Wall clock time and date at job start Tue Mar 31 2020 20:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45198 * 109.47097 * 2 1 4 4 C 1.34748 * 116.99713 * 180.02562 * 3 2 1 5 5 O 1.21497 * 120.00095 * 359.97438 * 4 3 2 6 6 C 1.47481 * 119.99843 * 180.02562 * 4 3 2 7 7 C 1.40322 * 120.49724 * 354.52564 * 6 4 3 8 8 C 1.36951 * 118.46475 * 180.02562 * 7 6 4 9 9 C 1.39163 * 119.40167 * 0.02562 * 8 7 6 10 10 O 1.35482 * 119.51571 * 179.97438 * 9 8 7 11 11 C 1.42895 * 117.00202 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47215 * 30.00807 * 11 10 9 13 13 C 1.50700 * 109.47491 * 270.00042 * 11 10 9 14 14 H 1.08004 * 119.99530 * 123.15996 * 13 11 10 15 15 C 1.37876 * 119.99985 * 303.16870 * 13 11 10 16 16 N 1.31510 * 120.00056 * 7.04383 * 15 13 11 17 17 Si 1.86804 * 119.99957 * 187.05000 * 15 13 11 18 18 H 1.48494 * 109.46987 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46695 * 299.99585 * 17 15 13 20 20 H 1.48496 * 109.47190 * 59.99594 * 17 15 13 21 21 C 1.53007 * 109.47129 * 150.00186 * 11 10 9 22 22 N 1.46901 * 109.47013 * 292.37003 * 21 11 10 23 23 C 1.46904 * 109.46967 * 63.46354 * 22 21 11 24 24 C 1.46902 * 109.46915 * 183.45717 * 22 21 11 25 25 C 1.46900 * 109.47472 * 303.46290 * 22 21 11 26 26 N 1.32434 * 120.97163 * 0.27106 * 9 8 7 27 27 C 1.31690 * 121.66446 * 359.43417 * 26 9 8 28 28 C 1.50709 * 119.75397 * 180.26500 * 27 26 9 29 29 H 1.08995 * 109.47327 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47204 * 300.00144 * 1 2 3 31 31 H 1.08997 * 109.47141 * 59.99749 * 1 2 3 32 32 H 1.08994 * 109.47429 * 239.99661 * 2 1 3 33 33 H 1.09005 * 109.47068 * 119.99901 * 2 1 3 34 34 H 1.07994 * 120.76829 * 0.04462 * 7 6 4 35 35 H 1.08000 * 120.29851 * 179.97438 * 8 7 6 36 36 H 0.97006 * 120.00318 * 355.03336 * 16 15 13 37 37 H 1.08993 * 109.47051 * 52.37082 * 21 11 10 38 38 H 1.09003 * 109.47054 * 172.37396 * 21 11 10 39 39 H 1.08996 * 109.47217 * 44.87421 * 23 22 21 40 40 H 1.08993 * 109.47344 * 164.88395 * 23 22 21 41 41 H 1.09000 * 109.46645 * 284.87934 * 23 22 21 42 42 H 1.09001 * 109.46851 * 60.00526 * 24 22 21 43 43 H 1.08998 * 109.46987 * 179.97438 * 24 22 21 44 44 H 1.08994 * 109.47224 * 300.00427 * 24 22 21 45 45 H 1.09000 * 109.47306 * 59.99160 * 25 22 21 46 46 H 1.08999 * 109.47193 * 180.02562 * 25 22 21 47 47 H 1.09007 * 109.46366 * 300.00040 * 25 22 21 48 48 H 1.08994 * 109.47155 * 262.90556 * 28 27 26 49 49 H 1.09000 * 109.47097 * 22.90466 * 28 27 26 50 50 H 1.09002 * 109.46804 * 142.90221 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3498 1.5454 -0.0005 5 8 4.0899 0.5819 -0.0005 6 6 3.9136 2.9082 0.0000 7 6 3.0735 4.0264 -0.1143 8 6 3.6414 5.2726 -0.1097 9 6 5.0229 5.3935 0.0065 10 8 5.5872 6.6252 0.0108 11 6 7.0095 6.6868 0.1333 12 1 7.4515 5.7951 -0.3114 13 6 7.3855 6.7604 1.5908 14 1 8.0464 6.0195 2.0160 15 6 6.8857 7.7734 2.3814 16 7 5.9750 8.5926 1.9027 17 14 7.5022 7.9824 4.1323 18 1 6.8132 9.1354 4.7654 19 1 7.2174 6.7484 4.9078 20 1 8.9663 8.2296 4.1154 21 6 7.5305 7.9297 -0.5911 22 7 7.3266 7.7748 -2.0377 23 6 5.8878 7.6940 -2.3234 24 6 7.9010 8.9304 -2.7396 25 6 7.9867 6.5453 -2.4965 26 7 5.7947 4.3220 0.1072 27 6 5.2909 3.1052 0.1127 28 6 6.2089 1.9163 0.2354 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0039 3.9071 -0.2035 35 1 3.0228 6.1536 -0.1964 36 1 5.7073 8.5302 0.9724 37 1 6.9896 8.8083 -0.2400 38 1 8.5940 8.0513 -0.3852 39 1 5.3613 8.4622 -1.7571 40 1 5.7198 7.8488 -3.3891 41 1 5.5150 6.7110 -2.0359 42 1 8.9685 8.9903 -2.5276 43 1 7.7501 8.8152 -3.8129 44 1 7.4112 9.8426 -2.3992 45 1 7.5605 5.6879 -1.9755 46 1 7.8357 6.4307 -3.5698 47 1 9.0542 6.6054 -2.2844 48 1 6.4145 1.5122 -0.7558 49 1 7.1437 2.2257 0.7027 50 1 5.7323 1.1510 0.8481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228813615.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:05 Heat of formation + Delta-G solvation = 21.838646 kcal Electronic energy + Delta-G solvation = -31140.498137 eV Core-core repulsion = 27059.450091 eV Total energy + Delta-G solvation = -4081.048046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.196 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.64179 -41.88915 -40.81500 -38.92710 -37.46426 -35.14717 -34.11982 -32.88810 -32.25605 -31.53659 -30.55232 -30.48130 -28.83366 -27.66613 -25.72891 -25.01444 -24.22590 -23.31426 -22.50049 -22.12573 -19.73045 -19.37003 -18.86903 -18.68948 -18.44094 -18.10374 -17.77724 -17.49188 -17.10321 -16.39892 -15.49969 -15.34610 -15.27338 -15.14544 -15.02087 -14.84696 -14.72149 -14.48564 -14.31413 -14.28889 -14.19202 -14.13946 -13.97267 -13.79211 -13.74029 -13.58884 -13.35829 -13.22692 -12.98949 -12.77943 -12.49973 -12.20554 -12.04136 -11.92729 -11.43521 -11.27819 -11.10897 -10.84978 -10.51810 -10.39652 -10.05973 -9.30715 -8.03872 -6.00126 -0.26480 0.06087 0.29336 1.66276 1.72250 1.95395 2.07093 2.10416 2.21161 2.32918 2.38164 2.50804 2.82576 2.98308 3.02036 3.12392 3.19829 3.25045 3.32691 3.42522 3.44742 3.58038 3.63434 3.64655 3.69895 3.79022 3.84306 3.90170 3.94619 4.01219 4.02511 4.05673 4.11244 4.34722 4.46056 4.62399 4.70019 4.80061 4.83590 4.84921 4.86548 5.00066 5.06335 5.12816 5.27708 5.43884 5.65518 5.96211 6.39046 6.74949 6.88141 6.94286 7.11728 7.77564 9.28668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.357 6.357 4 C 0.520 3.480 5 O -0.505 6.505 6 C -0.239 4.239 7 C 0.017 3.983 8 C -0.223 4.223 9 C 0.381 3.619 10 O -0.311 6.311 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.617 4.617 14 H 0.075 0.925 15 C 0.046 3.954 16 N -0.862 5.862 17 Si 1.060 2.940 18 H -0.274 1.274 19 H -0.279 1.279 20 H -0.278 1.278 21 C -0.008 4.008 22 N -0.274 5.274 23 C -0.039 4.039 24 C -0.043 4.043 25 C -0.048 4.048 26 N -0.537 5.537 27 C 0.244 3.756 28 C -0.114 4.114 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.273 0.727 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.122 0.878 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.122 0.878 46 H 0.112 0.888 47 H 0.119 0.881 48 H 0.085 0.915 49 H 0.076 0.924 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.924 1.557 -16.732 16.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.274 6.274 4 C 0.365 3.635 5 O -0.395 6.395 6 C -0.243 4.243 7 C -0.008 4.008 8 C -0.243 4.243 9 C 0.201 3.799 10 O -0.218 6.218 11 C 0.119 3.881 12 H 0.097 0.903 13 C -0.653 4.653 14 H 0.094 0.906 15 C -0.166 4.166 16 N -0.496 5.496 17 Si 0.885 3.115 18 H -0.199 1.199 19 H -0.205 1.205 20 H -0.204 1.204 21 C -0.127 4.127 22 N 0.068 4.932 23 C -0.180 4.180 24 C -0.184 4.184 25 C -0.189 4.189 26 N -0.263 5.263 27 C 0.105 3.895 28 C -0.171 4.171 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.087 0.913 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.140 0.860 40 H 0.125 0.875 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.140 0.860 46 H 0.131 0.869 47 H 0.137 0.863 48 H 0.103 0.897 49 H 0.095 0.905 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.679 2.576 -15.336 15.780 hybrid contribution -0.647 -1.096 -1.210 1.757 sum 2.032 1.480 -16.546 16.736 Atomic orbital electron populations 1.21824 0.92394 1.03248 1.03630 1.23062 0.95445 0.79636 1.02810 1.86532 1.23750 1.32784 1.84331 1.20732 0.80590 0.89353 0.72793 1.90806 1.59721 1.42604 1.46364 1.19655 0.94690 0.91261 1.18677 1.21377 1.00639 0.90384 0.88363 1.20873 0.92882 0.99146 1.11436 1.20033 0.89194 0.85052 0.85586 1.86398 1.27935 1.23472 1.83947 1.20617 0.76885 0.91931 0.98635 0.90310 1.22069 1.35273 1.16007 0.91998 0.90636 1.26114 0.92167 0.91898 1.06383 1.71038 1.23745 1.38282 1.16562 0.83570 0.76496 0.77790 0.73622 1.19886 1.20492 1.20401 1.25104 1.07490 1.07279 0.72819 1.46434 1.15065 1.14416 1.17315 1.24220 0.78148 1.10036 1.05618 1.24069 1.04005 0.89653 1.00693 1.24132 1.02534 0.87687 1.04578 1.67427 1.39264 0.98067 1.21516 1.21187 0.90263 0.92232 0.85791 1.21121 0.98381 0.93615 1.03976 0.89999 0.91332 0.91438 0.91075 0.90995 0.83122 0.83654 0.91336 0.84847 0.84770 0.85956 0.87464 0.86354 0.86526 0.86890 0.86420 0.86003 0.86928 0.86289 0.89694 0.90546 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.20 10.29 37.16 0.38 0.58 16 2 C 0.06 0.04 6.20 37.16 0.23 0.27 16 3 O -0.36 -0.91 9.55 -40.62 -0.39 -1.30 16 4 C 0.52 1.92 7.83 34.50 0.27 2.19 16 5 O -0.50 -2.63 13.15 -19.26 -0.25 -2.89 16 6 C -0.24 -0.73 5.89 -104.84 -0.62 -1.34 16 7 C 0.02 0.02 9.68 -39.26 -0.38 -0.36 16 8 C -0.22 -0.33 9.97 -39.70 -0.40 -0.73 16 9 C 0.38 1.07 6.62 -16.95 -0.11 0.95 16 10 O -0.31 -0.61 5.17 -18.14 -0.09 -0.70 16 11 C 0.17 0.22 1.61 -27.88 -0.04 0.17 16 12 H 0.08 0.01 4.64 -51.93 -0.24 -0.23 16 13 C -0.62 -4.75 8.87 -34.44 -0.31 -5.05 16 14 H 0.08 0.73 7.82 -52.48 -0.41 0.32 16 15 C 0.05 0.45 5.22 -17.82 -0.09 0.36 16 16 N -0.86 -8.88 13.02 55.43 0.72 -8.15 16 17 Si 1.06 9.63 29.91 -169.99 -5.08 4.54 16 18 H -0.27 -2.84 7.11 56.52 0.40 -2.44 16 19 H -0.28 -2.78 7.11 56.52 0.40 -2.38 16 20 H -0.28 -2.29 7.11 56.52 0.40 -1.89 16 21 C -0.01 0.03 3.45 -3.82 -0.01 0.02 16 22 N -0.27 2.79 0.05 -395.62 -0.02 2.78 16 23 C -0.04 0.37 7.07 60.07 0.42 0.80 16 24 C -0.04 0.56 7.97 60.07 0.48 1.03 16 25 C -0.05 0.52 7.54 60.06 0.45 0.98 16 26 N -0.54 -1.89 8.53 -9.17 -0.08 -1.97 16 27 C 0.24 0.84 6.82 -82.14 -0.56 0.28 16 28 C -0.11 -0.28 8.85 36.01 0.32 0.04 16 29 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 30 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 31 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.07 0.03 8.14 -51.93 -0.42 -0.40 16 33 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.15 -0.09 7.70 -52.49 -0.40 -0.49 16 35 H 0.15 -0.02 8.06 -52.49 -0.42 -0.45 16 36 H 0.27 2.05 4.62 -40.82 -0.19 1.86 16 37 H 0.13 -0.28 5.86 -51.93 -0.30 -0.59 16 38 H 0.13 -0.70 8.10 -51.93 -0.42 -1.12 16 39 H 0.12 -1.01 7.78 -51.93 -0.40 -1.41 16 40 H 0.11 -1.35 7.89 -51.93 -0.41 -1.76 16 41 H 0.12 -0.85 5.35 -51.93 -0.28 -1.12 16 42 H 0.12 -1.59 8.13 -51.93 -0.42 -2.01 16 43 H 0.11 -1.69 8.03 -51.93 -0.42 -2.10 16 44 H 0.12 -1.49 8.14 -51.93 -0.42 -1.91 16 45 H 0.12 -0.99 5.81 -51.93 -0.30 -1.29 16 46 H 0.11 -1.50 8.14 -51.93 -0.42 -1.92 16 47 H 0.12 -1.41 8.14 -51.93 -0.42 -1.83 16 48 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 49 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 50 H 0.10 0.37 5.89 -51.93 -0.31 0.07 16 LS Contribution 391.68 15.07 5.90 5.90 Total: 0.00 -20.05 391.68 -7.21 -27.26 By element: Atomic # 1 Polarization: -17.71 SS G_CDS: -7.95 Total: -25.67 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 0.04 Total: 0.19 kcal Atomic # 7 Polarization: -7.97 SS G_CDS: 0.62 Total: -7.35 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.74 Total: -4.88 kcal Atomic # 14 Polarization: 9.63 SS G_CDS: -5.08 Total: 4.54 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -20.05 -7.21 -27.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228813615.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.099 kcal (2) G-P(sol) polarization free energy of solvation -20.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds