Wall clock time and date at job start Tue Mar 31 2020 20:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45198 * 109.47715 * 2 1 4 4 C 1.34228 * 117.00636 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99680 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00263 * 180.02562 * 4 3 2 7 7 C 1.50697 * 109.47327 * 180.02562 * 6 4 3 8 8 C 1.38260 * 119.56185 * 124.99458 * 7 6 4 9 9 C 1.38527 * 119.22011 * 179.97438 * 8 7 6 10 10 C 1.39136 * 118.37993 * 0.02562 * 9 8 7 11 11 O 1.35914 * 120.47638 * 179.97438 * 10 9 8 12 12 C 1.42901 * 116.99686 * 5.67295 * 11 10 9 13 13 H 1.09004 * 109.47197 * 33.90622 * 12 11 10 14 14 C 1.50698 * 109.47436 * 273.89886 * 12 11 10 15 15 H 1.08001 * 120.00108 * 120.00068 * 14 12 11 16 16 C 1.37878 * 119.99857 * 300.00495 * 14 12 11 17 17 N 1.31511 * 119.99975 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00013 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47369 * 59.99358 * 18 16 14 20 20 H 1.48497 * 109.47402 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47001 * 299.99985 * 18 16 14 22 22 C 1.53003 * 109.46825 * 153.89724 * 12 11 10 23 23 N 1.46897 * 109.47454 * 294.48417 * 22 12 11 24 24 C 1.46898 * 109.47043 * 64.87279 * 23 22 12 25 25 C 1.46896 * 109.47192 * 184.87114 * 23 22 12 26 26 C 1.46900 * 109.47097 * 304.87105 * 23 22 12 27 27 C 1.38703 * 119.05178 * 359.97438 * 10 9 8 28 28 N 1.31845 * 120.68463 * 359.74697 * 27 10 9 29 29 H 1.08995 * 109.47065 * 300.00140 * 1 2 3 30 30 H 1.09002 * 109.46981 * 59.99457 * 1 2 3 31 31 H 1.08992 * 109.47244 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47376 * 240.00269 * 2 1 3 33 33 H 1.09002 * 109.46981 * 120.00543 * 2 1 3 34 34 H 1.09008 * 109.47077 * 300.00484 * 6 4 3 35 35 H 1.08997 * 109.47185 * 60.00299 * 6 4 3 36 36 H 1.07999 * 120.38719 * 359.96164 * 8 7 6 37 37 H 1.08006 * 120.80955 * 180.02562 * 9 8 7 38 38 H 0.97006 * 119.99681 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.46886 * 54.48498 * 22 12 11 40 40 H 1.09004 * 109.47045 * 174.48427 * 22 12 11 41 41 H 1.09004 * 109.47228 * 52.38642 * 24 23 22 42 42 H 1.09004 * 109.47606 * 172.39159 * 24 23 22 43 43 H 1.09004 * 109.47219 * 292.39230 * 24 23 22 44 44 H 1.09000 * 109.47423 * 60.00306 * 25 23 22 45 45 H 1.09002 * 109.47555 * 180.02562 * 25 23 22 46 46 H 1.09005 * 109.47357 * 299.99815 * 25 23 22 47 47 H 1.09003 * 109.47145 * 60.00116 * 26 23 22 48 48 H 1.09002 * 109.46777 * 179.97438 * 26 23 22 49 49 H 1.08996 * 109.46828 * 299.99810 * 26 23 22 50 50 H 1.08004 * 119.65908 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9373 0.0012 7 6 5.4258 2.8584 0.0010 8 6 6.1430 3.5119 -0.9839 9 6 7.5261 3.4351 -0.9769 10 6 8.1424 2.6971 0.0287 11 8 9.4967 2.5929 0.0760 12 6 10.2403 3.3687 -0.8659 13 1 9.7220 4.3096 -1.0514 14 6 10.3689 2.6029 -2.1574 15 1 9.9715 3.0166 -3.0725 16 6 10.9940 1.3740 -2.1709 17 7 11.4783 0.8704 -1.0567 18 14 11.1540 0.4250 -3.7719 19 1 11.9271 1.2315 -4.7502 20 1 11.8595 -0.8570 -3.5190 21 1 9.8020 0.1459 -4.3191 22 6 11.6335 3.6565 -0.3027 23 7 11.5145 4.5147 0.8836 24 6 10.8060 3.7872 1.9451 25 6 12.8550 4.8865 1.3555 26 6 10.7634 5.7285 0.5365 27 6 7.3550 2.0692 0.9824 28 7 6.0411 2.1716 0.9434 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.5852 3.4697 -0.8888 35 1 3.5847 3.4691 0.8912 36 1 5.6309 4.0754 -1.7498 37 1 8.1118 3.9359 -1.7337 38 1 11.9184 0.0060 -1.0663 39 1 12.1143 2.7184 -0.0257 40 1 12.2335 4.1630 -1.0588 41 1 11.2875 2.8230 2.1085 42 1 10.8355 4.3690 2.8664 43 1 9.7691 3.6297 1.6479 44 1 13.3807 5.4263 0.5679 45 1 12.7667 5.5229 2.2360 46 1 13.4123 3.9858 1.6131 47 1 9.7687 5.4527 0.1863 48 1 10.6747 6.3651 1.4169 49 1 11.2892 6.2683 -0.2511 50 1 7.8231 1.4934 1.7672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227803310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:14 Heat of formation + Delta-G solvation = 13.616912 kcal Electronic energy + Delta-G solvation = -30511.474518 eV Core-core repulsion = 26430.069951 eV Total energy + Delta-G solvation = -4081.404567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.196 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.82408 -41.73052 -40.99322 -38.96295 -37.61669 -35.28544 -33.69191 -33.01572 -32.50952 -31.67838 -29.56242 -29.46453 -28.76574 -27.92764 -25.29786 -24.52316 -24.38641 -23.33719 -22.42028 -21.60264 -19.57247 -18.83281 -18.69622 -18.09968 -17.80172 -17.66990 -17.62032 -17.26739 -17.15913 -16.69142 -16.42106 -15.78756 -15.41114 -15.20811 -14.71348 -14.61761 -14.43228 -14.29704 -13.96188 -13.89044 -13.63141 -13.57361 -13.30084 -13.28313 -13.24271 -13.17854 -13.12550 -12.99343 -12.93290 -12.81867 -12.77333 -12.60975 -12.52076 -12.42708 -11.55493 -11.54718 -11.41348 -11.31188 -10.90337 -10.57452 -10.39586 -9.07161 -8.44098 -6.60937 0.24352 0.40890 1.00440 1.23452 1.29832 1.39429 1.46864 1.71495 2.23261 2.36235 2.82870 2.90053 3.05520 3.11274 3.23146 3.35927 3.75715 3.85336 3.88280 3.96276 4.01081 4.06532 4.08893 4.17840 4.23370 4.26468 4.30989 4.32313 4.34416 4.40823 4.48718 4.53896 4.59353 4.61679 4.69083 4.76007 4.80953 4.82286 4.87429 4.89930 4.97527 5.12344 5.13826 5.18781 5.34019 5.46388 5.52356 5.62611 5.72985 6.34687 6.72815 6.77775 7.12597 7.22811 8.53606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 O -0.361 6.361 4 C 0.459 3.541 5 O -0.535 6.535 6 C -0.048 4.048 7 C 0.056 3.944 8 C -0.115 4.115 9 C -0.167 4.167 10 C 0.106 3.894 11 O -0.297 6.297 12 C 0.186 3.814 13 H 0.078 0.922 14 C -0.567 4.567 15 H 0.064 0.936 16 C 0.073 3.927 17 N -0.865 5.865 18 Si 0.913 3.087 19 H -0.265 1.265 20 H -0.297 1.297 21 H -0.295 1.295 22 C 0.016 3.984 23 N -0.259 5.259 24 C -0.043 4.043 25 C -0.043 4.043 26 C -0.053 4.053 27 C 0.042 3.958 28 N -0.454 5.454 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.154 0.846 35 H 0.142 0.858 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.268 0.732 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.101 0.899 42 H 0.138 0.862 43 H 0.106 0.894 44 H 0.127 0.873 45 H 0.140 0.860 46 H 0.108 0.892 47 H 0.097 0.903 48 H 0.142 0.858 49 H 0.133 0.867 50 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.239 18.740 9.292 21.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.018 4.018 3 O -0.278 6.278 4 C 0.303 3.697 5 O -0.424 6.424 6 C -0.086 4.086 7 C -0.082 4.082 8 C -0.135 4.135 9 C -0.193 4.193 10 C 0.057 3.943 11 O -0.209 6.209 12 C 0.132 3.868 13 H 0.095 0.905 14 C -0.604 4.604 15 H 0.083 0.917 16 C -0.135 4.135 17 N -0.500 5.500 18 Si 0.742 3.258 19 H -0.190 1.190 20 H -0.223 1.223 21 H -0.222 1.222 22 C -0.105 4.105 23 N 0.083 4.917 24 C -0.185 4.185 25 C -0.183 4.183 26 C -0.194 4.194 27 C -0.117 4.117 28 N -0.163 5.163 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.172 0.828 35 H 0.160 0.840 36 H 0.183 0.817 37 H 0.172 0.828 38 H 0.078 0.922 39 H 0.149 0.851 40 H 0.158 0.842 41 H 0.120 0.880 42 H 0.156 0.844 43 H 0.124 0.876 44 H 0.145 0.855 45 H 0.158 0.842 46 H 0.127 0.873 47 H 0.116 0.884 48 H 0.161 0.839 49 H 0.151 0.849 50 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.208 17.749 10.136 20.690 hybrid contribution 0.638 -1.538 -2.077 2.662 sum 3.845 16.211 8.060 18.508 Atomic orbital electron populations 1.21809 0.90312 1.04190 1.03923 1.23180 0.97059 0.79626 1.01967 1.86488 1.24188 1.33135 1.84030 1.24171 0.80399 0.93534 0.71593 1.90721 1.61186 1.44587 1.45898 1.20295 0.88790 0.90191 1.09287 1.20635 0.95398 0.98264 0.93867 1.22067 0.94059 0.99184 0.98184 1.21921 0.95555 1.02477 0.99385 1.20118 0.85565 0.94294 0.94353 1.86347 1.12373 1.66388 1.55831 1.20511 0.87804 0.91921 0.86611 0.90505 1.21471 1.39571 1.04258 0.95138 0.91739 1.25124 0.93923 0.97723 0.96723 1.69674 1.35746 1.18687 1.25875 0.86321 0.77597 0.78853 0.82998 1.18955 1.22294 1.22151 1.24137 1.00953 0.98140 0.87237 1.46000 1.15872 1.14924 1.14857 1.24279 1.01869 1.00719 0.91596 1.24211 0.81101 1.06728 1.06284 1.24274 1.00283 0.86313 1.08518 1.22135 0.88095 1.01491 1.00019 1.67327 1.10222 1.13859 1.24894 0.90985 0.90997 0.88778 0.92062 0.92012 0.82801 0.84041 0.81712 0.82757 0.92234 0.85141 0.84223 0.88008 0.84412 0.87558 0.85450 0.84172 0.87325 0.88439 0.83930 0.84885 0.82741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.07 10.29 71.98 0.74 0.81 16 2 C 0.06 0.32 6.19 71.98 0.45 0.76 16 3 O -0.36 -2.69 10.22 -51.40 -0.53 -3.22 16 4 C 0.46 4.58 7.89 71.23 0.56 5.14 16 5 O -0.54 -10.37 15.09 21.95 0.33 -10.04 16 6 C -0.05 -0.06 6.21 29.10 0.18 0.12 16 7 C 0.06 0.38 5.76 42.56 0.25 0.62 16 8 C -0.12 -0.31 9.70 22.34 0.22 -0.10 16 9 C -0.17 -0.68 8.83 22.55 0.20 -0.49 16 10 C 0.11 0.69 6.05 22.60 0.14 0.83 16 11 O -0.30 -1.34 6.14 -92.58 -0.57 -1.91 16 12 C 0.19 0.06 1.35 29.85 0.04 0.10 16 13 H 0.08 -0.45 4.04 -2.38 -0.01 -0.46 16 14 C -0.57 -7.54 8.15 25.60 0.21 -7.33 16 15 H 0.06 0.99 7.81 -2.91 -0.02 0.96 16 16 C 0.07 1.39 5.24 84.66 0.44 1.83 16 17 N -0.86 -16.52 10.93 21.45 0.23 -16.29 16 18 Si 0.91 18.96 29.54 68.60 2.03 20.99 16 19 H -0.26 -5.19 7.11 99.48 0.71 -4.48 16 20 H -0.30 -6.98 7.11 99.48 0.71 -6.28 16 21 H -0.29 -7.29 7.11 99.48 0.71 -6.59 16 22 C 0.02 -0.15 3.56 86.30 0.31 0.16 16 23 N -0.26 5.67 0.05 ******* -0.07 5.60 16 24 C -0.04 0.80 7.21 127.69 0.92 1.72 16 25 C -0.04 1.19 8.00 127.69 1.02 2.22 16 26 C -0.05 1.37 7.53 127.69 0.96 2.33 16 27 C 0.04 0.41 11.14 84.80 0.94 1.35 16 28 N -0.45 -5.42 9.23 -183.48 -1.69 -7.12 16 29 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.06 0.43 8.13 -2.38 -0.02 0.41 16 33 H 0.06 0.44 8.13 -2.39 -0.02 0.42 16 34 H 0.15 -0.99 7.87 -2.38 -0.02 -1.00 16 35 H 0.14 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.17 -0.73 7.94 -2.91 -0.02 -0.75 16 37 H 0.15 0.23 5.87 -2.91 -0.02 0.21 16 38 H 0.27 5.77 8.31 -92.70 -0.77 5.00 16 39 H 0.13 -0.24 6.09 -2.39 -0.01 -0.26 16 40 H 0.14 -1.73 8.09 -2.39 -0.02 -1.75 16 41 H 0.10 -1.42 7.97 -2.38 -0.02 -1.44 16 42 H 0.14 -3.59 8.04 -2.39 -0.02 -3.61 16 43 H 0.11 -1.32 4.98 -2.39 -0.01 -1.33 16 44 H 0.13 -3.80 8.11 -2.39 -0.02 -3.82 16 45 H 0.14 -4.63 8.09 -2.39 -0.02 -4.65 16 46 H 0.11 -2.74 8.14 -2.38 -0.02 -2.76 16 47 H 0.10 -2.06 5.89 -2.39 -0.01 -2.08 16 48 H 0.14 -4.49 8.14 -2.39 -0.02 -4.51 16 49 H 0.13 -3.81 8.14 -2.39 -0.02 -3.83 16 50 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 Total: 0.00 -52.47 396.06 8.24 -44.23 By element: Atomic # 1 Polarization: -43.28 SS G_CDS: 0.92 Total: -42.35 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 7.58 Total: 10.09 kcal Atomic # 7 Polarization: -16.27 SS G_CDS: -1.53 Total: -17.80 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.76 Total: -15.16 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: 2.03 Total: 20.99 kcal Total: -52.47 8.24 -44.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227803310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.851 kcal (2) G-P(sol) polarization free energy of solvation -52.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds