Wall clock time and date at job start Tue Mar 31 2020 21:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40449 * 126.82046 * 2 1 4 4 C 1.30710 * 106.79238 * 179.97438 * 3 2 1 5 5 N 1.33238 * 108.94948 * 359.76283 * 4 3 2 6 6 C 1.30839 * 109.82554 * 0.40494 * 5 4 3 7 7 C 1.50699 * 125.95713 * 179.86275 * 6 5 4 8 8 O 1.42893 * 109.47102 * 269.68766 * 7 6 5 9 9 C 1.42902 * 113.99674 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46962 * 179.97438 * 9 8 7 11 11 O 1.21284 * 120.00188 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99960 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99971 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.46955 * 34.99585 * 13 12 10 15 15 C 1.53002 * 109.46688 * 274.99603 * 13 12 10 16 16 C 1.52997 * 109.46817 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.47127 * 60.00361 * 16 15 13 18 18 C 1.52999 * 109.46626 * 299.99539 * 17 16 15 19 19 C 1.52996 * 109.47258 * 154.99970 * 13 12 10 20 20 H 1.09000 * 109.47380 * 59.99156 * 19 13 12 21 21 N 1.46510 * 109.46858 * 299.99700 * 19 13 12 22 22 C 1.36936 * 119.99911 * 154.99804 * 21 19 13 23 23 H 1.08004 * 119.99844 * 0.02562 * 22 21 19 24 24 C 1.38806 * 120.00080 * 179.97438 * 22 21 19 25 25 N 1.31625 * 120.00101 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00007 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47268 * 89.99392 * 26 24 22 28 28 H 1.48506 * 109.47041 * 209.99672 * 26 24 22 29 29 H 1.48497 * 109.46702 * 329.99330 * 26 24 22 30 30 H 1.08999 * 109.46575 * 270.03381 * 1 2 3 31 31 H 1.08993 * 109.47577 * 30.03932 * 1 2 3 32 32 H 1.09000 * 109.46610 * 150.04252 * 1 2 3 33 33 H 1.08010 * 125.52406 * 180.02562 * 4 3 2 34 34 H 1.09005 * 109.46790 * 149.68629 * 7 6 5 35 35 H 1.08998 * 109.47467 * 29.69279 * 7 6 5 36 36 H 1.09002 * 109.47328 * 60.00210 * 9 8 7 37 37 H 1.08994 * 109.47481 * 299.99865 * 9 8 7 38 38 H 0.96998 * 120.00021 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.47070 * 60.00104 * 15 13 12 40 40 H 1.08996 * 109.47407 * 299.99704 * 15 13 12 41 41 H 1.09001 * 109.47502 * 300.00518 * 16 15 13 42 42 H 1.09001 * 109.47289 * 180.02562 * 16 15 13 43 43 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 44 44 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 45 45 H 1.09002 * 109.46719 * 180.02562 * 18 17 16 46 46 H 1.08993 * 109.47839 * 299.99931 * 18 17 16 47 47 H 0.96994 * 119.99768 * 334.99990 * 21 19 13 48 48 H 0.96997 * 119.99816 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6767 0.0006 5 7 3.5097 -0.6555 0.0061 6 6 2.2707 -1.0760 0.0005 7 6 1.8249 -2.5155 0.0011 8 8 1.6840 -2.9711 -1.3460 9 6 1.2620 -4.3317 -1.4582 10 6 1.1465 -4.7034 -2.9141 11 8 1.4010 -3.8839 -3.7712 12 7 0.7603 -5.9464 -3.2637 13 6 0.6486 -6.3079 -4.6791 14 1 1.4251 -5.7958 -5.2472 15 6 -0.7266 -5.8913 -5.2047 16 6 -0.8431 -6.2682 -6.6829 17 6 -0.6745 -7.7810 -6.8384 18 6 0.7007 -8.1975 -6.3127 19 6 0.8169 -7.8206 -4.8339 20 1 0.0404 -8.3327 -4.2657 21 7 2.1338 -8.2195 -4.3306 22 6 2.3378 -9.4981 -3.8847 23 1 1.5281 -10.2126 -3.9046 24 6 3.5855 -9.8761 -3.4083 25 7 3.7818 -11.1053 -2.9803 26 14 4.9861 -8.6406 -3.3747 27 1 4.9823 -7.9232 -2.0745 28 1 6.2784 -9.3525 -3.5434 29 1 4.8111 -7.6639 -4.4795 30 1 -0.3632 0.0006 1.0277 31 1 -0.3634 0.8895 -0.5144 32 1 -0.3632 -0.8904 -0.5132 33 1 4.4254 1.2876 0.0011 34 1 0.8672 -2.5990 0.5150 35 1 2.5674 -3.1257 0.5152 36 1 0.2925 -4.4525 -0.9748 37 1 1.9925 -4.9799 -0.9743 38 1 0.5571 -6.6019 -2.5782 39 1 -0.8466 -4.8136 -5.0943 40 1 -1.5031 -6.4034 -4.6365 41 1 -0.0665 -5.7559 -7.2509 42 1 -1.8226 -5.9711 -7.0576 43 1 -1.4510 -8.2933 -6.2705 44 1 -0.7579 -8.0496 -7.8915 45 1 0.8210 -9.2751 -6.4239 46 1 1.4772 -7.6851 -6.8806 47 1 2.8610 -7.5779 -4.3131 48 1 4.6536 -11.3693 -2.6470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229435053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:37 Heat of formation + Delta-G solvation = -6.178962 kcal Electronic energy + Delta-G solvation = -29405.733703 eV Core-core repulsion = 25303.993302 eV Total energy + Delta-G solvation = -4101.740401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.19560 -41.17063 -39.57343 -38.47467 -35.92113 -35.14183 -35.11171 -33.31967 -33.11564 -31.12645 -30.13690 -29.16950 -28.15605 -27.00573 -25.30772 -23.48803 -23.11867 -22.46014 -21.79555 -21.47626 -20.88264 -19.71474 -18.52043 -18.17078 -17.88616 -17.25519 -17.15224 -16.78090 -16.46868 -16.19377 -15.80576 -15.78387 -15.31697 -15.04173 -14.92067 -14.67667 -14.56660 -14.37635 -14.12835 -14.10454 -13.74522 -13.64028 -13.30230 -13.10649 -13.05378 -12.91956 -12.63099 -12.39738 -12.16031 -12.07216 -11.82519 -11.70761 -11.48014 -11.18834 -11.14772 -11.03043 -10.92294 -10.89499 -10.76034 -10.64821 -9.99587 -9.29583 -8.00498 -5.32117 0.32524 1.27109 1.35987 1.40201 1.44306 1.58842 1.64392 2.02910 2.47334 2.79091 3.30664 3.33843 3.46287 3.47412 3.67942 3.76377 3.84941 4.10824 4.13967 4.18769 4.21958 4.24861 4.26911 4.32585 4.34432 4.42557 4.48721 4.51630 4.58639 4.61098 4.67941 4.94792 5.01107 5.14824 5.18492 5.23494 5.28938 5.31087 5.34412 5.46367 5.53164 5.63064 5.67895 5.81287 5.84653 6.23826 6.59800 6.96648 7.08796 7.26383 7.85255 8.02988 9.20796 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011002 B = 0.002940 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.454735 B = 9520.072807 C =11417.467595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.369 5.369 3 N -0.341 5.341 4 C 0.191 3.809 5 N -0.564 5.564 6 C 0.268 3.732 7 C 0.139 3.861 8 O -0.390 6.390 9 C 0.047 3.953 10 C 0.508 3.492 11 O -0.577 6.577 12 N -0.704 5.704 13 C 0.146 3.854 14 H 0.056 0.944 15 C -0.113 4.113 16 C -0.112 4.112 17 C -0.110 4.110 18 C -0.131 4.131 19 C 0.176 3.824 20 H 0.067 0.933 21 N -0.749 5.749 22 C -0.213 4.213 23 H 0.068 0.932 24 C -0.053 4.053 25 N -0.980 5.980 26 Si 0.938 3.062 27 H -0.275 1.275 28 H -0.301 1.301 29 H -0.271 1.271 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.247 0.753 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.132 0.868 37 H 0.102 0.898 38 H 0.415 0.585 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.048 0.952 46 H 0.045 0.955 47 H 0.359 0.641 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.299 18.945 6.156 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.161 5.161 3 N -0.170 5.170 4 C -0.111 4.111 5 N -0.293 5.293 6 C -0.009 4.009 7 C 0.060 3.940 8 O -0.307 6.307 9 C -0.032 4.032 10 C 0.294 3.706 11 O -0.457 6.457 12 N -0.356 5.356 13 C 0.041 3.959 14 H 0.074 0.926 15 C -0.152 4.152 16 C -0.150 4.150 17 C -0.148 4.148 18 C -0.172 4.172 19 C 0.068 3.932 20 H 0.085 0.915 21 N -0.391 5.391 22 C -0.344 4.344 23 H 0.086 0.914 24 C -0.245 4.245 25 N -0.631 5.631 26 Si 0.768 3.232 27 H -0.201 1.201 28 H -0.228 1.228 29 H -0.197 1.197 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.129 0.871 33 H 0.262 0.738 34 H 0.140 0.860 35 H 0.119 0.881 36 H 0.150 0.850 37 H 0.120 0.880 38 H 0.252 0.748 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.191 0.809 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.155 19.970 5.465 25.081 hybrid contribution 1.518 -0.168 0.331 1.563 sum -12.637 19.803 5.796 24.196 Atomic orbital electron populations 1.22420 0.71093 1.06457 1.05860 1.50559 1.09547 1.03239 1.52709 1.77973 1.02720 1.09229 1.27088 1.26598 0.96704 0.90163 0.97597 1.70457 1.21043 1.12723 1.25103 1.24233 0.86311 0.92940 0.97381 1.20969 1.03812 0.84599 0.84586 1.88002 1.89604 1.27328 1.25792 1.22407 1.04205 0.83644 0.92902 1.20822 0.76063 0.82035 0.91644 1.90704 1.50720 1.50833 1.53395 1.45822 1.68267 1.12567 1.08952 1.21186 0.98484 0.94815 0.81426 0.92608 1.21792 0.95392 1.00948 0.97114 1.21490 1.02547 0.95819 0.95138 1.21510 0.95982 0.95896 1.01439 1.22096 0.97787 1.00512 0.96792 1.20671 0.87082 0.91498 0.93932 0.91482 1.42851 1.09478 1.09995 1.76776 1.18990 0.96148 0.88031 1.31264 0.91371 1.25235 0.99625 0.97392 1.02255 1.69837 1.23579 1.18788 1.50868 0.85677 0.80014 0.79152 0.78378 1.20140 1.22844 1.19697 0.87337 0.88378 0.87105 0.73754 0.86028 0.88086 0.85018 0.87984 0.74849 0.92282 0.89804 0.92899 0.89530 0.90898 0.91044 0.93314 0.93636 0.80903 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 11.16 127.77 1.43 2.23 16 2 N -0.37 -7.48 4.04 -359.89 -1.45 -8.94 16 3 N -0.34 -8.17 12.70 -61.24 -0.78 -8.95 16 4 C 0.19 4.43 13.03 180.77 2.36 6.78 16 5 N -0.56 -15.22 11.19 -191.77 -2.15 -17.37 16 6 C 0.27 6.07 7.61 138.22 1.05 7.12 16 7 C 0.14 2.22 6.06 71.24 0.43 2.65 16 8 O -0.39 -9.17 9.86 -129.94 -1.28 -10.45 16 9 C 0.05 0.88 6.42 71.24 0.46 1.34 16 10 C 0.51 14.32 7.87 87.66 0.69 15.01 16 11 O -0.58 -22.00 16.16 15.99 0.26 -21.74 16 12 N -0.70 -18.48 4.91 -442.52 -2.17 -20.65 16 13 C 0.15 4.28 1.98 44.99 0.09 4.37 16 14 H 0.06 1.98 7.58 -2.39 -0.02 1.96 16 15 C -0.11 -2.60 5.49 30.59 0.17 -2.44 16 16 C -0.11 -2.35 5.92 30.60 0.18 -2.17 16 17 C -0.11 -2.51 5.92 30.60 0.18 -2.32 16 18 C -0.13 -4.13 5.50 30.61 0.17 -3.96 16 19 C 0.18 5.88 2.30 45.00 0.10 5.98 16 20 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 21 N -0.75 -32.23 4.76 -322.85 -1.54 -33.76 16 22 C -0.21 -11.18 10.41 84.03 0.87 -10.31 16 23 H 0.07 3.86 8.06 -2.91 -0.02 3.84 16 24 C -0.05 -3.00 5.50 84.86 0.47 -2.53 16 25 N -0.98 -60.37 13.97 21.65 0.30 -60.07 16 26 Si 0.94 45.44 27.74 68.60 1.90 47.34 16 27 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 28 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 29 H -0.27 -12.67 6.52 99.48 0.65 -12.02 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.11 0.76 7.72 -2.39 -0.02 0.74 16 33 H 0.25 3.64 8.06 -2.91 -0.02 3.62 16 34 H 0.12 0.77 7.76 -2.38 -0.02 0.75 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.41 9.32 8.60 -92.71 -0.80 8.52 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.36 16.02 5.66 -92.71 -0.52 15.49 16 48 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -83.73 396.89 1.34 -82.40 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: -0.40 Total: 30.45 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 8.64 Total: 21.74 kcal Atomic # 7 Polarization: -141.96 SS G_CDS: -7.78 Total: -149.74 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.02 Total: -32.19 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.34 kcal Total: -83.73 1.34 -82.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229435053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.217 kcal (2) G-P(sol) polarization free energy of solvation -83.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds