Wall clock time and date at job start Tue Mar 31 2020 20:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35967 * 116.99705 * 2 1 4 4 C 1.38729 * 119.96562 * 359.97438 * 3 2 1 5 5 C 1.38172 * 120.10873 * 179.97438 * 4 3 2 6 6 C 1.38700 * 120.03586 * 0.27026 * 5 4 3 7 7 N 1.40308 * 120.02949 * 179.74906 * 6 5 4 8 8 C 1.34770 * 120.00632 * 331.69757 * 7 6 5 9 9 C 1.50701 * 120.00117 * 184.03565 * 8 7 6 10 10 O 1.21305 * 119.99923 * 4.03355 * 8 7 6 11 11 C 1.39284 * 119.93178 * 359.51895 * 6 5 4 12 12 O 1.35966 * 120.05583 * 180.22971 * 11 6 5 13 13 C 1.42896 * 117.00021 * 185.82455 * 12 11 6 14 14 H 1.08994 * 109.47506 * 36.52221 * 13 12 11 15 15 C 1.50709 * 109.47049 * 276.52007 * 13 12 11 16 16 H 1.08003 * 119.99735 * 124.47646 * 15 13 12 17 17 C 1.37876 * 119.99676 * 304.47931 * 15 13 12 18 18 N 1.31523 * 119.99383 * 192.18543 * 17 15 13 19 19 Si 1.86794 * 120.00451 * 12.18711 * 17 15 13 20 20 H 1.48499 * 109.47243 * 90.26225 * 19 17 15 21 21 H 1.48500 * 109.47188 * 210.26154 * 19 17 15 22 22 H 1.48499 * 109.47081 * 330.25869 * 19 17 15 23 23 C 1.52999 * 109.46955 * 156.52212 * 13 12 11 24 24 N 1.46903 * 109.47130 * 195.67664 * 23 13 12 25 25 C 1.46903 * 109.47102 * 61.97522 * 24 23 13 26 26 C 1.46891 * 109.47159 * 181.97887 * 24 23 13 27 27 C 1.46900 * 109.46999 * 301.97730 * 24 23 13 28 28 C 1.38517 * 119.88923 * 0.45945 * 11 6 5 29 29 H 1.09000 * 109.47659 * 299.99684 * 1 2 3 30 30 H 1.09001 * 109.47384 * 60.00718 * 1 2 3 31 31 H 1.09006 * 109.46803 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.94357 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.97984 * 180.02562 * 5 4 3 34 34 H 0.97002 * 119.99221 * 151.69749 * 7 6 5 35 35 H 1.08996 * 109.47243 * 359.97438 * 9 8 7 36 36 H 1.09004 * 109.46919 * 120.00190 * 9 8 7 37 37 H 1.08996 * 109.47292 * 239.99555 * 9 8 7 38 38 H 0.96994 * 119.99305 * 180.02562 * 18 17 15 39 39 H 1.08991 * 109.47190 * 315.67777 * 23 13 12 40 40 H 1.09003 * 109.47015 * 75.67765 * 23 13 12 41 41 H 1.09000 * 109.46979 * 58.99510 * 25 24 23 42 42 H 1.09001 * 109.47043 * 178.99416 * 25 24 23 43 43 H 1.08997 * 109.46688 * 298.99223 * 25 24 23 44 44 H 1.09005 * 109.47841 * 59.99573 * 26 24 23 45 45 H 1.09000 * 109.47379 * 180.02562 * 26 24 23 46 46 H 1.09001 * 109.47277 * 299.99821 * 26 24 23 47 47 H 1.09001 * 109.47598 * 68.90359 * 27 24 23 48 48 H 1.08998 * 109.47424 * 188.90881 * 27 24 23 49 49 H 1.09004 * 109.47344 * 308.91036 * 27 24 23 50 50 H 1.08006 * 120.01502 * 179.78768 * 28 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2899 2.3745 -0.0005 5 6 1.9140 3.6072 0.0000 6 6 3.2989 3.6842 -0.0046 7 7 3.9325 4.9361 -0.0094 8 6 3.3183 6.0002 -0.5631 9 6 4.0350 7.3230 -0.6499 10 8 2.1885 5.8933 -0.9917 11 6 4.0598 2.5176 0.0004 12 8 5.4175 2.5902 0.0006 13 6 6.1330 1.3595 -0.1234 14 1 5.5970 0.6942 -0.8002 15 6 6.2519 0.7089 1.2309 16 1 5.8974 -0.3006 1.3780 17 6 6.8133 1.4026 2.2819 18 7 7.1377 0.7702 3.3886 19 14 7.1132 3.2404 2.1342 20 1 5.9182 3.9774 2.6180 21 1 8.2926 3.6170 2.9542 22 1 7.3672 3.5878 0.7129 23 6 7.5307 1.6361 -0.6808 24 7 8.1248 0.3803 -1.1584 25 6 7.3051 -0.1657 -2.2485 26 6 9.4848 0.6378 -1.6501 27 6 8.1783 -0.5872 -0.0542 28 6 3.4310 1.2834 0.0003 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2114 2.3162 -0.0014 33 1 1.3232 4.5113 0.0000 34 1 4.8127 5.0355 0.3859 35 1 5.0306 7.2259 -0.2170 36 1 4.1202 7.6223 -1.6946 37 1 3.4725 8.0778 -0.1005 38 1 7.5322 1.2583 4.1281 39 1 7.4587 2.3417 -1.5083 40 1 8.1577 2.0592 0.1041 41 1 7.2507 0.5595 -3.0604 42 1 7.7557 -1.0882 -2.6148 43 1 6.3010 -0.3735 -1.8789 44 1 10.0930 1.0430 -0.8413 45 1 9.9254 -0.2939 -2.0049 46 1 9.4451 1.3556 -2.4694 47 1 7.1665 -0.8984 0.2056 48 1 8.7585 -1.4573 -0.3613 49 1 8.6496 -0.1236 0.8125 50 1 4.0191 0.3774 0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230389669.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:49 Heat of formation + Delta-G solvation = 43.290787 kcal Electronic energy + Delta-G solvation = -31742.314099 eV Core-core repulsion = 27662.196287 eV Total energy + Delta-G solvation = -4080.117811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.54013 -41.58513 -40.28523 -39.65004 -37.35262 -35.13659 -34.64683 -32.47789 -31.62787 -30.78453 -30.52439 -30.21198 -28.95548 -28.10467 -27.56972 -24.96032 -24.25935 -22.89290 -22.47073 -21.21157 -20.32428 -18.82058 -18.67178 -18.56788 -18.40756 -17.88785 -17.75567 -17.07254 -16.63988 -16.53607 -16.37913 -15.98204 -15.57587 -15.37353 -15.06562 -14.97048 -14.78631 -14.61718 -14.28970 -14.28208 -14.18064 -14.13226 -13.83531 -13.70686 -13.64254 -13.48483 -13.34274 -13.25935 -13.00069 -12.90670 -12.48119 -12.22005 -12.08668 -12.05464 -11.74797 -11.11748 -10.91825 -10.73726 -10.42932 -10.27287 -9.13118 -8.24352 -7.91154 -6.11395 0.11633 0.63920 0.74387 1.72247 1.78750 1.78944 1.98160 2.11277 2.22393 2.25377 2.29605 2.54327 2.73696 2.74966 3.03787 3.09052 3.11601 3.24446 3.38404 3.48187 3.56438 3.60592 3.65300 3.82994 3.86365 3.88508 3.96376 4.13222 4.20020 4.22787 4.35988 4.41595 4.43109 4.46951 4.48009 4.62388 4.71011 4.73080 4.81855 4.90817 4.98801 5.16050 5.43857 5.50096 5.70880 5.74654 5.97767 6.42052 6.58119 6.62800 6.76902 7.02977 7.31214 7.63169 9.15097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.147 3.853 4 C -0.231 4.231 5 C -0.056 4.056 6 C 0.066 3.934 7 N -0.659 5.659 8 C 0.508 3.492 9 C -0.170 4.170 10 O -0.534 6.534 11 C 0.165 3.835 12 O -0.320 6.320 13 C 0.161 3.839 14 H 0.066 0.934 15 C -0.589 4.589 16 H 0.098 0.902 17 C 0.095 3.905 18 N -0.840 5.840 19 Si 0.882 3.118 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.254 1.254 23 C -0.002 4.002 24 N -0.256 5.256 25 C -0.049 4.049 26 C -0.040 4.040 27 C -0.036 4.036 28 C -0.206 4.206 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.154 0.846 34 H 0.410 0.590 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.282 0.718 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.123 0.877 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.112 0.888 47 H 0.148 0.852 48 H 0.093 0.907 49 H 0.126 0.874 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.420 -3.335 -13.099 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.101 3.899 4 C -0.251 4.251 5 C -0.076 4.076 6 C -0.028 4.028 7 N -0.304 5.304 8 C 0.296 3.704 9 C -0.230 4.230 10 O -0.411 6.411 11 C 0.117 3.883 12 O -0.235 6.235 13 C 0.106 3.894 14 H 0.083 0.917 15 C -0.624 4.624 16 H 0.115 0.885 17 C -0.118 4.118 18 N -0.470 5.470 19 Si 0.711 3.289 20 H -0.193 1.193 21 H -0.220 1.220 22 H -0.180 1.180 23 C -0.123 4.123 24 N 0.085 4.915 25 C -0.191 4.191 26 C -0.181 4.181 27 C -0.176 4.176 28 C -0.225 4.225 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.147 0.853 33 H 0.172 0.828 34 H 0.246 0.754 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.142 0.858 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.131 0.869 47 H 0.166 0.834 48 H 0.111 0.889 49 H 0.144 0.856 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.935 -3.400 -13.179 16.282 hybrid contribution 0.257 1.052 0.571 1.224 sum 9.192 -2.348 -12.609 15.779 Atomic orbital electron populations 1.23061 0.78298 1.03888 1.01510 1.86059 1.21408 1.26922 1.88590 1.18764 0.91729 0.84117 0.95244 1.21055 1.00140 0.91658 1.12209 1.21095 0.91981 0.98764 0.95787 1.17055 0.91224 0.82744 1.11805 1.43483 1.21721 1.07219 1.58014 1.20959 0.86844 0.85952 0.76607 1.21858 1.01392 0.94336 1.05411 1.90671 1.18437 1.84403 1.47603 1.18111 0.82492 0.91499 0.96191 1.85984 1.14544 1.35934 1.87019 1.20678 0.85855 0.83247 0.99618 0.91687 1.21135 1.45652 1.03043 0.92565 0.88451 1.25017 0.93060 0.98803 0.94926 1.69859 1.34923 1.37354 1.04887 0.86939 0.78906 0.84915 0.78159 1.19275 1.21966 1.18000 1.24307 1.01342 0.83012 1.03679 1.45738 1.14009 1.16226 1.15550 1.24145 1.00170 1.03856 0.90918 1.24045 0.81739 1.07402 1.04957 1.24596 1.11395 0.92204 0.89419 1.20207 0.92005 0.97511 1.12817 0.92508 0.92636 0.88269 0.85268 0.82838 0.75414 0.90512 0.88286 0.88285 0.90705 0.87250 0.85496 0.86914 0.86519 0.85849 0.86416 0.86459 0.86930 0.83441 0.88876 0.85592 0.83579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 9.81 101.05 0.99 1.02 16 2 O -0.32 -1.37 10.50 -19.64 -0.21 -1.58 16 3 C 0.15 0.75 6.68 -39.24 -0.26 0.48 16 4 C -0.23 -1.12 9.03 -39.42 -0.36 -1.48 16 5 C -0.06 -0.33 8.76 -39.43 -0.35 -0.68 16 6 C 0.07 0.36 6.43 -83.42 -0.54 -0.18 16 7 N -0.66 -2.39 5.26 -9.71 -0.05 -2.44 16 8 C 0.51 1.78 7.82 -10.99 -0.09 1.69 16 9 C -0.17 0.14 10.39 36.01 0.37 0.51 16 10 O -0.53 -3.75 14.16 5.54 0.08 -3.67 16 11 C 0.16 0.75 6.60 -39.09 -0.26 0.49 16 12 O -0.32 -0.79 5.67 -19.63 -0.11 -0.90 16 13 C 0.16 -0.15 1.50 -27.88 -0.04 -0.19 16 14 H 0.07 -0.19 3.98 -51.93 -0.21 -0.40 16 15 C -0.59 -2.17 5.17 -34.44 -0.18 -2.35 16 16 H 0.10 0.58 7.22 -52.48 -0.38 0.20 16 17 C 0.09 0.67 5.08 -17.82 -0.09 0.58 16 18 N -0.84 -8.81 13.96 55.43 0.77 -8.04 16 19 Si 0.88 5.13 24.38 -169.99 -4.14 0.99 16 20 H -0.27 -2.26 7.11 56.52 0.40 -1.86 16 21 H -0.29 -2.20 7.11 56.52 0.40 -1.80 16 22 H -0.25 -0.48 5.01 56.52 0.28 -0.19 16 23 C 0.00 0.01 2.96 -3.82 -0.01 0.00 16 24 N -0.26 2.73 0.05 -395.63 -0.02 2.71 16 25 C -0.05 0.60 7.72 60.07 0.46 1.07 16 26 C -0.04 0.53 8.00 60.06 0.48 1.02 16 27 C -0.04 0.29 6.74 60.06 0.40 0.70 16 28 C -0.21 -0.93 8.61 -39.32 -0.34 -1.27 16 29 H 0.06 0.03 7.66 -51.93 -0.40 -0.36 16 30 H 0.06 0.00 7.66 -51.93 -0.40 -0.40 16 31 H 0.10 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.13 0.38 6.28 -52.48 -0.33 0.05 16 33 H 0.15 1.01 5.72 -52.49 -0.30 0.71 16 34 H 0.41 0.89 8.25 -40.82 -0.34 0.55 16 35 H 0.08 -0.21 7.92 -51.93 -0.41 -0.62 16 36 H 0.10 -0.17 8.14 -51.93 -0.42 -0.59 16 37 H 0.10 -0.13 8.14 -51.93 -0.42 -0.55 16 38 H 0.28 2.99 8.31 -40.82 -0.34 2.65 16 39 H 0.11 -0.87 8.12 -51.93 -0.42 -1.29 16 40 H 0.13 -0.55 4.90 -51.93 -0.25 -0.80 16 41 H 0.11 -1.51 8.13 -51.93 -0.42 -1.93 16 42 H 0.12 -1.67 8.14 -51.93 -0.42 -2.09 16 43 H 0.12 -1.31 5.88 -51.93 -0.31 -1.61 16 44 H 0.12 -1.52 8.14 -51.93 -0.42 -1.94 16 45 H 0.12 -1.77 8.08 -51.93 -0.42 -2.19 16 46 H 0.11 -1.64 8.14 -51.93 -0.42 -2.06 16 47 H 0.15 -0.81 5.11 -51.93 -0.27 -1.07 16 48 H 0.09 -1.02 8.01 -51.93 -0.42 -1.44 16 49 H 0.13 -0.65 7.50 -51.93 -0.39 -1.04 16 50 H 0.15 0.49 5.65 -52.48 -0.30 0.19 16 LS Contribution 377.72 15.07 5.69 5.69 Total: 0.00 -20.74 377.72 -5.52 -26.26 By element: Atomic # 1 Polarization: -12.68 SS G_CDS: -7.74 Total: -20.42 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 0.21 Total: 1.41 kcal Atomic # 7 Polarization: -8.47 SS G_CDS: 0.70 Total: -7.77 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.24 Total: -6.16 kcal Atomic # 14 Polarization: 5.13 SS G_CDS: -4.14 Total: 0.99 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -20.74 -5.52 -26.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230389669.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.548 kcal (2) G-P(sol) polarization free energy of solvation -20.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds