Wall clock time and date at job start Tue Mar 31 2020 20:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45198 * 109.47097 * 2 1 4 4 C 1.34748 * 116.99713 * 180.02562 * 3 2 1 5 5 O 1.21497 * 120.00095 * 359.97438 * 4 3 2 6 6 C 1.47481 * 119.99843 * 180.02562 * 4 3 2 7 7 C 1.40322 * 120.49724 * 354.52564 * 6 4 3 8 8 C 1.36951 * 118.46475 * 180.02562 * 7 6 4 9 9 C 1.39163 * 119.40167 * 0.02562 * 8 7 6 10 10 O 1.35482 * 119.51571 * 179.97438 * 9 8 7 11 11 C 1.42895 * 117.00202 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47215 * 30.00807 * 11 10 9 13 13 C 1.50700 * 109.47491 * 270.00042 * 11 10 9 14 14 H 1.08004 * 119.99530 * 123.15996 * 13 11 10 15 15 C 1.37876 * 119.99985 * 303.16870 * 13 11 10 16 16 N 1.31510 * 120.00056 * 7.04383 * 15 13 11 17 17 Si 1.86804 * 119.99957 * 187.05000 * 15 13 11 18 18 H 1.48494 * 109.46987 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46695 * 299.99585 * 17 15 13 20 20 H 1.48496 * 109.47190 * 59.99594 * 17 15 13 21 21 C 1.53007 * 109.47129 * 150.00186 * 11 10 9 22 22 N 1.46901 * 109.47013 * 292.37003 * 21 11 10 23 23 C 1.46904 * 109.46967 * 63.46354 * 22 21 11 24 24 C 1.46902 * 109.46915 * 183.45717 * 22 21 11 25 25 C 1.46900 * 109.47472 * 303.46290 * 22 21 11 26 26 N 1.32434 * 120.97163 * 0.27106 * 9 8 7 27 27 C 1.31690 * 121.66446 * 359.43417 * 26 9 8 28 28 C 1.50709 * 119.75397 * 180.26500 * 27 26 9 29 29 H 1.08995 * 109.47327 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47204 * 300.00144 * 1 2 3 31 31 H 1.08997 * 109.47141 * 59.99749 * 1 2 3 32 32 H 1.08994 * 109.47429 * 239.99661 * 2 1 3 33 33 H 1.09005 * 109.47068 * 119.99901 * 2 1 3 34 34 H 1.07994 * 120.76829 * 0.04462 * 7 6 4 35 35 H 1.08000 * 120.29851 * 179.97438 * 8 7 6 36 36 H 0.97006 * 120.00318 * 355.03336 * 16 15 13 37 37 H 1.08993 * 109.47051 * 52.37082 * 21 11 10 38 38 H 1.09003 * 109.47054 * 172.37396 * 21 11 10 39 39 H 1.08996 * 109.47217 * 44.87421 * 23 22 21 40 40 H 1.08993 * 109.47344 * 164.88395 * 23 22 21 41 41 H 1.09000 * 109.46645 * 284.87934 * 23 22 21 42 42 H 1.09001 * 109.46851 * 60.00526 * 24 22 21 43 43 H 1.08998 * 109.46987 * 179.97438 * 24 22 21 44 44 H 1.08994 * 109.47224 * 300.00427 * 24 22 21 45 45 H 1.09000 * 109.47306 * 59.99160 * 25 22 21 46 46 H 1.08999 * 109.47193 * 180.02562 * 25 22 21 47 47 H 1.09007 * 109.46366 * 300.00040 * 25 22 21 48 48 H 1.08994 * 109.47155 * 262.90556 * 28 27 26 49 49 H 1.09000 * 109.47097 * 22.90466 * 28 27 26 50 50 H 1.09002 * 109.46804 * 142.90221 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3498 1.5454 -0.0005 5 8 4.0899 0.5819 -0.0005 6 6 3.9136 2.9082 0.0000 7 6 3.0735 4.0264 -0.1143 8 6 3.6414 5.2726 -0.1097 9 6 5.0229 5.3935 0.0065 10 8 5.5872 6.6252 0.0108 11 6 7.0095 6.6868 0.1333 12 1 7.4515 5.7951 -0.3114 13 6 7.3855 6.7604 1.5908 14 1 8.0464 6.0195 2.0160 15 6 6.8857 7.7734 2.3814 16 7 5.9750 8.5926 1.9027 17 14 7.5022 7.9824 4.1323 18 1 6.8132 9.1354 4.7654 19 1 7.2174 6.7484 4.9078 20 1 8.9663 8.2296 4.1154 21 6 7.5305 7.9297 -0.5911 22 7 7.3266 7.7748 -2.0377 23 6 5.8878 7.6940 -2.3234 24 6 7.9010 8.9304 -2.7396 25 6 7.9867 6.5453 -2.4965 26 7 5.7947 4.3220 0.1072 27 6 5.2909 3.1052 0.1127 28 6 6.2089 1.9163 0.2354 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0039 3.9071 -0.2035 35 1 3.0228 6.1536 -0.1964 36 1 5.7073 8.5302 0.9724 37 1 6.9896 8.8083 -0.2400 38 1 8.5940 8.0513 -0.3852 39 1 5.3613 8.4622 -1.7571 40 1 5.7198 7.8488 -3.3891 41 1 5.5150 6.7110 -2.0359 42 1 8.9685 8.9903 -2.5276 43 1 7.7501 8.8152 -3.8129 44 1 7.4112 9.8426 -2.3992 45 1 7.5605 5.6879 -1.9755 46 1 7.8357 6.4307 -3.5698 47 1 9.0542 6.6054 -2.2844 48 1 6.4145 1.5122 -0.7558 49 1 7.1437 2.2257 0.7027 50 1 5.7323 1.1510 0.8481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228813615.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:04 Heat of formation + Delta-G solvation = 15.816956 kcal Electronic energy + Delta-G solvation = -31140.759257 eV Core-core repulsion = 27059.450091 eV Total energy + Delta-G solvation = -4081.309166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.196 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.06808 -42.04962 -40.98281 -39.05190 -37.70026 -35.56008 -34.29775 -33.07168 -32.33352 -31.49371 -29.72114 -29.62330 -28.98935 -27.73736 -25.91436 -24.82363 -24.18007 -23.41909 -22.46576 -22.33006 -20.00923 -19.33867 -19.05216 -18.15516 -17.98455 -17.83819 -17.75787 -17.65008 -17.13965 -16.51513 -15.82724 -15.46042 -15.35668 -15.31059 -14.93512 -14.61535 -14.46947 -14.36551 -14.21422 -14.00185 -13.87909 -13.63321 -13.59363 -13.44250 -13.39074 -13.27059 -13.18584 -13.14970 -13.07536 -12.88337 -12.78610 -12.52416 -12.45456 -12.11023 -11.98643 -11.55566 -11.37019 -11.09296 -10.94381 -10.71254 -10.64576 -9.53946 -8.68713 -6.62169 -0.48809 0.13000 0.80313 1.40949 1.47375 1.55720 1.58346 1.70829 1.99189 2.39885 2.62707 2.68768 2.89239 2.93175 3.01467 3.15260 3.52974 3.63064 3.73758 3.83417 3.92853 4.00133 4.03972 4.06106 4.09414 4.14451 4.17421 4.29268 4.34142 4.34893 4.43812 4.47740 4.48953 4.60797 4.62633 4.65511 4.69908 4.72190 4.75067 4.86183 4.89530 4.91148 4.97426 5.05440 5.17549 5.29722 5.45919 5.58731 5.99878 6.26120 6.54904 6.63703 6.73072 7.15819 8.69473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 O -0.358 6.358 4 C 0.519 3.481 5 O -0.526 6.526 6 C -0.249 4.249 7 C 0.023 3.977 8 C -0.220 4.220 9 C 0.368 3.632 10 O -0.304 6.304 11 C 0.173 3.827 12 H 0.088 0.912 13 C -0.626 4.626 14 H 0.045 0.955 15 C 0.025 3.975 16 N -0.898 5.898 17 Si 1.074 2.926 18 H -0.293 1.293 19 H -0.298 1.298 20 H -0.265 1.265 21 C 0.013 3.987 22 N -0.259 5.259 23 C -0.042 4.042 24 C -0.045 4.045 25 C -0.051 4.051 26 N -0.549 5.549 27 C 0.230 3.770 28 C -0.107 4.107 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.173 0.827 35 H 0.164 0.836 36 H 0.285 0.715 37 H 0.116 0.884 38 H 0.146 0.854 39 H 0.108 0.892 40 H 0.148 0.852 41 H 0.094 0.906 42 H 0.127 0.873 43 H 0.145 0.855 44 H 0.115 0.885 45 H 0.090 0.910 46 H 0.148 0.852 47 H 0.131 0.869 48 H 0.096 0.904 49 H 0.074 0.926 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.739 2.173 -19.734 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.274 6.274 4 C 0.366 3.634 5 O -0.417 6.417 6 C -0.253 4.253 7 C -0.001 4.001 8 C -0.241 4.241 9 C 0.189 3.811 10 O -0.210 6.210 11 C 0.119 3.881 12 H 0.105 0.895 13 C -0.664 4.664 14 H 0.064 0.936 15 C -0.184 4.184 16 N -0.535 5.535 17 Si 0.902 3.098 18 H -0.219 1.219 19 H -0.225 1.225 20 H -0.190 1.190 21 C -0.108 4.108 22 N 0.083 4.917 23 C -0.183 4.183 24 C -0.185 4.185 25 C -0.192 4.192 26 N -0.275 5.275 27 C 0.092 3.908 28 C -0.164 4.164 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.190 0.810 35 H 0.181 0.819 36 H 0.099 0.901 37 H 0.134 0.866 38 H 0.164 0.836 39 H 0.127 0.873 40 H 0.167 0.833 41 H 0.112 0.888 42 H 0.145 0.855 43 H 0.163 0.837 44 H 0.134 0.866 45 H 0.109 0.891 46 H 0.166 0.834 47 H 0.150 0.850 48 H 0.114 0.886 49 H 0.092 0.908 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.502 3.196 -18.346 18.790 hybrid contribution -0.608 -1.387 -0.331 1.550 sum 1.893 1.809 -18.677 18.860 Atomic orbital electron populations 1.21831 0.90628 1.04325 1.03738 1.23281 0.96805 0.78802 1.02734 1.86529 1.23002 1.33914 1.83994 1.20858 0.80874 0.89351 0.72299 1.90792 1.60229 1.43260 1.47460 1.19741 0.94793 0.91583 1.19170 1.21605 1.01503 0.89692 0.87299 1.21085 0.92456 0.99892 1.10628 1.20325 0.89912 0.85124 0.85782 1.86394 1.27817 1.22961 1.83874 1.20583 0.76302 0.95164 0.96088 0.89458 1.22200 1.34166 1.14254 0.95787 0.93619 1.26134 0.92849 0.92776 1.06630 1.70982 1.25143 1.39486 1.17883 0.83378 0.77037 0.75857 0.73547 1.21905 1.22473 1.19005 1.24265 1.07328 1.02782 0.76448 1.46023 1.15405 1.16237 1.14013 1.24255 0.78027 1.08060 1.07964 1.24311 1.04350 0.87896 1.01951 1.24273 1.02832 0.85852 1.06245 1.67399 1.39794 0.98308 1.21972 1.21336 0.90799 0.92395 0.86297 1.21036 0.97941 0.93074 1.04300 0.88437 0.91520 0.90969 0.90835 0.91478 0.80977 0.81859 0.90068 0.86632 0.83574 0.87335 0.83350 0.88786 0.85467 0.83655 0.86648 0.89084 0.83396 0.85016 0.88616 0.90757 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.48 10.29 71.98 0.74 1.22 16 2 C 0.06 0.09 6.20 71.98 0.45 0.54 16 3 O -0.36 -1.91 9.55 -56.59 -0.54 -2.45 16 4 C 0.52 4.30 7.83 70.26 0.55 4.85 16 5 O -0.53 -6.18 13.15 19.84 0.26 -5.92 16 6 C -0.25 -1.72 5.89 -20.01 -0.12 -1.84 16 7 C 0.02 0.06 9.68 22.47 0.22 0.28 16 8 C -0.22 -0.68 9.97 22.19 0.22 -0.46 16 9 C 0.37 2.40 6.62 84.82 0.56 2.96 16 10 O -0.30 -1.49 5.17 -87.81 -0.45 -1.94 16 11 C 0.17 0.62 1.61 29.85 0.05 0.67 16 12 H 0.09 0.14 4.64 -2.39 -0.01 0.13 16 13 C -0.63 -11.02 8.87 25.60 0.23 -10.79 16 14 H 0.05 1.03 7.82 -2.91 -0.02 1.00 16 15 C 0.02 0.54 5.22 84.66 0.44 0.98 16 16 N -0.90 -20.09 13.02 21.45 0.28 -19.81 16 17 Si 1.07 22.10 29.91 68.60 2.05 24.15 16 18 H -0.29 -6.84 7.11 99.48 0.71 -6.14 16 19 H -0.30 -6.84 7.11 99.48 0.71 -6.13 16 20 H -0.27 -4.70 7.11 99.48 0.71 -4.00 16 21 C 0.01 -0.11 3.45 86.31 0.30 0.18 16 22 N -0.26 5.68 0.05 ******* -0.07 5.62 16 23 C -0.04 0.85 7.07 127.69 0.90 1.75 16 24 C -0.05 1.30 7.97 127.69 1.02 2.32 16 25 C -0.05 1.21 7.54 127.69 0.96 2.17 16 26 N -0.55 -4.65 8.53 -295.82 -2.52 -7.17 16 27 C 0.23 1.90 6.82 42.91 0.29 2.20 16 28 C -0.11 -0.70 8.85 71.24 0.63 -0.07 16 29 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 30 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.07 0.17 8.14 -2.38 -0.02 0.15 16 34 H 0.17 -0.36 7.70 -2.91 -0.02 -0.39 16 35 H 0.16 -0.15 8.06 -2.91 -0.02 -0.17 16 36 H 0.29 4.68 4.62 -92.70 -0.43 4.25 16 37 H 0.12 -0.44 5.86 -2.39 -0.01 -0.45 16 38 H 0.15 -1.59 8.10 -2.39 -0.02 -1.61 16 39 H 0.11 -1.83 7.78 -2.39 -0.02 -1.85 16 40 H 0.15 -4.22 7.89 -2.39 -0.02 -4.24 16 41 H 0.09 -1.37 5.35 -2.39 -0.01 -1.38 16 42 H 0.13 -3.83 8.13 -2.39 -0.02 -3.85 16 43 H 0.15 -4.99 8.03 -2.39 -0.02 -5.01 16 44 H 0.11 -3.15 8.14 -2.39 -0.02 -3.17 16 45 H 0.09 -1.48 5.81 -2.39 -0.01 -1.49 16 46 H 0.15 -4.46 8.14 -2.39 -0.02 -4.48 16 47 H 0.13 -3.39 8.14 -2.38 -0.02 -3.41 16 48 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 49 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.09 0.84 5.89 -2.39 -0.01 0.82 16 Total: 0.00 -49.96 391.68 7.71 -42.25 By element: Atomic # 1 Polarization: -42.95 SS G_CDS: 1.27 Total: -41.68 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 7.44 Total: 6.97 kcal Atomic # 7 Polarization: -19.06 SS G_CDS: -2.31 Total: -21.37 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.73 Total: -10.32 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: 2.05 Total: 24.15 kcal Total: -49.96 7.71 -42.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228813615.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.063 kcal (2) G-P(sol) polarization free energy of solvation -49.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds