Wall clock time and date at job start Tue Mar 31 2020 20:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45198 * 109.47715 * 2 1 4 4 C 1.34228 * 117.00636 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99680 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00263 * 180.02562 * 4 3 2 7 7 C 1.50697 * 109.47327 * 180.02562 * 6 4 3 8 8 C 1.38260 * 119.56185 * 124.99458 * 7 6 4 9 9 C 1.38527 * 119.22011 * 179.97438 * 8 7 6 10 10 C 1.39136 * 118.37993 * 0.02562 * 9 8 7 11 11 O 1.35914 * 120.47638 * 179.97438 * 10 9 8 12 12 C 1.42901 * 116.99686 * 5.67295 * 11 10 9 13 13 H 1.09004 * 109.47197 * 33.90622 * 12 11 10 14 14 C 1.50698 * 109.47436 * 273.89886 * 12 11 10 15 15 H 1.08001 * 120.00108 * 120.00068 * 14 12 11 16 16 C 1.37878 * 119.99857 * 300.00495 * 14 12 11 17 17 N 1.31511 * 119.99975 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00013 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47369 * 59.99358 * 18 16 14 20 20 H 1.48497 * 109.47402 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47001 * 299.99985 * 18 16 14 22 22 C 1.53003 * 109.46825 * 153.89724 * 12 11 10 23 23 N 1.46897 * 109.47454 * 294.48417 * 22 12 11 24 24 C 1.46898 * 109.47043 * 64.87279 * 23 22 12 25 25 C 1.46896 * 109.47192 * 184.87114 * 23 22 12 26 26 C 1.46900 * 109.47097 * 304.87105 * 23 22 12 27 27 C 1.38703 * 119.05178 * 359.97438 * 10 9 8 28 28 N 1.31845 * 120.68463 * 359.74697 * 27 10 9 29 29 H 1.08995 * 109.47065 * 300.00140 * 1 2 3 30 30 H 1.09002 * 109.46981 * 59.99457 * 1 2 3 31 31 H 1.08992 * 109.47244 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47376 * 240.00269 * 2 1 3 33 33 H 1.09002 * 109.46981 * 120.00543 * 2 1 3 34 34 H 1.09008 * 109.47077 * 300.00484 * 6 4 3 35 35 H 1.08997 * 109.47185 * 60.00299 * 6 4 3 36 36 H 1.07999 * 120.38719 * 359.96164 * 8 7 6 37 37 H 1.08006 * 120.80955 * 180.02562 * 9 8 7 38 38 H 0.97006 * 119.99681 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.46886 * 54.48498 * 22 12 11 40 40 H 1.09004 * 109.47045 * 174.48427 * 22 12 11 41 41 H 1.09004 * 109.47228 * 52.38642 * 24 23 22 42 42 H 1.09004 * 109.47606 * 172.39159 * 24 23 22 43 43 H 1.09004 * 109.47219 * 292.39230 * 24 23 22 44 44 H 1.09000 * 109.47423 * 60.00306 * 25 23 22 45 45 H 1.09002 * 109.47555 * 180.02562 * 25 23 22 46 46 H 1.09005 * 109.47357 * 299.99815 * 25 23 22 47 47 H 1.09003 * 109.47145 * 60.00116 * 26 23 22 48 48 H 1.09002 * 109.46777 * 179.97438 * 26 23 22 49 49 H 1.08996 * 109.46828 * 299.99810 * 26 23 22 50 50 H 1.08004 * 119.65908 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9373 0.0012 7 6 5.4258 2.8584 0.0010 8 6 6.1430 3.5119 -0.9839 9 6 7.5261 3.4351 -0.9769 10 6 8.1424 2.6971 0.0287 11 8 9.4967 2.5929 0.0760 12 6 10.2403 3.3687 -0.8659 13 1 9.7220 4.3096 -1.0514 14 6 10.3689 2.6029 -2.1574 15 1 9.9715 3.0166 -3.0725 16 6 10.9940 1.3740 -2.1709 17 7 11.4783 0.8704 -1.0567 18 14 11.1540 0.4250 -3.7719 19 1 11.9271 1.2315 -4.7502 20 1 11.8595 -0.8570 -3.5190 21 1 9.8020 0.1459 -4.3191 22 6 11.6335 3.6565 -0.3027 23 7 11.5145 4.5147 0.8836 24 6 10.8060 3.7872 1.9451 25 6 12.8550 4.8865 1.3555 26 6 10.7634 5.7285 0.5365 27 6 7.3550 2.0692 0.9824 28 7 6.0411 2.1716 0.9434 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.5852 3.4697 -0.8888 35 1 3.5847 3.4691 0.8912 36 1 5.6309 4.0754 -1.7498 37 1 8.1118 3.9359 -1.7337 38 1 11.9184 0.0060 -1.0663 39 1 12.1143 2.7184 -0.0257 40 1 12.2335 4.1630 -1.0588 41 1 11.2875 2.8230 2.1085 42 1 10.8355 4.3690 2.8664 43 1 9.7691 3.6297 1.6479 44 1 13.3807 5.4263 0.5679 45 1 12.7667 5.5229 2.2360 46 1 13.4123 3.9858 1.6131 47 1 9.7687 5.4527 0.1863 48 1 10.6747 6.3651 1.4169 49 1 11.2892 6.2683 -0.2511 50 1 7.8231 1.4934 1.7672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227803310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:16 Heat of formation + Delta-G solvation = 19.557900 kcal Electronic energy + Delta-G solvation = -30511.216897 eV Core-core repulsion = 26430.069951 eV Total energy + Delta-G solvation = -4081.146947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.196 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.43391 -41.50720 -40.79126 -38.86822 -37.26701 -34.90221 -33.48201 -32.84565 -32.38627 -31.70082 -30.45942 -30.27733 -28.67516 -27.89522 -25.22809 -24.72246 -24.23836 -23.33469 -22.39305 -21.40635 -19.38798 -19.03835 -18.65320 -18.48211 -18.24804 -17.68403 -17.51383 -17.15871 -17.03575 -16.42413 -16.15966 -15.62033 -15.30365 -15.20785 -15.00463 -14.74065 -14.50593 -14.43104 -14.22935 -14.15171 -14.03927 -13.91636 -13.80770 -13.65030 -13.59085 -13.51069 -13.25991 -12.91595 -12.72036 -12.54419 -12.44061 -12.36964 -12.18150 -11.83407 -11.30196 -11.28684 -11.15194 -10.97159 -10.40568 -10.30100 -10.13793 -8.87718 -7.84732 -6.07621 0.25177 0.41531 0.59871 1.55746 1.91114 2.07031 2.17436 2.20497 2.23923 2.27669 2.31747 2.59359 2.95823 3.08295 3.09924 3.14532 3.34969 3.44434 3.46753 3.57962 3.61776 3.66476 3.70739 3.76187 3.86790 4.01361 4.04955 4.05439 4.12376 4.17070 4.19342 4.23387 4.27360 4.35043 4.45777 4.47217 4.58249 4.67490 4.88738 4.94493 4.95643 5.05143 5.15612 5.34389 5.47202 5.68382 5.77319 5.99833 6.16822 6.68158 7.09204 7.09663 7.32323 7.78344 9.17734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.363 6.363 4 C 0.461 3.539 5 O -0.486 6.486 6 C -0.052 4.052 7 C 0.073 3.927 8 C -0.120 4.120 9 C -0.162 4.162 10 C 0.108 3.892 11 O -0.298 6.298 12 C 0.192 3.808 13 H 0.047 0.953 14 C -0.569 4.569 15 H 0.078 0.922 16 C 0.093 3.907 17 N -0.859 5.859 18 Si 0.904 3.096 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.001 4.001 23 N -0.272 5.272 24 C -0.044 4.044 25 C -0.041 4.041 26 C -0.047 4.047 27 C 0.062 3.938 28 N -0.424 5.424 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.281 0.719 39 H 0.160 0.840 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.100 0.900 43 H 0.132 0.868 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.117 0.883 47 H 0.117 0.883 48 H 0.110 0.890 49 H 0.116 0.884 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 15.097 8.425 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.281 6.281 4 C 0.302 3.698 5 O -0.371 6.371 6 C -0.090 4.090 7 C -0.065 4.065 8 C -0.140 4.140 9 C -0.188 4.188 10 C 0.059 3.941 11 O -0.211 6.211 12 C 0.137 3.863 13 H 0.065 0.935 14 C -0.605 4.605 15 H 0.096 0.904 16 C -0.117 4.117 17 N -0.492 5.492 18 Si 0.729 3.271 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.192 1.192 22 C -0.120 4.120 23 N 0.069 4.931 24 C -0.185 4.185 25 C -0.182 4.182 26 C -0.189 4.189 27 C -0.098 4.098 28 N -0.133 5.133 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.151 0.849 37 H 0.162 0.838 38 H 0.091 0.909 39 H 0.178 0.822 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.118 0.882 43 H 0.150 0.850 44 H 0.132 0.868 45 H 0.128 0.872 46 H 0.135 0.865 47 H 0.135 0.865 48 H 0.129 0.871 49 H 0.134 0.866 50 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.388 14.078 9.269 17.193 hybrid contribution 0.659 -0.451 -1.787 1.958 sum 4.048 13.627 7.482 16.064 Atomic orbital electron populations 1.21811 0.92522 1.03112 1.03521 1.23020 0.95328 0.80034 1.02713 1.86472 1.24567 1.32623 1.84470 1.23383 0.80524 0.92587 0.73261 1.90738 1.60201 1.42742 1.43384 1.20072 0.90311 0.92125 1.06517 1.20197 0.94184 0.98264 0.93806 1.21728 0.94176 0.99802 0.98267 1.21730 0.95010 1.02579 0.99490 1.20100 0.85135 0.94460 0.94445 1.86305 1.12738 1.65932 1.56075 1.20366 0.85375 0.91934 0.88587 0.93537 1.21162 1.41927 1.04593 0.92818 0.90381 1.25024 0.92345 0.96705 0.97666 1.69586 1.33942 1.19174 1.26511 0.86374 0.79630 0.79345 0.81739 1.19293 1.20243 1.19249 1.24881 1.04737 0.97721 0.84639 1.46387 1.14105 1.15315 1.17298 1.24355 1.03730 1.00413 0.89981 1.24005 0.83091 1.06484 1.04656 1.24060 1.01463 0.87033 1.06317 1.22098 0.87958 1.00557 0.99177 1.67360 1.09615 1.12842 1.23439 0.91429 0.91458 0.90161 0.91269 0.91162 0.86423 0.86317 0.84880 0.83769 0.90894 0.82239 0.85862 0.86039 0.88189 0.85002 0.86831 0.87182 0.86454 0.86505 0.87097 0.86580 0.82572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.01 10.29 37.16 0.38 0.40 16 2 C 0.06 0.15 6.19 37.16 0.23 0.38 16 3 O -0.36 -1.30 10.22 -39.25 -0.40 -1.70 16 4 C 0.46 2.15 7.89 36.00 0.28 2.43 16 5 O -0.49 -4.20 15.09 -18.76 -0.28 -4.49 16 6 C -0.05 -0.06 6.21 -29.04 -0.18 -0.24 16 7 C 0.07 0.24 5.76 -82.58 -0.48 -0.23 16 8 C -0.12 -0.21 9.70 -39.47 -0.38 -0.60 16 9 C -0.16 -0.34 8.83 -39.14 -0.35 -0.69 16 10 C 0.11 0.30 6.05 -39.08 -0.24 0.06 16 11 O -0.30 -0.51 6.14 -19.47 -0.12 -0.63 16 12 C 0.19 0.03 1.35 -27.88 -0.04 -0.01 16 13 H 0.05 -0.11 4.04 -51.93 -0.21 -0.32 16 14 C -0.57 -3.51 8.15 -34.44 -0.28 -3.79 16 15 H 0.08 0.56 7.81 -52.49 -0.41 0.15 16 16 C 0.09 0.80 5.24 -17.82 -0.09 0.70 16 17 N -0.86 -7.20 10.93 55.43 0.61 -6.60 16 18 Si 0.90 8.15 29.54 -169.99 -5.02 3.13 16 19 H -0.27 -2.40 7.11 56.52 0.40 -1.99 16 20 H -0.28 -2.80 7.11 56.52 0.40 -2.40 16 21 H -0.27 -2.85 7.11 56.52 0.40 -2.45 16 22 C 0.00 0.01 3.56 -3.82 -0.01 -0.01 16 23 N -0.27 2.76 0.05 -395.62 -0.02 2.75 16 24 C -0.04 0.39 7.21 60.06 0.43 0.83 16 25 C -0.04 0.52 8.00 60.06 0.48 1.00 16 26 C -0.05 0.54 7.53 60.06 0.45 0.99 16 27 C 0.06 0.24 11.14 -17.37 -0.19 0.05 16 28 N -0.42 -2.22 9.23 -9.35 -0.09 -2.31 16 29 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 30 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 32 H 0.07 0.19 8.13 -51.93 -0.42 -0.23 16 33 H 0.07 0.19 8.13 -51.93 -0.42 -0.23 16 34 H 0.12 -0.23 7.87 -51.92 -0.41 -0.64 16 35 H 0.12 -0.11 8.14 -51.93 -0.42 -0.54 16 36 H 0.13 -0.13 7.94 -52.49 -0.42 -0.55 16 37 H 0.14 0.17 5.87 -52.48 -0.31 -0.14 16 38 H 0.28 2.61 8.31 -40.82 -0.34 2.27 16 39 H 0.16 -0.22 6.09 -51.93 -0.32 -0.54 16 40 H 0.12 -0.68 8.09 -51.93 -0.42 -1.10 16 41 H 0.12 -0.91 7.97 -51.93 -0.41 -1.32 16 42 H 0.10 -1.18 8.04 -51.93 -0.42 -1.60 16 43 H 0.13 -0.84 4.98 -51.93 -0.26 -1.10 16 44 H 0.11 -1.52 8.11 -51.93 -0.42 -1.94 16 45 H 0.11 -1.60 8.09 -51.93 -0.42 -2.02 16 46 H 0.12 -1.41 8.14 -51.93 -0.42 -1.84 16 47 H 0.12 -1.13 5.89 -51.93 -0.31 -1.44 16 48 H 0.11 -1.52 8.14 -51.93 -0.42 -1.94 16 49 H 0.12 -1.46 8.14 -51.93 -0.42 -1.88 16 50 H 0.16 0.40 8.06 -52.48 -0.42 -0.02 16 LS Contribution 396.06 15.07 5.97 5.97 Total: 0.00 -20.39 396.06 -7.42 -27.81 By element: Atomic # 1 Polarization: -17.11 SS G_CDS: -8.09 Total: -25.20 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 0.02 Total: 1.27 kcal Atomic # 7 Polarization: -6.66 SS G_CDS: 0.50 Total: -6.16 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.80 Total: -6.82 kcal Atomic # 14 Polarization: 8.15 SS G_CDS: -5.02 Total: 3.13 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -20.39 -7.42 -27.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227803310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.370 kcal (2) G-P(sol) polarization free energy of solvation -20.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds