 5.525 6 C 0.278 3.722 7 C 0.141 3.859 8 O -0.354 6.354 9 C 0.045 3.955 10 C 0.510 3.490 11 O -0.522 6.522 12 N -0.722 5.722 13 C 0.125 3.875 14 C -0.090 4.090 15 C -0.127 4.127 16 C 0.145 3.855 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.172 3.828 27 C -0.133 4.133 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.221 0.779 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.401 0.599 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.053 0.947 44 H 0.253 0.747 45 H 0.018 0.982 46 H 0.088 0.912 47 H 0.051 0.949 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.807 18.656 -19.004 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.159 5.159 3 N -0.144 5.144 4 C -0.102 4.102 5 N -0.253 5.253 6 C 0.002 3.998 7 C 0.062 3.938 8 O -0.271 6.271 9 C -0.035 4.035 10 C 0.294 3.706 11 O -0.396 6.396 12 N -0.376 5.376 13 C 0.002 3.998 14 C -0.109 4.109 15 C -0.166 4.166 16 C 0.019 3.981 17 N -0.315 5.315 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.215 1.215 26 C 0.046 3.954 27 C -0.173 4.173 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.237 0.763 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.236 0.764 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.036 0.964 46 H 0.106 0.894 47 H 0.070 0.930 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.053 19.789 -18.071 27.271 hybrid contribution -0.925 -0.821 0.135 1.244 sum 4.128 18.969 -17.936 26.430 Atomic orbital electron populations 1.22042 0.73399 1.04863 1.04602 1.50266 1.08239 1.03887 1.53500 1.78080 1.02231 1.07958 1.26102 1.26018 0.95852 0.90215 0.98161 1.70455 1.19405 1.11735 1.23736 1.23682 0.86451 0.91633 0.98083 1.20657 1.01218 0.86331 0.85592 1.88087 1.88983 1.26308 1.23719 1.22291 1.01282 0.84305 0.95663 1.20084 0.77798 0.82534 0.90156 1.90760 1.47924 1.49298 1.51665 1.45965 1.69359 1.12512 1.09733 1.21613 1.01442 0.96760 0.79978 1.21318 0.97445 0.93001 0.99111 1.22081 0.95835 1.00228 0.98485 1.20885 0.98473 0.91144 0.87645 1.44053 1.10246 1.69841 1.07374 1.19218 0.86927 1.17544 1.14521 0.91713 1.25047 0.96857 0.96366 1.01378 1.70032 1.22196 1.29238 1.33240 0.86243 0.81606 0.77744 0.81300 1.20277 1.21738 1.21534 1.20761 0.86109 0.88734 0.99825 1.22183 1.00100 1.01670 0.93359 0.89517 0.88668 0.88924 0.76262 0.90534 0.88805 0.89725 0.89486 0.76434 0.91630 0.91506 0.91219 0.92156 0.93514 0.96619 0.92893 0.93666 0.96421 0.89398 0.93008 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 11.33 59.85 0.68 1.14 16 2 N -0.37 -3.43 4.04 -65.10 -0.26 -3.70 16 3 N -0.32 -3.43 12.70 29.29 0.37 -3.05 16 4 C 0.20 2.00 13.03 -91.81 -1.20 0.80 16 5 N -0.52 -6.07 11.19 -11.97 -0.13 -6.21 16 6 C 0.28 2.77 7.61 -155.70 -1.19 1.58 16 7 C 0.14 0.96 6.26 36.01 0.23 1.18 16 8 O -0.35 -3.63 9.86 -55.14 -0.54 -4.17 16 9 C 0.04 0.33 6.42 36.01 0.23 0.56 16 10 C 0.51 6.11 7.91 -10.99 -0.09 6.03 16 11 O -0.52 -9.01 16.50 -14.35 -0.24 -9.25 16 12 N -0.72 -7.67 5.27 -60.29 -0.32 -7.99 16 13 C 0.12 1.66 5.06 -4.04 -0.02 1.64 16 14 C -0.09 -1.32 2.19 -90.58 -0.20 -1.52 16 15 C -0.13 -1.93 5.25 -26.61 -0.14 -2.07 16 16 C 0.15 2.81 6.52 -3.71 -0.02 2.78 16 17 N -0.59 -14.23 2.99 -172.33 -0.52 -14.74 16 18 C -0.25 -6.76 9.58 -15.06 -0.14 -6.91 16 19 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 20 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -25.73 11.19 55.49 0.62 -25.11 16 22 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.17 3.91 5.30 -3.71 -0.02 3.89 16 27 C -0.13 -2.38 5.36 -26.61 -0.14 -2.52 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.20 7.11 -51.93 -0.37 -0.17 16 31 H 0.22 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.08 0.24 7.13 -51.93 -0.37 -0.13 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.40 3.12 7.65 -40.82 -0.31 2.81 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.56 7.15 -51.93 -0.37 0.18 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.05 1.02 7.93 -51.93 -0.41 0.60 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 2.28 6.07 -51.93 -0.31 1.97 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 394.50 15.07 5.95 5.95 Total: -1.00 -37.42 394.50 -9.83 -47.25 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.62 Total: -1.87 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -2.11 Total: 6.57 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: -0.24 Total: -60.80 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.78 Total: -13.42 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.42 -9.83 -47.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225045785.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.313 kcal (2) G-P(sol) polarization free energy of solvation -37.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds