Wall clock time and date at job start Tue Mar 31 2020 21:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37367 * 125.82961 * 2 1 4 4 N 1.29399 * 108.82837 * 179.97438 * 3 2 1 5 5 N 1.40174 * 108.14107 * 359.97438 * 4 3 2 6 6 C 1.46499 * 126.35171 * 179.97438 * 5 4 3 7 7 C 1.52993 * 109.47052 * 270.02906 * 6 5 4 8 8 C 1.50703 * 109.46859 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00188 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99960 * 180.02562 * 8 7 6 11 11 C 1.46507 * 119.99971 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.46955 * 34.99585 * 11 10 8 13 13 C 1.53002 * 109.46688 * 274.99603 * 11 10 8 14 14 C 1.52997 * 109.46817 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47127 * 60.00361 * 14 13 11 16 16 C 1.52999 * 109.46626 * 299.99539 * 15 14 13 17 17 C 1.52996 * 109.47258 * 154.99970 * 11 10 8 18 18 H 1.09000 * 109.47380 * 59.99156 * 17 11 10 19 19 N 1.46510 * 109.46858 * 299.99700 * 17 11 10 20 20 C 1.36936 * 119.99911 * 154.99804 * 19 17 11 21 21 H 1.08004 * 119.99844 * 0.02562 * 20 19 17 22 22 C 1.38806 * 120.00080 * 179.97438 * 20 19 17 23 23 N 1.31619 * 119.99818 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00022 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47003 * 60.00806 * 24 22 20 26 26 H 1.48508 * 109.46880 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47042 * 300.00380 * 24 22 20 28 28 C 1.34805 * 125.83472 * 180.28659 * 2 1 3 29 29 O 1.21818 * 126.30653 * 0.04110 * 28 2 1 30 30 H 1.09004 * 109.47550 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47157 * 120.02512 * 1 2 3 32 32 H 1.09003 * 109.47468 * 240.02543 * 1 2 3 33 33 H 1.07997 * 125.58351 * 359.96334 * 3 2 1 34 34 H 1.09002 * 109.46914 * 150.02817 * 6 5 4 35 35 H 1.09002 * 109.46856 * 30.02835 * 6 5 4 36 36 H 1.09002 * 109.47333 * 60.00168 * 7 6 5 37 37 H 1.08994 * 109.47578 * 299.99760 * 7 6 5 38 38 H 0.96998 * 120.00021 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.47070 * 60.00104 * 13 11 10 40 40 H 1.08996 * 109.47407 * 299.99704 * 13 11 10 41 41 H 1.09001 * 109.47502 * 300.00518 * 14 13 11 42 42 H 1.09001 * 109.47289 * 180.02562 * 14 13 11 43 43 H 1.08993 * 109.46955 * 60.00011 * 15 14 13 44 44 H 1.09000 * 109.47050 * 179.97438 * 15 14 13 45 45 H 1.09002 * 109.46719 * 180.02562 * 16 15 14 46 46 H 1.08993 * 109.47839 * 299.99931 * 16 15 14 47 47 H 0.96994 * 119.99768 * 334.99990 * 19 17 11 48 48 H 0.97010 * 119.99788 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5065 0.7354 0.0005 5 7 3.5344 -0.6661 0.0015 6 6 4.7313 -1.5108 0.0019 7 6 5.1481 -1.8053 -1.4405 8 6 6.3797 -2.6737 -1.4401 9 8 6.8751 -3.0231 -0.3896 10 7 6.9308 -3.0621 -2.6071 11 6 8.1278 -3.9068 -2.6067 12 1 8.0845 -4.5979 -1.7650 13 6 9.3730 -3.0267 -2.4805 14 6 10.6230 -3.9088 -2.4795 15 6 10.6891 -4.7013 -3.7866 16 6 9.4439 -5.5814 -3.9128 17 6 8.1936 -4.6988 -3.9141 18 1 8.2368 -4.0077 -4.7559 19 7 7.0012 -5.5415 -4.0350 20 6 6.5636 -5.9353 -5.2713 21 1 7.0977 -5.6250 -6.1573 22 6 5.4343 -6.7342 -5.3859 23 7 4.7838 -7.1128 -4.3061 24 14 4.8378 -7.2720 -7.0725 25 1 5.9025 -8.0573 -7.7468 26 1 3.6221 -8.1118 -6.9229 27 1 4.5142 -6.0741 -7.8882 28 6 2.2542 -1.0929 -0.0055 29 8 1.8806 -2.2523 -0.0120 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3633 -0.5142 -0.8897 32 1 -0.3634 -0.5134 0.8902 33 1 1.9248 2.1374 -0.0006 34 1 4.5149 -2.4473 0.5160 35 1 5.5413 -0.9930 0.5156 36 1 5.3645 -0.8688 -1.9546 37 1 4.3382 -2.3231 -1.9542 38 1 6.5345 -2.7830 -3.4473 39 1 9.3261 -2.4624 -1.5491 40 1 9.4163 -2.3356 -3.3222 41 1 10.5795 -4.5998 -1.6375 42 1 11.5101 -3.2819 -2.3891 43 1 10.7326 -4.0105 -4.6285 44 1 11.5799 -5.3295 -3.7861 45 1 9.4912 -6.1464 -4.8438 46 1 9.4004 -6.2723 -3.0709 47 1 6.5219 -5.8205 -3.2393 48 1 3.9943 -7.6708 -4.3862 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227720717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:13 Heat of formation + Delta-G solvation = -17.380645 kcal Electronic energy + Delta-G solvation = -29601.449120 eV Core-core repulsion = 25499.222978 eV Total energy + Delta-G solvation = -4102.226143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.40812 -41.14662 -39.31289 -38.44535 -36.67620 -35.82398 -35.11733 -33.81119 -33.00772 -31.33229 -30.34709 -29.29643 -28.25078 -25.93464 -25.54742 -23.63158 -23.06827 -22.49599 -22.11031 -21.39655 -20.72188 -19.19169 -18.80220 -18.01773 -17.67057 -17.34625 -17.13518 -16.70998 -16.64343 -16.31668 -15.79413 -15.47218 -15.46559 -14.98153 -14.87660 -14.62304 -14.48328 -14.36387 -14.03101 -13.89435 -13.56065 -13.51120 -13.47446 -13.24297 -12.93218 -12.91076 -12.78867 -12.42009 -12.28185 -12.16726 -12.07241 -12.01060 -11.65024 -11.43930 -11.39652 -11.20113 -11.09886 -10.98262 -10.73487 -9.95670 -9.67806 -9.01176 -7.92652 -5.22020 0.70807 1.09777 1.45836 1.48490 1.53978 1.54717 1.59692 2.13547 2.39168 2.55551 3.40593 3.44362 3.62510 3.69760 3.79514 3.88537 3.97930 4.11869 4.15596 4.26539 4.28501 4.32823 4.33066 4.44351 4.48003 4.51236 4.59603 4.63940 4.68669 4.70441 4.79747 4.95650 4.96115 5.02085 5.08604 5.17659 5.25033 5.30102 5.31521 5.47020 5.51752 5.56190 5.67995 5.71009 6.26495 6.55431 6.62865 6.93091 7.21947 7.33147 8.07876 8.31575 9.30189 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009247 B = 0.003225 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.255324 B = 8679.112093 C =11179.519783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.558 5.558 3 C 0.280 3.720 4 N -0.312 5.312 5 N -0.457 5.457 6 C 0.184 3.816 7 C -0.144 4.144 8 C 0.521 3.479 9 O -0.581 6.581 10 N -0.703 5.703 11 C 0.147 3.853 12 H 0.052 0.948 13 C -0.113 4.113 14 C -0.111 4.111 15 C -0.109 4.109 16 C -0.128 4.128 17 C 0.171 3.829 18 H 0.059 0.941 19 N -0.733 5.733 20 C -0.233 4.233 21 H 0.080 0.920 22 C -0.075 4.075 23 N -0.971 5.971 24 Si 0.970 3.030 25 H -0.279 1.279 26 H -0.303 1.303 27 H -0.275 1.275 28 C 0.619 3.381 29 O -0.604 6.604 30 H 0.147 0.853 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.294 0.706 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.083 0.917 38 H 0.408 0.592 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.049 0.951 46 H 0.039 0.961 47 H 0.367 0.633 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.782 23.745 6.497 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.286 5.286 3 C -0.017 4.017 4 N -0.134 5.134 5 N -0.277 5.277 6 C 0.063 3.937 7 C -0.185 4.185 8 C 0.308 3.692 9 O -0.462 6.462 10 N -0.352 5.352 11 C 0.042 3.958 12 H 0.070 0.930 13 C -0.152 4.152 14 C -0.149 4.149 15 C -0.147 4.147 16 C -0.169 4.169 17 C 0.063 3.937 18 H 0.077 0.923 19 N -0.372 5.372 20 C -0.364 4.364 21 H 0.098 0.902 22 C -0.268 4.268 23 N -0.622 5.622 24 Si 0.799 3.201 25 H -0.205 1.205 26 H -0.230 1.230 27 H -0.201 1.201 28 C 0.318 3.682 29 O -0.481 6.481 30 H 0.165 0.835 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.309 0.691 34 H 0.094 0.906 35 H 0.131 0.869 36 H 0.143 0.857 37 H 0.102 0.898 38 H 0.243 0.757 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.198 0.802 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.291 22.925 7.035 23.982 hybrid contribution -1.853 -1.549 -0.850 2.561 sum -1.562 21.376 6.185 22.307 Atomic orbital electron populations 1.22165 0.71855 1.07339 1.03361 1.46178 1.10193 1.05938 1.66254 1.27255 0.84347 0.96031 0.94051 1.77009 1.20379 0.90047 1.25936 1.49014 1.05631 1.04362 1.68671 1.20975 0.83745 0.92978 0.96041 1.21886 0.95740 1.01561 0.99287 1.20545 0.84768 0.80279 0.83607 1.90663 1.64978 1.58374 1.32199 1.45903 1.29489 1.51207 1.08607 1.21192 0.84868 0.91801 0.97982 0.93004 1.21800 0.93072 0.97969 1.02390 1.21483 0.97413 0.98392 0.97593 1.21515 0.96717 0.98429 0.98078 1.22100 0.95607 0.98599 1.00613 1.20703 0.86862 0.91468 0.94694 0.92266 1.42599 1.29662 1.59832 1.05071 1.19560 1.06574 1.23777 0.86537 0.90168 1.25525 0.99245 1.01907 1.00078 1.69852 1.21340 1.42120 1.28897 0.85269 0.76986 0.77894 0.79946 1.20472 1.22970 1.20084 1.17260 0.83149 0.85563 0.82205 1.91087 1.78641 1.17796 1.60534 0.83466 0.91419 0.91065 0.69059 0.90564 0.86867 0.85665 0.89825 0.75658 0.92126 0.90160 0.92934 0.89305 0.90863 0.90896 0.93235 0.94239 0.80175 0.94417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 11.08 127.77 1.42 2.25 16 2 N -0.56 -9.64 3.14 -683.69 -2.15 -11.78 16 3 C 0.28 2.96 12.61 179.82 2.27 5.23 16 4 N -0.31 -6.12 12.53 -59.41 -0.74 -6.87 16 5 N -0.46 -12.43 3.63 -478.02 -1.73 -14.16 16 6 C 0.18 5.35 5.68 86.38 0.49 5.84 16 7 C -0.14 -4.11 6.02 29.85 0.18 -3.93 16 8 C 0.52 17.85 7.79 87.66 0.68 18.53 16 9 O -0.58 -23.28 15.65 -3.04 -0.05 -23.33 16 10 N -0.70 -23.43 4.91 -442.52 -2.17 -25.60 16 11 C 0.15 5.06 1.98 44.99 0.09 5.15 16 12 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 13 C -0.11 -3.02 5.49 30.59 0.17 -2.85 16 14 C -0.11 -2.62 5.92 30.60 0.18 -2.44 16 15 C -0.11 -2.73 5.92 30.60 0.18 -2.55 16 16 C -0.13 -4.45 5.50 30.61 0.17 -4.28 16 17 C 0.17 6.50 2.30 45.00 0.10 6.60 16 18 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 19 N -0.73 -36.44 4.95 -322.85 -1.60 -38.04 16 20 C -0.23 -12.62 9.93 84.03 0.83 -11.78 16 21 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 22 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 23 N -0.97 -61.22 13.06 21.65 0.28 -60.94 16 24 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 25 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 26 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 27 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 28 C 0.62 18.59 8.61 178.99 1.54 20.13 16 29 O -0.60 -24.41 17.77 -4.73 -0.08 -24.50 16 30 H 0.15 -0.32 8.07 -2.38 -0.02 -0.34 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.29 -1.24 8.06 -2.91 -0.02 -1.26 16 34 H 0.08 2.61 8.07 -2.39 -0.02 2.59 16 35 H 0.11 2.97 8.10 -2.39 -0.02 2.95 16 36 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.41 12.80 8.60 -92.71 -0.80 12.00 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 47 H 0.37 20.74 7.80 -92.71 -0.72 20.01 16 48 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -86.03 399.03 2.01 -84.03 By element: Atomic # 1 Polarization: 41.23 SS G_CDS: -0.55 Total: 40.68 kcal Atomic # 6 Polarization: 23.24 SS G_CDS: 8.77 Total: 32.01 kcal Atomic # 7 Polarization: -149.27 SS G_CDS: -8.11 Total: -157.38 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -0.13 Total: -47.83 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -86.03 2.01 -84.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227720717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.646 kcal (2) G-P(sol) polarization free energy of solvation -86.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds