Wall clock time and date at job start Tue Mar 31 2020 21:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40445 * 126.81849 * 2 1 4 4 C 1.30719 * 106.78903 * 180.02562 * 3 2 1 5 5 N 1.33241 * 108.94621 * 359.97438 * 4 3 2 6 6 C 1.30823 * 109.82976 * 0.02562 * 5 4 3 7 7 C 1.50706 * 125.96117 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.47385 * 90.01985 * 7 6 5 9 9 C 1.42898 * 114.00170 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47204 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99730 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99917 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99813 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47043 * 179.97438 * 13 12 10 15 15 C 1.53049 * 109.45942 * 295.02756 * 14 13 12 16 16 C 1.53189 * 109.31130 * 178.60205 * 15 14 13 17 17 N 1.46923 * 108.76480 * 54.65422 * 16 15 14 18 18 C 1.36938 * 120.62964 * 126.40469 * 17 16 15 19 19 H 1.07992 * 120.00222 * 331.82809 * 18 17 16 20 20 C 1.38817 * 119.99925 * 151.82168 * 18 17 16 21 21 N 1.31618 * 120.00150 * 343.07967 * 20 18 17 22 22 Si 1.86803 * 119.99847 * 163.06680 * 20 18 17 23 23 H 1.48498 * 109.46972 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46866 * 120.00399 * 22 20 18 25 25 H 1.48497 * 109.47530 * 240.00563 * 22 20 18 26 26 C 1.46928 * 118.74117 * 306.37960 * 17 16 15 27 27 C 1.53035 * 109.46071 * 174.97222 * 14 13 12 28 28 H 1.08998 * 109.47213 * 270.00094 * 1 2 3 29 29 H 1.08993 * 109.47125 * 30.00223 * 1 2 3 30 30 H 1.09006 * 109.46404 * 150.00093 * 1 2 3 31 31 H 1.07997 * 125.52422 * 180.26310 * 4 3 2 32 32 H 1.09000 * 109.46793 * 210.02000 * 7 6 5 33 33 H 1.08999 * 109.47035 * 330.01723 * 7 6 5 34 34 H 1.08994 * 109.46775 * 299.99609 * 9 8 7 35 35 H 1.08997 * 109.47121 * 60.00112 * 9 8 7 36 36 H 0.96997 * 120.00112 * 359.97438 * 12 10 9 37 37 H 1.08996 * 109.46772 * 299.99776 * 13 12 10 38 38 H 1.08997 * 109.46987 * 59.99896 * 13 12 10 39 39 H 1.09000 * 109.46059 * 54.99887 * 14 13 12 40 40 H 1.09006 * 109.49408 * 298.56671 * 15 14 13 41 41 H 1.08995 * 109.49689 * 58.66071 * 15 14 13 42 42 H 1.08997 * 109.59639 * 294.86770 * 16 15 14 43 43 H 1.08995 * 109.70104 * 174.50721 * 16 15 14 44 44 H 0.96996 * 120.00027 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.58711 * 293.82717 * 26 17 16 46 46 H 1.08998 * 109.70510 * 173.46465 * 26 17 16 47 47 H 1.09000 * 109.49668 * 301.33613 * 27 14 13 48 48 H 1.09000 * 109.49992 * 61.40008 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 -0.0006 5 7 3.5097 -0.6556 -0.0003 6 6 2.2708 -1.0760 -0.0002 7 6 1.8248 -2.5156 -0.0005 8 8 1.6837 -2.9708 1.3466 9 6 1.2626 -4.3317 1.4592 10 6 1.1480 -4.7033 2.9151 11 8 1.4023 -3.8836 3.7720 12 7 0.7638 -5.9469 3.2650 13 6 0.6518 -6.3080 4.6804 14 6 0.2011 -7.7652 4.8009 15 6 -1.2123 -7.9104 4.2322 16 6 -1.6466 -9.3766 4.3225 17 7 -1.5073 -9.8259 5.7144 18 6 -2.5633 -10.3989 6.3716 19 1 -3.5750 -10.1380 6.0986 20 6 -2.3332 -11.3153 7.3885 21 7 -1.1527 -11.8854 7.5061 22 14 -3.6989 -11.7392 8.5904 23 1 -4.9199 -10.9681 8.2442 24 1 -3.9932 -13.1927 8.5127 25 1 -3.2696 -11.3942 9.9695 26 6 -0.2134 -9.6492 6.3878 27 6 0.2049 -8.1799 6.2740 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3632 -0.8901 -0.5139 31 1 4.4254 1.2875 0.0033 32 1 0.8672 -2.5991 -0.5145 33 1 2.5674 -3.1259 -0.5144 34 1 0.2935 -4.4533 0.9754 35 1 1.9939 -4.9795 0.9758 36 1 0.5608 -6.6026 2.5796 37 1 1.6209 -6.1858 5.1642 38 1 -0.0798 -5.6606 5.1637 39 1 0.8848 -8.4041 4.2420 40 1 -1.9010 -7.2906 4.8066 41 1 -1.2194 -7.5926 3.1896 42 1 -1.0139 -9.9857 3.6769 43 1 -2.6865 -9.4718 4.0101 44 1 -0.9918 -12.5254 8.2169 45 1 0.5361 -10.2805 5.9105 46 1 -0.3058 -9.9224 7.4389 47 1 1.2067 -8.0540 6.6848 48 1 -0.4968 -7.5573 6.8290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225045785.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:25 Heat of formation + Delta-G solvation = 6.352122 kcal Electronic energy + Delta-G solvation = -28310.929811 eV Core-core repulsion = 24209.732798 eV Total energy + Delta-G solvation = -4101.197013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.16554 -40.91098 -39.45181 -38.59379 -36.36777 -35.09075 -34.49104 -33.10224 -32.56501 -31.42141 -30.04681 -28.69772 -27.88944 -26.98801 -25.46224 -23.80607 -23.09877 -22.65069 -21.80176 -21.51881 -20.64980 -18.77958 -18.44567 -18.13810 -17.86667 -17.24942 -16.97791 -16.78536 -16.27231 -16.09653 -15.93551 -15.68084 -15.30194 -15.26547 -15.02084 -14.75572 -14.45553 -14.14169 -14.07164 -14.00224 -13.80567 -13.49104 -13.23601 -13.04188 -12.98485 -12.76838 -12.59177 -12.56896 -12.22595 -11.98282 -11.82255 -11.59539 -11.24150 -11.16468 -11.08290 -10.94378 -10.84330 -10.79169 -10.66073 -10.52407 -10.07591 -8.64819 -7.86245 -5.30793 0.36566 1.30383 1.45457 1.48248 1.57769 1.62135 1.65422 2.04260 2.51936 2.82908 3.28473 3.37362 3.52453 3.71550 3.73931 3.84186 3.89471 3.97756 4.09577 4.11434 4.27098 4.29469 4.36655 4.39698 4.54578 4.57241 4.57946 4.63764 4.72987 4.75675 4.84120 4.96283 5.05484 5.17373 5.20627 5.31748 5.32823 5.36975 5.40600 5.47639 5.58163 5.68104 5.70898 5.81225 5.89953 6.41566 6.60337 6.98979 7.17440 7.28125 7.90507 8.40441 9.19828 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034407 B = 0.001613 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.601473 B =17356.004917 C =17572.315022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.370 5.370 3 N -0.346 5.346 4 C 0.192 3.808 5 N -0.561 5.561 6 C 0.267 3.733 7 C 0.141 3.859 8 O -0.395 6.395 9 C 0.050 3.950 10 C 0.505 3.495 11 O -0.584 6.584 12 N -0.708 5.708 13 C 0.138 3.862 14 C -0.077 4.077 15 C -0.114 4.114 16 C 0.138 3.862 17 N -0.613 5.613 18 C -0.259 4.259 19 H 0.065 0.935 20 C -0.052 4.052 21 N -0.935 5.935 22 Si 0.962 3.038 23 H -0.267 1.267 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.177 3.823 27 C -0.124 4.124 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.246 0.754 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.120 0.880 36 H 0.419 0.581 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.092 0.908 42 H 0.020 0.980 43 H 0.052 0.948 44 H 0.249 0.751 45 H 0.000 1.000 46 H 0.048 0.952 47 H 0.066 0.934 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 19.171 -21.628 29.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.162 5.162 3 N -0.175 5.175 4 C -0.111 4.111 5 N -0.290 5.290 6 C -0.010 4.010 7 C 0.063 3.937 8 O -0.312 6.312 9 C -0.029 4.029 10 C 0.292 3.708 11 O -0.463 6.463 12 N -0.363 5.363 13 C 0.013 3.987 14 C -0.096 4.096 15 C -0.152 4.152 16 C 0.013 3.987 17 N -0.336 5.336 18 C -0.390 4.390 19 H 0.083 0.917 20 C -0.247 4.247 21 N -0.581 5.581 22 Si 0.791 3.209 23 H -0.191 1.191 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.052 3.948 27 C -0.164 4.164 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.145 0.855 31 H 0.262 0.738 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.146 0.854 35 H 0.137 0.863 36 H 0.257 0.743 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.110 0.890 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.018 0.982 46 H 0.067 0.933 47 H 0.084 0.916 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.083 20.297 -20.759 29.318 hybrid contribution -0.653 -0.990 0.910 1.494 sum 3.430 19.308 -19.849 27.902 Atomic orbital electron populations 1.22401 0.71243 1.07089 1.05022 1.50550 1.09500 1.03378 1.52793 1.77994 1.02857 1.09450 1.27167 1.26599 0.96613 0.90312 0.97530 1.70443 1.20935 1.12507 1.25141 1.24371 0.86266 0.93141 0.97205 1.20979 1.03860 0.84360 0.84514 1.88019 1.89601 1.27755 1.25860 1.22435 1.04567 0.83739 0.92165 1.20996 0.76086 0.81776 0.91924 1.90741 1.50691 1.51061 1.53854 1.45770 1.68726 1.12888 1.08889 1.21231 1.00536 0.95107 0.81783 1.21141 0.97673 0.94124 0.96628 1.21938 0.95353 0.96808 1.01141 1.21102 0.98818 0.93673 0.85074 1.44340 1.09814 1.69989 1.09487 1.19539 0.87840 1.16919 1.14679 0.91690 1.25759 0.98893 0.96907 1.03153 1.70175 1.23999 1.30142 1.33797 0.85280 0.79509 0.77219 0.78893 1.19126 1.21927 1.21945 1.20550 0.85565 0.91512 0.97220 1.21990 1.00419 0.97838 0.96136 0.89907 0.87773 0.85497 0.73805 0.86281 0.87260 0.85354 0.86254 0.74288 0.92442 0.92811 0.90114 0.93303 0.88961 0.96162 0.92965 0.94214 0.98235 0.93323 0.91557 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 11.33 127.77 1.45 2.09 16 2 N -0.37 -6.45 4.04 -359.86 -1.45 -7.91 16 3 N -0.35 -7.43 12.70 -61.24 -0.78 -8.20 16 4 C 0.19 3.81 13.03 180.76 2.36 6.16 16 5 N -0.56 -12.67 11.19 -191.78 -2.15 -14.81 16 6 C 0.27 4.89 7.61 138.23 1.05 5.94 16 7 C 0.14 1.42 6.26 71.24 0.45 1.86 16 8 O -0.39 -6.92 9.86 -129.94 -1.28 -8.20 16 9 C 0.05 0.52 6.42 71.24 0.46 0.97 16 10 C 0.51 10.70 7.91 87.66 0.69 11.39 16 11 O -0.58 -19.73 16.50 16.00 0.26 -19.47 16 12 N -0.71 -12.54 5.27 -463.05 -2.44 -14.98 16 13 C 0.14 3.36 5.06 86.38 0.44 3.79 16 14 C -0.08 -2.08 2.19 -10.77 -0.02 -2.10 16 15 C -0.11 -3.11 5.25 30.67 0.16 -2.95 16 16 C 0.14 5.13 6.52 86.36 0.56 5.69 16 17 N -0.61 -29.50 2.99 -699.12 -2.09 -31.59 16 18 C -0.26 -14.00 9.58 84.03 0.81 -13.19 16 19 H 0.07 3.43 7.88 -2.91 -0.02 3.40 16 20 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 21 N -0.93 -54.85 11.19 21.65 0.24 -54.61 16 22 Si 0.96 44.58 29.59 68.60 2.03 46.61 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 26 C 0.18 8.26 5.30 86.36 0.46 8.71 16 27 C -0.12 -4.38 5.36 30.67 0.16 -4.22 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.13 0.05 7.11 -2.38 -0.02 0.03 16 31 H 0.25 2.87 8.06 -2.91 -0.02 2.85 16 32 H 0.12 0.11 7.13 -2.39 -0.02 0.09 16 33 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.42 4.38 7.65 -92.71 -0.71 3.68 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.09 1.72 7.15 -2.39 -0.02 1.71 16 42 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.05 1.91 7.93 -2.39 -0.02 1.90 16 44 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 45 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 46 H 0.05 2.63 6.07 -2.39 -0.01 2.62 16 47 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -86.84 394.50 2.04 -84.81 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 0.26 Total: 6.64 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: 9.43 Total: 21.71 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -8.67 Total: -132.10 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -1.02 Total: -27.67 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -86.84 2.04 -84.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225045785.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.160 kcal (2) G-P(sol) polarization free energy of solvation -86.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds