Wall clock time and date at job start Tue Mar 31 2020 21:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40449 * 126.82046 * 2 1 4 4 C 1.30710 * 106.79238 * 179.97438 * 3 2 1 5 5 N 1.33238 * 108.94948 * 359.76283 * 4 3 2 6 6 C 1.30839 * 109.82554 * 0.40494 * 5 4 3 7 7 C 1.50699 * 125.95713 * 179.86275 * 6 5 4 8 8 O 1.42893 * 109.47102 * 269.68766 * 7 6 5 9 9 C 1.42902 * 113.99674 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46962 * 179.97438 * 9 8 7 11 11 O 1.21284 * 120.00188 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99960 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99971 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.46955 * 34.99585 * 13 12 10 15 15 C 1.53002 * 109.46688 * 274.99603 * 13 12 10 16 16 C 1.52997 * 109.46817 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.47127 * 60.00361 * 16 15 13 18 18 C 1.52999 * 109.46626 * 299.99539 * 17 16 15 19 19 C 1.52996 * 109.47258 * 154.99970 * 13 12 10 20 20 H 1.09000 * 109.47380 * 59.99156 * 19 13 12 21 21 N 1.46510 * 109.46858 * 299.99700 * 19 13 12 22 22 C 1.36936 * 119.99911 * 154.99804 * 21 19 13 23 23 H 1.08004 * 119.99844 * 0.02562 * 22 21 19 24 24 C 1.38806 * 120.00080 * 179.97438 * 22 21 19 25 25 N 1.31625 * 120.00101 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00007 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47268 * 89.99392 * 26 24 22 28 28 H 1.48506 * 109.47041 * 209.99672 * 26 24 22 29 29 H 1.48497 * 109.46702 * 329.99330 * 26 24 22 30 30 H 1.08999 * 109.46575 * 270.03381 * 1 2 3 31 31 H 1.08993 * 109.47577 * 30.03932 * 1 2 3 32 32 H 1.09000 * 109.46610 * 150.04252 * 1 2 3 33 33 H 1.08010 * 125.52406 * 180.02562 * 4 3 2 34 34 H 1.09005 * 109.46790 * 149.68629 * 7 6 5 35 35 H 1.08998 * 109.47467 * 29.69279 * 7 6 5 36 36 H 1.09002 * 109.47328 * 60.00210 * 9 8 7 37 37 H 1.08994 * 109.47481 * 299.99865 * 9 8 7 38 38 H 0.96998 * 120.00021 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.47070 * 60.00104 * 15 13 12 40 40 H 1.08996 * 109.47407 * 299.99704 * 15 13 12 41 41 H 1.09001 * 109.47502 * 300.00518 * 16 15 13 42 42 H 1.09001 * 109.47289 * 180.02562 * 16 15 13 43 43 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 44 44 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 45 45 H 1.09002 * 109.46719 * 180.02562 * 18 17 16 46 46 H 1.08993 * 109.47839 * 299.99931 * 18 17 16 47 47 H 0.96994 * 119.99768 * 334.99990 * 21 19 13 48 48 H 0.96997 * 119.99816 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6767 0.0006 5 7 3.5097 -0.6555 0.0061 6 6 2.2707 -1.0760 0.0005 7 6 1.8249 -2.5155 0.0011 8 8 1.6840 -2.9711 -1.3460 9 6 1.2620 -4.3317 -1.4582 10 6 1.1465 -4.7034 -2.9141 11 8 1.4010 -3.8839 -3.7712 12 7 0.7603 -5.9464 -3.2637 13 6 0.6486 -6.3079 -4.6791 14 1 1.4251 -5.7958 -5.2472 15 6 -0.7266 -5.8913 -5.2047 16 6 -0.8431 -6.2682 -6.6829 17 6 -0.6745 -7.7810 -6.8384 18 6 0.7007 -8.1975 -6.3127 19 6 0.8169 -7.8206 -4.8339 20 1 0.0404 -8.3327 -4.2657 21 7 2.1338 -8.2195 -4.3306 22 6 2.3378 -9.4981 -3.8847 23 1 1.5281 -10.2126 -3.9046 24 6 3.5855 -9.8761 -3.4083 25 7 3.7818 -11.1053 -2.9803 26 14 4.9861 -8.6406 -3.3747 27 1 4.9823 -7.9232 -2.0745 28 1 6.2784 -9.3525 -3.5434 29 1 4.8111 -7.6639 -4.4795 30 1 -0.3632 0.0006 1.0277 31 1 -0.3634 0.8895 -0.5144 32 1 -0.3632 -0.8904 -0.5132 33 1 4.4254 1.2876 0.0011 34 1 0.8672 -2.5990 0.5150 35 1 2.5674 -3.1257 0.5152 36 1 0.2925 -4.4525 -0.9748 37 1 1.9925 -4.9799 -0.9743 38 1 0.5571 -6.6019 -2.5782 39 1 -0.8466 -4.8136 -5.0943 40 1 -1.5031 -6.4034 -4.6365 41 1 -0.0665 -5.7559 -7.2509 42 1 -1.8226 -5.9711 -7.0576 43 1 -1.4510 -8.2933 -6.2705 44 1 -0.7579 -8.0496 -7.8915 45 1 0.8210 -9.2751 -6.4239 46 1 1.4772 -7.6851 -6.8806 47 1 2.8610 -7.5779 -4.3131 48 1 4.6536 -11.3693 -2.6470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229435053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:39 Heat of formation + Delta-G solvation = 19.797046 kcal Electronic energy + Delta-G solvation = -29404.607299 eV Core-core repulsion = 25303.993302 eV Total energy + Delta-G solvation = -4100.613997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.39350 -40.00100 -38.49726 -37.42202 -34.40191 -34.21867 -33.90014 -32.30249 -31.40475 -30.04050 -28.85979 -28.17424 -27.36374 -26.20429 -23.52650 -22.32460 -22.31978 -21.03614 -20.99278 -20.31690 -19.66808 -17.94776 -17.62697 -17.25855 -16.85500 -16.40205 -16.15131 -15.59473 -15.30463 -15.04050 -14.74769 -14.53752 -14.17420 -13.92226 -13.57750 -13.55639 -13.48357 -13.42488 -13.16679 -12.80106 -12.59643 -12.35443 -12.31232 -12.18866 -11.88665 -11.41397 -11.04843 -10.97233 -10.90290 -10.64531 -10.40668 -10.31723 -10.15747 -10.15306 -10.06022 -9.96914 -9.85835 -9.64767 -9.59961 -8.99403 -8.78499 -7.34820 -5.83847 -3.20098 1.13354 1.93967 2.47572 2.71707 2.96492 3.34236 3.41068 3.44367 3.58387 4.09743 4.12892 4.38357 4.54072 4.67270 4.70681 4.72587 4.84989 4.86210 4.88643 5.01029 5.01645 5.06682 5.18261 5.20326 5.37278 5.42992 5.54949 5.63003 5.72293 5.82000 5.86500 5.94488 6.00158 6.12773 6.18287 6.31921 6.34024 6.37826 6.38023 6.41902 6.54323 6.71765 6.77144 6.94328 7.69079 7.78766 7.90999 8.34854 8.37024 9.12924 9.85887 10.05280 11.34025 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011002 B = 0.002940 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.454735 B = 9520.072807 C =11417.467595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.369 5.369 3 N -0.317 5.317 4 C 0.200 3.800 5 N -0.524 5.524 6 C 0.282 3.718 7 C 0.140 3.860 8 O -0.355 6.355 9 C 0.043 3.957 10 C 0.513 3.487 11 O -0.527 6.527 12 N -0.709 5.709 13 C 0.139 3.861 14 H 0.084 0.916 15 C -0.123 4.123 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.134 4.134 19 C 0.178 3.822 20 H 0.061 0.939 21 N -0.747 5.747 22 C -0.245 4.245 23 H 0.091 0.909 24 C 0.009 3.991 25 N -0.932 5.932 26 Si 0.880 3.120 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.221 0.779 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.406 0.594 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.362 0.638 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.014 17.754 5.556 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.161 5.161 3 N -0.146 5.146 4 C -0.102 4.102 5 N -0.252 5.252 6 C 0.005 3.995 7 C 0.060 3.940 8 O -0.272 6.272 9 C -0.037 4.037 10 C 0.298 3.702 11 O -0.403 6.403 12 N -0.361 5.361 13 C 0.034 3.966 14 H 0.102 0.898 15 C -0.162 4.162 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.174 4.174 19 C 0.068 3.932 20 H 0.079 0.921 21 N -0.389 5.389 22 C -0.374 4.374 23 H 0.109 0.891 24 C -0.188 4.188 25 N -0.579 5.579 26 Si 0.710 3.290 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.237 0.763 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.241 0.759 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.195 0.805 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.798 18.755 4.866 22.686 hybrid contribution 0.923 0.201 0.570 1.103 sum -10.875 18.956 5.436 22.520 Atomic orbital electron populations 1.22031 0.73531 1.05552 1.03830 1.50257 1.08168 1.03888 1.53758 1.78052 1.02239 1.08000 1.26279 1.26011 0.95826 0.90258 0.98133 1.70483 1.19440 1.11677 1.23628 1.23722 0.86395 0.91639 0.97763 1.20674 1.01290 0.86243 0.85778 1.88065 1.89043 1.26488 1.23564 1.22323 1.01304 0.84138 0.95949 1.20035 0.77459 0.82696 0.90024 1.90727 1.48503 1.49471 1.51557 1.45843 1.68663 1.12298 1.09273 1.21374 0.97531 0.97062 0.80603 0.89794 1.21858 0.96899 1.01080 0.96366 1.21486 1.01311 0.96692 0.95799 1.21577 0.98400 0.95235 1.00549 1.22197 0.95425 1.02139 0.97688 1.20452 0.89350 0.89922 0.93434 0.92139 1.42807 1.07672 1.11682 1.76750 1.19024 0.97335 0.87034 1.34041 0.89136 1.24642 0.97205 0.95983 1.00926 1.69696 1.23248 1.16747 1.48239 0.86628 0.83177 0.81177 0.77969 1.21077 1.21720 1.20337 0.89981 0.88641 0.88600 0.76308 0.90540 0.88724 0.89843 0.89208 0.75949 0.91888 0.91771 0.91990 0.92234 0.92154 0.92490 0.91047 0.92534 0.80511 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 11.16 59.85 0.67 1.23 16 2 N -0.37 -4.00 4.04 -65.10 -0.26 -4.27 16 3 N -0.32 -3.89 12.70 29.29 0.37 -3.51 16 4 C 0.20 2.33 13.03 -91.82 -1.20 1.14 16 5 N -0.52 -7.15 11.19 -11.97 -0.13 -7.28 16 6 C 0.28 3.37 7.61 -155.69 -1.19 2.18 16 7 C 0.14 1.30 6.06 36.01 0.22 1.51 16 8 O -0.36 -4.56 9.86 -55.14 -0.54 -5.10 16 9 C 0.04 0.46 6.42 36.01 0.23 0.69 16 10 C 0.51 7.66 7.87 -10.98 -0.09 7.58 16 11 O -0.53 -10.13 16.16 -14.36 -0.23 -10.36 16 12 N -0.71 -9.96 4.91 -53.80 -0.26 -10.23 16 13 C 0.14 2.13 1.98 -67.93 -0.13 1.99 16 14 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 15 C -0.12 -1.57 5.49 -26.73 -0.15 -1.71 16 16 C -0.11 -1.37 5.92 -26.73 -0.16 -1.53 16 17 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 18 C -0.13 -2.16 5.50 -26.71 -0.15 -2.31 16 19 C 0.18 3.07 2.30 -67.90 -0.16 2.92 16 20 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 21 N -0.75 -16.27 4.76 -53.40 -0.25 -16.53 16 22 C -0.24 -6.40 10.41 -15.06 -0.16 -6.55 16 23 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 24 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 25 N -0.93 -28.18 13.97 55.49 0.78 -27.40 16 26 Si 0.88 21.81 27.74 -169.99 -4.71 17.09 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.48 7.72 -51.93 -0.40 0.07 16 33 H 0.22 1.66 8.06 -52.48 -0.42 1.23 16 34 H 0.08 0.41 7.76 -51.93 -0.40 0.01 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.41 5.06 8.60 -40.82 -0.35 4.71 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.36 8.21 5.66 -40.82 -0.23 7.98 16 48 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 396.89 15.07 5.98 5.98 Total: -1.00 -37.13 396.89 -9.49 -46.62 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -7.71 Total: 9.37 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -2.50 Total: 5.62 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: 0.23 Total: -69.22 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.78 Total: -15.46 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.13 -9.49 -46.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229435053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.414 kcal (2) G-P(sol) polarization free energy of solvation -37.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds