Wall clock time and date at job start Tue Mar 31 2020 21:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35498 * 126.98236 * 2 1 4 4 N 1.30520 * 107.30700 * 179.83624 * 3 2 1 5 5 N 1.28598 * 109.66813 * 0.43726 * 4 3 2 6 6 C 1.30515 * 109.67829 * 359.72240 * 5 4 3 7 7 C 1.50694 * 126.34815 * 180.02562 * 6 5 4 8 8 O 1.42903 * 109.47071 * 269.95930 * 7 6 5 9 9 C 1.42899 * 114.00056 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47436 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99731 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00415 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00325 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47559 * 179.97438 * 13 12 10 15 15 C 1.53039 * 109.45869 * 295.03014 * 14 13 12 16 16 C 1.53198 * 109.30748 * 178.59916 * 15 14 13 17 17 N 1.46921 * 108.76913 * 54.65419 * 16 15 14 18 18 C 1.36940 * 120.63200 * 126.39934 * 17 16 15 19 19 H 1.07994 * 119.99824 * 332.61322 * 18 17 16 20 20 C 1.38810 * 119.99725 * 152.60613 * 18 17 16 21 21 N 1.31623 * 119.99734 * 159.34884 * 20 18 17 22 22 Si 1.86800 * 120.00358 * 339.35355 * 20 18 17 23 23 H 1.48495 * 109.47337 * 92.93858 * 22 20 18 24 24 H 1.48502 * 109.47065 * 212.94300 * 22 20 18 25 25 H 1.48500 * 109.46839 * 332.93763 * 22 20 18 26 26 C 1.46924 * 118.73937 * 306.38645 * 17 16 15 27 27 C 1.53034 * 109.46181 * 174.97212 * 14 13 12 28 28 H 1.09004 * 109.47229 * 269.69527 * 1 2 3 29 29 H 1.08994 * 109.47258 * 149.68649 * 1 2 3 30 30 H 1.09003 * 109.47057 * 29.68816 * 1 2 3 31 31 H 1.07996 * 126.34283 * 359.97287 * 3 2 1 32 32 H 1.09005 * 109.47590 * 29.95593 * 7 6 5 33 33 H 1.08998 * 109.47429 * 149.95823 * 7 6 5 34 34 H 1.09008 * 109.47299 * 299.99811 * 9 8 7 35 35 H 1.08999 * 109.47428 * 59.99529 * 9 8 7 36 36 H 0.97006 * 119.99699 * 359.97438 * 12 10 9 37 37 H 1.08997 * 109.47444 * 300.00065 * 13 12 10 38 38 H 1.08999 * 109.47073 * 59.99469 * 13 12 10 39 39 H 1.09003 * 109.45442 * 55.00242 * 14 13 12 40 40 H 1.08995 * 109.49650 * 298.56171 * 15 14 13 41 41 H 1.08999 * 109.50065 * 58.66069 * 15 14 13 42 42 H 1.08998 * 109.59859 * 294.85974 * 16 15 14 43 43 H 1.09002 * 109.69576 * 174.50553 * 16 15 14 44 44 H 0.96995 * 119.99781 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.58233 * 293.81919 * 26 17 16 46 46 H 1.08994 * 109.70834 * 173.46719 * 26 17 16 47 47 H 1.08998 * 109.50038 * 301.33787 * 27 14 13 48 48 H 1.09000 * 109.49881 * 61.40426 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5091 0.6429 0.0036 5 7 3.5090 -0.6430 -0.0035 6 6 2.2800 -1.0824 -0.0059 7 6 1.8476 -2.5259 -0.0132 8 8 1.7102 -2.9752 -1.3628 9 6 1.3008 -4.3390 -1.4827 10 6 1.1880 -4.7035 -2.9405 11 8 1.4335 -3.8765 -3.7931 12 7 0.8133 -5.9480 -3.2971 13 6 0.7030 -6.3021 -4.7143 14 6 0.2648 -7.7624 -4.8426 15 6 1.3581 -8.6740 -4.2806 16 6 0.9011 -10.1329 -4.3787 17 7 0.5331 -10.4203 -5.7718 18 6 1.0895 -11.4809 -6.4358 19 1 2.0701 -11.8378 -6.1577 20 6 0.3930 -12.0973 -7.4662 21 7 1.0391 -12.8170 -8.3590 22 14 -1.4612 -11.9052 -7.5860 23 1 -1.7839 -10.7577 -8.4716 24 1 -2.0520 -13.1461 -8.1486 25 1 -2.0218 -11.6594 -6.2331 26 6 -0.4433 -9.5484 -6.4389 27 6 0.0285 -8.0961 -6.3173 28 1 -0.3634 -0.0055 1.0277 29 1 -0.3633 -0.8871 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 1.9703 2.1169 -0.0004 32 1 2.5962 -3.1322 0.4970 33 1 0.8911 -2.6214 0.5006 34 1 2.0378 -4.9831 -1.0028 35 1 0.3329 -4.4716 -0.9994 36 1 0.6165 -6.6093 -2.6152 37 1 -0.0340 -5.6578 -5.1936 38 1 1.6707 -6.1696 -5.1982 39 1 -0.6583 -7.9149 -4.2834 40 1 2.2744 -8.5401 -4.8554 41 1 1.5425 -8.4201 -3.2367 42 1 0.0372 -10.2897 -3.7328 43 1 1.7118 -10.7934 -4.0712 44 1 0.5525 -13.2473 -9.0792 45 1 -1.4169 -9.6575 -5.9610 46 1 -0.5205 -9.8208 -7.4914 47 1 -0.7335 -7.4309 -6.7233 48 1 0.9574 -7.9672 -6.8729 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225046830.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:44 Heat of formation + Delta-G solvation = -0.873251 kcal Electronic energy + Delta-G solvation = -28411.063291 eV Core-core repulsion = 24309.552962 eV Total energy + Delta-G solvation = -4101.510328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.14461 -40.94897 -39.63636 -38.65253 -36.46026 -36.01494 -34.54041 -33.00785 -32.65115 -31.86101 -29.98570 -28.62650 -28.09401 -26.99053 -25.35930 -24.21824 -23.41811 -22.79354 -22.06998 -21.62510 -20.81420 -18.84710 -18.50551 -18.20582 -17.84430 -17.41185 -17.26819 -17.03570 -16.41989 -16.27404 -15.98053 -15.87479 -15.62254 -15.27518 -15.07350 -14.89059 -14.57822 -14.40156 -14.27701 -13.94162 -13.70471 -13.64001 -13.41667 -13.19480 -13.01757 -12.88245 -12.59060 -12.52699 -12.23454 -12.10482 -11.72691 -11.57292 -11.44980 -11.29750 -11.18787 -11.14224 -10.92162 -10.84146 -10.65242 -10.44378 -10.09699 -8.90013 -8.15256 -5.46385 0.62078 1.31449 1.42008 1.51277 1.51887 1.59714 1.69454 2.00242 2.43267 2.91105 3.07407 3.39702 3.46379 3.64927 3.77416 3.82600 3.85788 3.89040 3.97305 3.98390 4.20466 4.27118 4.34295 4.40030 4.40306 4.45805 4.56556 4.59461 4.65325 4.69406 4.74652 4.78803 4.86137 4.90665 5.03536 5.09305 5.11529 5.18935 5.23651 5.30265 5.39470 5.62277 5.84375 5.89052 5.92955 6.14241 6.58204 6.95372 7.26226 7.64363 7.66098 8.05477 9.04871 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.036167 B = 0.001669 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.008482 B =16775.315042 C =16990.431255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.466 5.466 3 C 0.167 3.833 4 N -0.354 5.354 5 N -0.328 5.328 6 C 0.164 3.836 7 C 0.150 3.850 8 O -0.396 6.396 9 C 0.048 3.952 10 C 0.506 3.494 11 O -0.584 6.584 12 N -0.708 5.708 13 C 0.136 3.864 14 C -0.077 4.077 15 C -0.119 4.119 16 C 0.141 3.859 17 N -0.622 5.622 18 C -0.248 4.248 19 H 0.047 0.953 20 C -0.041 4.041 21 N -0.961 5.961 22 Si 0.951 3.049 23 H -0.276 1.276 24 H -0.314 1.314 25 H -0.255 1.255 26 C 0.120 3.880 27 C -0.123 4.123 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.264 0.736 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.420 0.580 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.096 0.904 40 H 0.041 0.959 41 H 0.095 0.905 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.260 0.740 45 H 0.040 0.960 46 H 0.044 0.956 47 H 0.081 0.919 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.941 25.514 24.511 36.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.156 5.156 3 C -0.121 4.121 4 N -0.193 5.193 5 N -0.170 5.170 6 C -0.105 4.105 7 C 0.072 3.928 8 O -0.314 6.314 9 C -0.030 4.030 10 C 0.293 3.707 11 O -0.463 6.463 12 N -0.363 5.363 13 C 0.012 3.988 14 C -0.096 4.096 15 C -0.158 4.158 16 C 0.017 3.983 17 N -0.347 5.347 18 C -0.378 4.378 19 H 0.065 0.935 20 C -0.235 4.235 21 N -0.607 5.607 22 Si 0.780 3.220 23 H -0.203 1.203 24 H -0.243 1.243 25 H -0.179 1.179 26 C -0.005 4.005 27 C -0.162 4.162 28 H 0.129 0.871 29 H 0.115 0.885 30 H 0.134 0.866 31 H 0.280 0.720 32 H 0.118 0.882 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.147 0.853 36 H 0.258 0.742 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.114 0.886 40 H 0.060 0.940 41 H 0.113 0.887 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.100 0.900 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.276 26.111 23.653 36.190 hybrid contribution -1.653 -0.817 -0.623 1.946 sum -9.928 25.293 23.029 35.618 Atomic orbital electron populations 1.22577 0.72038 1.07093 1.06238 1.46481 1.11082 1.05641 1.52388 1.27322 0.86189 0.96763 1.01847 1.74169 1.21018 1.03247 1.20855 1.74142 1.19552 1.04148 1.19158 1.24820 0.87178 0.93249 1.05240 1.20777 1.03521 0.84408 0.84095 1.88025 1.89937 1.27346 1.26132 1.22430 1.04549 0.83807 0.92245 1.20966 0.76050 0.81915 0.91818 1.90744 1.50618 1.50762 1.54171 1.45745 1.69117 1.12500 1.08892 1.21241 1.00771 0.95122 0.81712 1.21172 0.99840 0.92246 0.96366 1.21976 0.97503 0.94898 1.01451 1.21153 0.98239 0.95179 0.83778 1.44505 1.50156 1.29586 1.10459 1.18870 0.98228 1.07415 1.13273 0.93486 1.25969 1.02258 0.97958 0.97324 1.69990 1.36886 1.38708 1.15124 0.85836 0.82133 0.75401 0.78601 1.20315 1.24302 1.17892 1.21386 0.92100 0.90785 0.96198 1.21901 1.01439 0.96208 0.96676 0.87118 0.88490 0.86636 0.72037 0.88204 0.86602 0.86697 0.85290 0.74201 0.91686 0.93441 0.88565 0.93970 0.88673 0.93743 0.93119 0.93098 0.94216 0.93820 0.90016 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.04 10.90 127.77 1.39 1.44 16 2 N -0.47 -5.47 3.15 -542.08 -1.71 -7.18 16 3 C 0.17 2.33 12.74 180.11 2.30 4.63 16 4 N -0.35 -8.88 12.21 -59.99 -0.73 -9.61 16 5 N -0.33 -8.88 12.21 -50.16 -0.61 -9.49 16 6 C 0.16 3.01 7.66 137.98 1.06 4.06 16 7 C 0.15 1.61 6.11 71.23 0.43 2.05 16 8 O -0.40 -7.04 9.86 -129.94 -1.28 -8.32 16 9 C 0.05 0.50 6.42 71.24 0.46 0.95 16 10 C 0.51 10.24 7.91 87.66 0.69 10.93 16 11 O -0.58 -19.24 16.50 16.00 0.26 -18.97 16 12 N -0.71 -11.27 5.27 -463.08 -2.44 -13.71 16 13 C 0.14 2.98 5.06 86.38 0.44 3.41 16 14 C -0.08 -1.80 2.19 -10.77 -0.02 -1.82 16 15 C -0.12 -3.06 5.25 30.67 0.16 -2.90 16 16 C 0.14 4.80 6.52 86.37 0.56 5.37 16 17 N -0.62 -27.89 2.77 -699.11 -1.94 -29.82 16 18 C -0.25 -13.96 10.04 84.03 0.84 -13.12 16 19 H 0.05 2.92 8.06 -2.91 -0.02 2.90 16 20 C -0.04 -2.38 5.23 84.86 0.44 -1.94 16 21 N -0.96 -60.82 13.97 21.65 0.30 -60.52 16 22 Si 0.95 45.91 24.35 68.60 1.67 47.58 16 23 H -0.28 -12.64 6.62 99.48 0.66 -11.98 16 24 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 25 H -0.25 -11.44 6.63 99.48 0.66 -10.78 16 26 C 0.12 4.77 4.20 86.36 0.36 5.13 16 27 C -0.12 -3.77 5.36 30.67 0.16 -3.60 16 28 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H 0.10 0.08 7.81 -2.39 -0.02 0.06 16 30 H 0.12 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.26 0.74 8.06 -2.91 -0.02 0.71 16 32 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.12 0.16 7.86 -2.39 -0.02 0.14 16 34 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.42 3.51 7.65 -92.70 -0.71 2.80 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 1.65 7.15 -2.39 -0.02 1.63 16 42 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.05 1.82 7.93 -2.39 -0.02 1.81 16 44 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 45 H 0.04 1.47 7.08 -2.39 -0.02 1.45 16 46 H 0.04 1.99 4.50 -2.39 -0.01 1.98 16 47 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -96.03 388.32 2.97 -93.06 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 0.16 Total: 2.39 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 9.28 Total: 14.59 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -7.13 Total: -130.33 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -1.02 Total: -27.29 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.67 Total: 47.58 kcal Total: -96.03 2.97 -93.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225046830.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.189 kcal (2) G-P(sol) polarization free energy of solvation -96.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds