Wall clock time and date at job start Tue Mar 31 2020 21:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37367 * 125.82961 * 2 1 4 4 N 1.29399 * 108.82837 * 179.97438 * 3 2 1 5 5 N 1.40174 * 108.14107 * 359.97438 * 4 3 2 6 6 C 1.46499 * 126.35171 * 179.97438 * 5 4 3 7 7 C 1.52993 * 109.47052 * 270.02906 * 6 5 4 8 8 C 1.50703 * 109.46859 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00188 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99960 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99971 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.46955 * 34.99585 * 11 10 8 13 13 C 1.53002 * 109.46688 * 274.99603 * 11 10 8 14 14 C 1.52997 * 109.46817 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47127 * 60.00361 * 14 13 11 16 16 C 1.52999 * 109.46626 * 299.99539 * 15 14 13 17 17 C 1.52996 * 109.47258 * 154.99970 * 11 10 8 18 18 H 1.09000 * 109.47380 * 59.99156 * 17 11 10 19 19 N 1.46510 * 109.46858 * 299.99700 * 17 11 10 20 20 C 1.36936 * 119.99911 * 154.99804 * 19 17 11 21 21 H 1.08004 * 119.99844 * 0.02562 * 20 19 17 22 22 C 1.38806 * 120.00080 * 179.97438 * 20 19 17 23 23 N 1.31619 * 119.99818 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00022 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47003 * 60.00806 * 24 22 20 26 26 H 1.48508 * 109.46880 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47042 * 300.00380 * 24 22 20 28 28 C 1.34805 * 125.83472 * 180.28659 * 2 1 3 29 29 O 1.21818 * 126.30653 * 0.04110 * 28 2 1 30 30 H 1.09004 * 109.47550 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47157 * 120.02512 * 1 2 3 32 32 H 1.09003 * 109.47468 * 240.02543 * 1 2 3 33 33 H 1.07997 * 125.58351 * 359.96334 * 3 2 1 34 34 H 1.09002 * 109.46914 * 150.02817 * 6 5 4 35 35 H 1.09002 * 109.46856 * 30.02835 * 6 5 4 36 36 H 1.09002 * 109.47333 * 60.00168 * 7 6 5 37 37 H 1.08994 * 109.47578 * 299.99760 * 7 6 5 38 38 H 0.96998 * 120.00021 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.47070 * 60.00104 * 13 11 10 40 40 H 1.08996 * 109.47407 * 299.99704 * 13 11 10 41 41 H 1.09001 * 109.47502 * 300.00518 * 14 13 11 42 42 H 1.09001 * 109.47289 * 180.02562 * 14 13 11 43 43 H 1.08993 * 109.46955 * 60.00011 * 15 14 13 44 44 H 1.09000 * 109.47050 * 179.97438 * 15 14 13 45 45 H 1.09002 * 109.46719 * 180.02562 * 16 15 14 46 46 H 1.08993 * 109.47839 * 299.99931 * 16 15 14 47 47 H 0.96994 * 119.99768 * 334.99990 * 19 17 11 48 48 H 0.97010 * 119.99788 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5065 0.7354 0.0005 5 7 3.5344 -0.6661 0.0015 6 6 4.7313 -1.5108 0.0019 7 6 5.1481 -1.8053 -1.4405 8 6 6.3797 -2.6737 -1.4401 9 8 6.8751 -3.0231 -0.3896 10 7 6.9308 -3.0621 -2.6071 11 6 8.1278 -3.9068 -2.6067 12 1 8.0845 -4.5979 -1.7650 13 6 9.3730 -3.0267 -2.4805 14 6 10.6230 -3.9088 -2.4795 15 6 10.6891 -4.7013 -3.7866 16 6 9.4439 -5.5814 -3.9128 17 6 8.1936 -4.6988 -3.9141 18 1 8.2368 -4.0077 -4.7559 19 7 7.0012 -5.5415 -4.0350 20 6 6.5636 -5.9353 -5.2713 21 1 7.0977 -5.6250 -6.1573 22 6 5.4343 -6.7342 -5.3859 23 7 4.7838 -7.1128 -4.3061 24 14 4.8378 -7.2720 -7.0725 25 1 5.9025 -8.0573 -7.7468 26 1 3.6221 -8.1118 -6.9229 27 1 4.5142 -6.0741 -7.8882 28 6 2.2542 -1.0929 -0.0055 29 8 1.8806 -2.2523 -0.0120 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3633 -0.5142 -0.8897 32 1 -0.3634 -0.5134 0.8902 33 1 1.9248 2.1374 -0.0006 34 1 4.5149 -2.4473 0.5160 35 1 5.5413 -0.9930 0.5156 36 1 5.3645 -0.8688 -1.9546 37 1 4.3382 -2.3231 -1.9542 38 1 6.5345 -2.7830 -3.4473 39 1 9.3261 -2.4624 -1.5491 40 1 9.4163 -2.3356 -3.3222 41 1 10.5795 -4.5998 -1.6375 42 1 11.5101 -3.2819 -2.3891 43 1 10.7326 -4.0105 -4.6285 44 1 11.5799 -5.3295 -3.7861 45 1 9.4912 -6.1464 -4.8438 46 1 9.4004 -6.2723 -3.0709 47 1 6.5219 -5.8205 -3.2393 48 1 3.9943 -7.6708 -4.3862 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227720717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:14 Heat of formation + Delta-G solvation = 8.138390 kcal Electronic energy + Delta-G solvation = -29600.342532 eV Core-core repulsion = 25499.222978 eV Total energy + Delta-G solvation = -4101.119554 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.53274 -39.75905 -37.92066 -37.31482 -35.75433 -34.02335 -33.70260 -32.85584 -31.12966 -30.24411 -29.08351 -27.84164 -27.41207 -24.82656 -23.69587 -22.65474 -21.93161 -21.15782 -21.01021 -20.03415 -19.36973 -17.84979 -17.26957 -16.93174 -16.54566 -16.19208 -15.95503 -15.62389 -15.13936 -14.97279 -14.61279 -14.15720 -13.99533 -13.87694 -13.57616 -13.40052 -13.11513 -13.05581 -12.93268 -12.76185 -12.58806 -12.35281 -12.08962 -12.05286 -12.03510 -11.24125 -11.06766 -10.90310 -10.82021 -10.73417 -10.54575 -10.34143 -10.31614 -10.26570 -10.17981 -9.75448 -9.62795 -9.49492 -8.90449 -8.67920 -8.56030 -6.97322 -5.75974 -3.06194 1.60810 1.76244 2.58334 2.91467 2.96651 3.42457 3.47255 3.49015 3.60173 4.21975 4.48612 4.56696 4.76653 4.82636 4.93658 5.03568 5.08079 5.14264 5.18265 5.19696 5.33517 5.46705 5.53958 5.55485 5.58569 5.72904 5.75580 5.84281 5.88147 5.91618 5.97700 5.99685 6.09459 6.13357 6.33982 6.37363 6.47245 6.49979 6.53083 6.60232 6.87696 6.92043 7.10235 7.46715 7.68008 7.91365 7.95369 8.40881 8.57280 9.52465 10.09013 10.44144 11.45726 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009247 B = 0.003225 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.255324 B = 8679.112093 C =11179.519783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.564 5.564 3 C 0.249 3.751 4 N -0.281 5.281 5 N -0.450 5.450 6 C 0.179 3.821 7 C -0.161 4.161 8 C 0.524 3.476 9 O -0.552 6.552 10 N -0.705 5.705 11 C 0.140 3.860 12 H 0.084 0.916 13 C -0.123 4.123 14 C -0.114 4.114 15 C -0.119 4.119 16 C -0.133 4.133 17 C 0.173 3.827 18 H 0.050 0.950 19 N -0.722 5.722 20 C -0.243 4.243 21 H 0.069 0.931 22 C -0.009 4.009 23 N -0.928 5.928 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.287 1.287 28 C 0.640 3.360 29 O -0.544 6.544 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.229 0.771 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.404 0.596 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.385 0.615 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.591 20.025 7.664 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.294 5.294 3 C -0.050 4.050 4 N -0.102 5.102 5 N -0.271 5.271 6 C 0.058 3.942 7 C -0.202 4.202 8 C 0.309 3.691 9 O -0.431 6.431 10 N -0.354 5.354 11 C 0.035 3.965 12 H 0.102 0.898 13 C -0.162 4.162 14 C -0.152 4.152 15 C -0.157 4.157 16 C -0.174 4.174 17 C 0.062 3.938 18 H 0.068 0.932 19 N -0.362 5.362 20 C -0.375 4.375 21 H 0.087 0.913 22 C -0.206 4.206 23 N -0.575 5.575 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.214 1.214 28 C 0.339 3.661 29 O -0.416 6.416 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.245 0.755 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.238 0.762 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.219 0.781 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.559 19.117 8.234 20.822 hybrid contribution -1.593 -0.503 -1.256 2.090 sum -2.152 18.613 6.978 19.994 Atomic orbital electron populations 1.21791 0.74264 1.03965 1.04067 1.45971 1.08880 1.06757 1.67786 1.25915 0.85963 0.94653 0.98509 1.76965 1.18151 0.92341 1.22770 1.49071 1.06321 1.02893 1.68834 1.21198 0.83007 0.93557 0.96413 1.22025 0.97918 1.01245 0.99009 1.20126 0.84388 0.80431 0.84127 1.90682 1.63978 1.57230 1.31228 1.45886 1.29486 1.51612 1.08368 1.21313 0.82992 0.91671 1.00509 0.89754 1.21866 0.94414 0.98236 1.01716 1.21473 0.96883 0.98428 0.98402 1.21581 0.98440 0.98615 0.97113 1.22230 0.94318 0.98628 1.02243 1.20472 0.88182 0.91711 0.93398 0.93222 1.42410 1.28141 1.59151 1.06528 1.19143 1.07411 1.25559 0.85348 0.91296 1.24738 0.98362 1.00688 0.96811 1.69663 1.20745 1.40465 1.26665 0.86317 0.78013 0.78229 0.83862 1.21312 1.21748 1.21354 1.16848 0.82185 0.85143 0.81881 1.91153 1.77571 1.15088 1.57789 0.88971 0.90388 0.90514 0.75459 0.87713 0.87944 0.88461 0.88062 0.76183 0.91916 0.92085 0.91959 0.92413 0.92419 0.92708 0.91632 0.92452 0.78111 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.56 11.08 59.85 0.66 1.23 16 2 N -0.56 -5.35 3.14 -130.10 -0.41 -5.76 16 3 C 0.25 1.76 12.61 -89.11 -1.12 0.64 16 4 N -0.28 -3.03 12.53 29.87 0.37 -2.66 16 5 N -0.45 -6.04 3.63 -65.12 -0.24 -6.27 16 6 C 0.18 2.47 5.68 -4.05 -0.02 2.45 16 7 C -0.16 -2.23 6.02 -27.89 -0.17 -2.39 16 8 C 0.52 8.67 7.79 -10.98 -0.09 8.58 16 9 O -0.55 -10.60 15.65 5.55 0.09 -10.51 16 10 N -0.70 -11.56 4.91 -53.80 -0.26 -11.82 16 11 C 0.14 2.40 1.98 -67.93 -0.13 2.27 16 12 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 13 C -0.12 -1.75 5.49 -26.73 -0.15 -1.90 16 14 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 15 C -0.12 -1.65 5.92 -26.73 -0.16 -1.81 16 16 C -0.13 -2.34 5.50 -26.71 -0.15 -2.48 16 17 C 0.17 3.29 2.30 -67.90 -0.16 3.13 16 18 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 19 N -0.72 -17.48 4.95 -53.40 -0.26 -17.75 16 20 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 21 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 23 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 24 Si 0.90 22.27 29.55 -169.99 -5.02 17.24 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 C 0.64 9.33 8.61 -86.74 -0.75 8.58 16 29 O -0.54 -10.23 17.77 5.08 0.09 -10.14 16 30 H 0.09 0.13 8.07 -51.93 -0.42 -0.29 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.23 0.27 8.06 -52.49 -0.42 -0.15 16 34 H 0.10 1.62 8.07 -51.93 -0.42 1.20 16 35 H 0.10 1.30 8.10 -51.93 -0.42 0.88 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.40 6.32 8.60 -40.82 -0.35 5.97 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.38 10.35 7.80 -40.82 -0.32 10.03 16 48 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 399.03 15.07 6.01 6.01 Total: -1.00 -36.52 399.03 -9.32 -45.84 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -7.78 Total: 13.64 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: -2.63 Total: 9.58 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -0.07 Total: -71.67 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: 0.18 Total: -20.65 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.52 -9.32 -45.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227720717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.980 kcal (2) G-P(sol) polarization free energy of solvation -36.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds