Wall clock time and date at job start Tue Mar 31 2020 21:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35498 * 126.98236 * 2 1 4 4 N 1.30520 * 107.30700 * 179.83624 * 3 2 1 5 5 N 1.28598 * 109.66813 * 0.43726 * 4 3 2 6 6 C 1.30515 * 109.67829 * 359.72240 * 5 4 3 7 7 C 1.50694 * 126.34815 * 180.02562 * 6 5 4 8 8 O 1.42903 * 109.47071 * 269.95930 * 7 6 5 9 9 C 1.42899 * 114.00056 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47436 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99731 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00415 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00325 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47559 * 179.97438 * 13 12 10 15 15 C 1.53039 * 109.45869 * 295.03014 * 14 13 12 16 16 C 1.53198 * 109.30748 * 178.59916 * 15 14 13 17 17 N 1.46921 * 108.76913 * 54.65419 * 16 15 14 18 18 C 1.36940 * 120.63200 * 126.39934 * 17 16 15 19 19 H 1.07994 * 119.99824 * 332.61322 * 18 17 16 20 20 C 1.38810 * 119.99725 * 152.60613 * 18 17 16 21 21 N 1.31623 * 119.99734 * 159.34884 * 20 18 17 22 22 Si 1.86800 * 120.00358 * 339.35355 * 20 18 17 23 23 H 1.48495 * 109.47337 * 92.93858 * 22 20 18 24 24 H 1.48502 * 109.47065 * 212.94300 * 22 20 18 25 25 H 1.48500 * 109.46839 * 332.93763 * 22 20 18 26 26 C 1.46924 * 118.73937 * 306.38645 * 17 16 15 27 27 C 1.53034 * 109.46181 * 174.97212 * 14 13 12 28 28 H 1.09004 * 109.47229 * 269.69527 * 1 2 3 29 29 H 1.08994 * 109.47258 * 149.68649 * 1 2 3 30 30 H 1.09003 * 109.47057 * 29.68816 * 1 2 3 31 31 H 1.07996 * 126.34283 * 359.97287 * 3 2 1 32 32 H 1.09005 * 109.47590 * 29.95593 * 7 6 5 33 33 H 1.08998 * 109.47429 * 149.95823 * 7 6 5 34 34 H 1.09008 * 109.47299 * 299.99811 * 9 8 7 35 35 H 1.08999 * 109.47428 * 59.99529 * 9 8 7 36 36 H 0.97006 * 119.99699 * 359.97438 * 12 10 9 37 37 H 1.08997 * 109.47444 * 300.00065 * 13 12 10 38 38 H 1.08999 * 109.47073 * 59.99469 * 13 12 10 39 39 H 1.09003 * 109.45442 * 55.00242 * 14 13 12 40 40 H 1.08995 * 109.49650 * 298.56171 * 15 14 13 41 41 H 1.08999 * 109.50065 * 58.66069 * 15 14 13 42 42 H 1.08998 * 109.59859 * 294.85974 * 16 15 14 43 43 H 1.09002 * 109.69576 * 174.50553 * 16 15 14 44 44 H 0.96995 * 119.99781 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.58233 * 293.81919 * 26 17 16 46 46 H 1.08994 * 109.70834 * 173.46719 * 26 17 16 47 47 H 1.08998 * 109.50038 * 301.33787 * 27 14 13 48 48 H 1.09000 * 109.49881 * 61.40426 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5091 0.6429 0.0036 5 7 3.5090 -0.6430 -0.0035 6 6 2.2800 -1.0824 -0.0059 7 6 1.8476 -2.5259 -0.0132 8 8 1.7102 -2.9752 -1.3628 9 6 1.3008 -4.3390 -1.4827 10 6 1.1880 -4.7035 -2.9405 11 8 1.4335 -3.8765 -3.7931 12 7 0.8133 -5.9480 -3.2971 13 6 0.7030 -6.3021 -4.7143 14 6 0.2648 -7.7624 -4.8426 15 6 1.3581 -8.6740 -4.2806 16 6 0.9011 -10.1329 -4.3787 17 7 0.5331 -10.4203 -5.7718 18 6 1.0895 -11.4809 -6.4358 19 1 2.0701 -11.8378 -6.1577 20 6 0.3930 -12.0973 -7.4662 21 7 1.0391 -12.8170 -8.3590 22 14 -1.4612 -11.9052 -7.5860 23 1 -1.7839 -10.7577 -8.4716 24 1 -2.0520 -13.1461 -8.1486 25 1 -2.0218 -11.6594 -6.2331 26 6 -0.4433 -9.5484 -6.4389 27 6 0.0285 -8.0961 -6.3173 28 1 -0.3634 -0.0055 1.0277 29 1 -0.3633 -0.8871 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9703 2.1169 -0.0004 32 1 2.5962 -3.1322 0.4970 33 1 0.8911 -2.6214 0.5006 34 1 2.0378 -4.9831 -1.0028 35 1 0.3329 -4.4716 -0.9994 36 1 0.6165 -6.6093 -2.6152 37 1 -0.0340 -5.6578 -5.1936 38 1 1.6707 -6.1696 -5.1982 39 1 -0.6583 -7.9149 -4.2834 40 1 2.2744 -8.5401 -4.8554 41 1 1.5425 -8.4201 -3.2367 42 1 0.0372 -10.2897 -3.7328 43 1 1.7118 -10.7934 -4.0712 44 1 0.5525 -13.2473 -9.0792 45 1 -1.4169 -9.6575 -5.9610 46 1 -0.5205 -9.8208 -7.4914 47 1 -0.7335 -7.4309 -6.7233 48 1 0.9574 -7.9672 -6.8729 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225046830.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:46 Heat of formation + Delta-G solvation = 28.468331 kcal Electronic energy + Delta-G solvation = -28409.790944 eV Core-core repulsion = 24309.552962 eV Total energy + Delta-G solvation = -4100.237982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.55312 -40.07106 -38.48356 -37.80160 -35.53486 -35.16562 -32.99177 -32.14300 -31.20081 -30.41235 -29.15352 -28.23713 -27.15182 -26.10993 -23.79064 -22.85315 -22.80883 -21.51642 -21.33442 -20.74432 -19.45138 -18.00171 -17.60568 -17.28155 -16.88091 -16.76828 -16.52516 -15.67943 -15.62089 -15.40463 -15.10376 -14.87229 -14.25303 -14.05092 -13.99251 -13.89891 -13.58803 -13.40220 -13.29207 -12.88467 -12.84256 -12.47739 -12.33611 -12.05091 -11.92739 -11.81681 -11.43794 -10.87285 -10.82700 -10.68899 -10.68581 -10.54692 -10.36528 -10.18028 -10.08209 -9.91118 -9.77810 -9.67391 -9.45510 -9.17608 -8.64449 -7.00402 -5.96798 -3.32754 1.16050 1.93568 2.30293 2.41172 2.70839 3.29447 3.45259 3.46116 3.48250 3.94202 4.03226 4.11376 4.29064 4.42331 4.43082 4.50558 4.60271 4.62383 4.73827 4.75001 4.88123 4.92982 5.04714 5.05547 5.17325 5.34421 5.39731 5.62868 5.64093 5.71773 5.82982 5.87515 6.01259 6.12539 6.18637 6.26415 6.31815 6.34665 6.40595 6.44612 6.59025 6.61659 6.66700 6.92701 7.30714 7.94350 8.03429 8.28426 8.31072 8.92201 9.70119 10.07664 11.19214 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.036167 B = 0.001669 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.008482 B =16775.315042 C =16990.431255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.469 5.469 3 C 0.156 3.844 4 N -0.296 5.296 5 N -0.269 5.269 6 C 0.174 3.826 7 C 0.150 3.850 8 O -0.357 6.357 9 C 0.044 3.956 10 C 0.510 3.490 11 O -0.520 6.520 12 N -0.723 5.723 13 C 0.125 3.875 14 C -0.091 4.091 15 C -0.130 4.130 16 C 0.148 3.852 17 N -0.606 5.606 18 C -0.261 4.261 19 H 0.085 0.915 20 C 0.023 3.977 21 N -0.908 5.908 22 Si 0.884 3.116 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.272 1.272 26 C 0.127 3.873 27 C -0.127 4.127 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.222 0.778 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.401 0.599 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.021 0.979 43 H 0.063 0.937 44 H 0.262 0.738 45 H 0.024 0.976 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.508 23.713 21.372 32.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.160 5.160 3 C -0.131 4.131 4 N -0.136 5.136 5 N -0.112 5.112 6 C -0.094 4.094 7 C 0.071 3.929 8 O -0.274 6.274 9 C -0.036 4.036 10 C 0.295 3.705 11 O -0.395 6.395 12 N -0.377 5.377 13 C 0.002 3.998 14 C -0.110 4.110 15 C -0.169 4.169 16 C 0.022 3.978 17 N -0.329 5.329 18 C -0.389 4.389 19 H 0.103 0.897 20 C -0.176 4.176 21 N -0.551 5.551 22 Si 0.714 3.286 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.197 1.197 26 C 0.001 3.999 27 C -0.166 4.166 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.238 0.762 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.236 0.764 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.042 0.958 46 H 0.091 0.909 47 H 0.074 0.926 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.807 24.300 20.433 32.111 hybrid contribution -2.763 -0.297 0.305 2.795 sum -7.570 24.003 20.738 32.612 Atomic orbital electron populations 1.22193 0.74973 1.05969 1.04222 1.46190 1.09459 1.06697 1.53668 1.26533 0.87160 0.94984 1.04421 1.74317 1.18099 1.03047 1.18105 1.74286 1.16891 1.03335 1.16675 1.24252 0.87472 0.91371 1.06257 1.20505 1.01118 0.86161 0.85136 1.88092 1.89319 1.25825 1.24120 1.22272 1.01300 0.84515 0.95463 1.20102 0.77687 0.82520 0.90213 1.90764 1.47775 1.48923 1.52039 1.45936 1.69922 1.12264 1.09564 1.21567 1.02010 0.96045 0.80149 1.21308 0.99159 0.92060 0.98442 1.22088 0.98375 0.97351 0.99064 1.20912 0.97706 0.93003 0.86145 1.44344 1.49817 1.30330 1.08454 1.18921 0.99561 1.06707 1.13693 0.89746 1.25288 0.97709 0.97352 0.97275 1.69841 1.35185 1.36191 1.13857 0.86938 0.88091 0.75719 0.77830 1.21632 1.23180 1.19672 1.21318 0.91817 0.88793 0.97979 1.21999 1.01767 0.98628 0.94246 0.89665 0.88710 0.88555 0.76185 0.88938 0.90963 0.89427 0.89915 0.76428 0.91609 0.91198 0.91139 0.91584 0.92990 0.96158 0.91869 0.92766 0.95822 0.90858 0.92561 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.15 10.90 59.85 0.65 0.80 16 2 N -0.47 -3.24 3.15 -122.69 -0.39 -3.62 16 3 C 0.16 1.19 12.74 -89.94 -1.15 0.04 16 4 N -0.30 -3.63 12.21 29.69 0.36 -3.27 16 5 N -0.27 -3.56 12.21 32.79 0.40 -3.16 16 6 C 0.17 1.69 7.66 -154.99 -1.19 0.50 16 7 C 0.15 1.01 6.11 36.00 0.22 1.23 16 8 O -0.36 -3.60 9.86 -55.14 -0.54 -4.14 16 9 C 0.04 0.32 6.42 36.01 0.23 0.55 16 10 C 0.51 5.86 7.91 -10.99 -0.09 5.77 16 11 O -0.52 -8.74 16.50 -14.36 -0.24 -8.98 16 12 N -0.72 -7.13 5.27 -60.30 -0.32 -7.45 16 13 C 0.13 1.54 5.06 -4.04 -0.02 1.52 16 14 C -0.09 -1.22 2.19 -90.58 -0.20 -1.41 16 15 C -0.13 -1.85 5.25 -26.61 -0.14 -1.99 16 16 C 0.15 2.69 6.52 -3.71 -0.02 2.66 16 17 N -0.61 -13.81 2.77 -172.32 -0.48 -14.28 16 18 C -0.26 -7.15 10.04 -15.06 -0.15 -7.30 16 19 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 20 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 21 N -0.91 -27.62 13.97 55.49 0.78 -26.85 16 22 Si 0.88 22.01 24.35 -169.99 -4.14 17.88 16 23 H -0.29 -6.94 6.62 56.52 0.37 -6.56 16 24 H -0.30 -7.73 7.11 56.52 0.40 -7.32 16 25 H -0.27 -6.60 6.63 56.52 0.37 -6.23 16 26 C 0.13 2.63 4.20 -3.71 -0.02 2.62 16 27 C -0.13 -2.08 5.36 -26.61 -0.14 -2.22 16 28 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 29 H 0.09 0.21 7.81 -51.93 -0.41 -0.19 16 30 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 31 H 0.22 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.22 7.86 -51.93 -0.41 -0.19 16 34 H 0.09 0.43 8.14 -51.92 -0.42 0.00 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.40 2.79 7.65 -40.82 -0.31 2.47 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.58 7.15 -51.93 -0.37 0.20 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.02 0.49 7.08 -51.93 -0.37 0.12 16 46 H 0.07 1.70 4.50 -51.93 -0.23 1.47 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 388.32 15.07 5.85 5.85 Total: -1.00 -39.92 388.32 -8.43 -48.35 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -7.62 Total: -3.65 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -2.10 Total: 3.33 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.36 Total: -58.64 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.78 Total: -13.12 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.92 -8.43 -48.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225046830.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.822 kcal (2) G-P(sol) polarization free energy of solvation -39.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds