Wall clock time and date at job start Tue Mar 31 2020 20:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35967 * 116.99705 * 2 1 4 4 C 1.38729 * 119.96562 * 359.97438 * 3 2 1 5 5 C 1.38172 * 120.10873 * 179.97438 * 4 3 2 6 6 C 1.38700 * 120.03586 * 0.27026 * 5 4 3 7 7 N 1.40308 * 120.02949 * 179.74906 * 6 5 4 8 8 C 1.34770 * 120.00632 * 331.69757 * 7 6 5 9 9 C 1.50701 * 120.00117 * 184.03565 * 8 7 6 10 10 O 1.21305 * 119.99923 * 4.03355 * 8 7 6 11 11 C 1.39284 * 119.93178 * 359.51895 * 6 5 4 12 12 O 1.35966 * 120.05583 * 180.22971 * 11 6 5 13 13 C 1.42896 * 117.00021 * 185.82455 * 12 11 6 14 14 H 1.08994 * 109.47506 * 36.52221 * 13 12 11 15 15 C 1.50709 * 109.47049 * 276.52007 * 13 12 11 16 16 H 1.08003 * 119.99735 * 124.47646 * 15 13 12 17 17 C 1.37876 * 119.99676 * 304.47931 * 15 13 12 18 18 N 1.31523 * 119.99383 * 192.18543 * 17 15 13 19 19 Si 1.86794 * 120.00451 * 12.18711 * 17 15 13 20 20 H 1.48499 * 109.47243 * 90.26225 * 19 17 15 21 21 H 1.48500 * 109.47188 * 210.26154 * 19 17 15 22 22 H 1.48499 * 109.47081 * 330.25869 * 19 17 15 23 23 C 1.52999 * 109.46955 * 156.52212 * 13 12 11 24 24 N 1.46903 * 109.47130 * 195.67664 * 23 13 12 25 25 C 1.46903 * 109.47102 * 61.97522 * 24 23 13 26 26 C 1.46891 * 109.47159 * 181.97887 * 24 23 13 27 27 C 1.46900 * 109.46999 * 301.97730 * 24 23 13 28 28 C 1.38517 * 119.88923 * 0.45945 * 11 6 5 29 29 H 1.09000 * 109.47659 * 299.99684 * 1 2 3 30 30 H 1.09001 * 109.47384 * 60.00718 * 1 2 3 31 31 H 1.09006 * 109.46803 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.94357 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.97984 * 180.02562 * 5 4 3 34 34 H 0.97002 * 119.99221 * 151.69749 * 7 6 5 35 35 H 1.08996 * 109.47243 * 359.97438 * 9 8 7 36 36 H 1.09004 * 109.46919 * 120.00190 * 9 8 7 37 37 H 1.08996 * 109.47292 * 239.99555 * 9 8 7 38 38 H 0.96994 * 119.99305 * 180.02562 * 18 17 15 39 39 H 1.08991 * 109.47190 * 315.67777 * 23 13 12 40 40 H 1.09003 * 109.47015 * 75.67765 * 23 13 12 41 41 H 1.09000 * 109.46979 * 58.99510 * 25 24 23 42 42 H 1.09001 * 109.47043 * 178.99416 * 25 24 23 43 43 H 1.08997 * 109.46688 * 298.99223 * 25 24 23 44 44 H 1.09005 * 109.47841 * 59.99573 * 26 24 23 45 45 H 1.09000 * 109.47379 * 180.02562 * 26 24 23 46 46 H 1.09001 * 109.47277 * 299.99821 * 26 24 23 47 47 H 1.09001 * 109.47598 * 68.90359 * 27 24 23 48 48 H 1.08998 * 109.47424 * 188.90881 * 27 24 23 49 49 H 1.09004 * 109.47344 * 308.91036 * 27 24 23 50 50 H 1.08006 * 120.01502 * 179.78768 * 28 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2899 2.3745 -0.0005 5 6 1.9140 3.6072 0.0000 6 6 3.2989 3.6842 -0.0046 7 7 3.9325 4.9361 -0.0094 8 6 3.3183 6.0002 -0.5631 9 6 4.0350 7.3230 -0.6499 10 8 2.1885 5.8933 -0.9917 11 6 4.0598 2.5176 0.0004 12 8 5.4175 2.5902 0.0006 13 6 6.1330 1.3595 -0.1234 14 1 5.5970 0.6942 -0.8002 15 6 6.2519 0.7089 1.2309 16 1 5.8974 -0.3006 1.3780 17 6 6.8133 1.4026 2.2819 18 7 7.1377 0.7702 3.3886 19 14 7.1132 3.2404 2.1342 20 1 5.9182 3.9774 2.6180 21 1 8.2926 3.6170 2.9542 22 1 7.3672 3.5878 0.7129 23 6 7.5307 1.6361 -0.6808 24 7 8.1248 0.3803 -1.1584 25 6 7.3051 -0.1657 -2.2485 26 6 9.4848 0.6378 -1.6501 27 6 8.1783 -0.5872 -0.0542 28 6 3.4310 1.2834 0.0003 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2114 2.3162 -0.0014 33 1 1.3232 4.5113 0.0000 34 1 4.8127 5.0355 0.3859 35 1 5.0306 7.2259 -0.2170 36 1 4.1202 7.6223 -1.6946 37 1 3.4725 8.0778 -0.1005 38 1 7.5322 1.2583 4.1281 39 1 7.4587 2.3417 -1.5083 40 1 8.1577 2.0592 0.1041 41 1 7.2507 0.5595 -3.0604 42 1 7.7557 -1.0882 -2.6148 43 1 6.3010 -0.3735 -1.8789 44 1 10.0930 1.0430 -0.8413 45 1 9.9254 -0.2939 -2.0049 46 1 9.4451 1.3556 -2.4694 47 1 7.1665 -0.8984 0.2056 48 1 8.7585 -1.4573 -0.3613 49 1 8.6496 -0.1236 0.8125 50 1 4.0191 0.3774 0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230389669.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:47 Heat of formation + Delta-G solvation = 32.481576 kcal Electronic energy + Delta-G solvation = -31742.782821 eV Core-core repulsion = 27662.196287 eV Total energy + Delta-G solvation = -4080.586534 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.196 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.88513 -41.83918 -40.56328 -39.85135 -37.62662 -35.45959 -35.02952 -32.48570 -31.83535 -30.90446 -29.60789 -29.57930 -29.08896 -27.93147 -27.68392 -25.07841 -24.07840 -23.03283 -22.50989 -21.48394 -20.43529 -18.98703 -18.61881 -18.15671 -18.11867 -17.89796 -17.56188 -17.12127 -16.77314 -16.72411 -16.60946 -16.19793 -15.79516 -15.36315 -15.27347 -15.00788 -14.56001 -14.53497 -14.17794 -13.90448 -13.72190 -13.64611 -13.50327 -13.32345 -13.30317 -13.22405 -13.15665 -13.09895 -13.07810 -12.94467 -12.63558 -12.56812 -12.29981 -12.24149 -11.99567 -11.40155 -11.18195 -11.04695 -10.86981 -10.71422 -9.48431 -8.58803 -8.47346 -6.60486 0.27224 0.36514 0.85281 1.23457 1.42613 1.47990 1.54014 2.06074 2.16473 2.24107 2.40175 2.73945 2.83898 3.00928 3.06620 3.30341 3.68713 3.75453 3.88841 3.96057 4.04819 4.16461 4.21949 4.25581 4.30438 4.35591 4.37260 4.38706 4.40814 4.45794 4.52806 4.58894 4.61053 4.62998 4.66572 4.71848 4.75106 4.80928 4.82844 4.86491 5.01639 5.12460 5.17158 5.26034 5.36339 5.38342 5.63449 5.92660 6.27832 6.38197 6.44339 6.58724 7.07368 7.14231 8.60968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.330 6.330 3 C 0.139 3.861 4 C -0.236 4.236 5 C -0.072 4.072 6 C 0.050 3.950 7 N -0.655 5.655 8 C 0.502 3.498 9 C -0.163 4.163 10 O -0.575 6.575 11 C 0.163 3.837 12 O -0.319 6.319 13 C 0.150 3.850 14 H 0.091 0.909 15 C -0.546 4.546 16 H 0.070 0.930 17 C 0.057 3.943 18 N -0.904 5.904 19 Si 0.905 3.095 20 H -0.306 1.306 21 H -0.321 1.321 22 H -0.185 1.185 23 C 0.005 3.995 24 N -0.244 5.244 25 C -0.056 4.056 26 C -0.045 4.045 27 C -0.032 4.032 28 C -0.213 4.213 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.417 0.583 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.266 0.734 39 H 0.149 0.851 40 H 0.111 0.889 41 H 0.136 0.864 42 H 0.145 0.855 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.142 0.858 46 H 0.135 0.865 47 H 0.115 0.885 48 H 0.130 0.870 49 H 0.093 0.907 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.884 -3.188 -16.796 20.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.244 6.244 3 C 0.093 3.907 4 C -0.256 4.256 5 C -0.092 4.092 6 C -0.044 4.044 7 N -0.301 5.301 8 C 0.293 3.707 9 C -0.222 4.222 10 O -0.455 6.455 11 C 0.115 3.885 12 O -0.233 6.233 13 C 0.096 3.904 14 H 0.109 0.891 15 C -0.583 4.583 16 H 0.088 0.912 17 C -0.148 4.148 18 N -0.539 5.539 19 Si 0.736 3.264 20 H -0.234 1.234 21 H -0.251 1.251 22 H -0.108 1.108 23 C -0.117 4.117 24 N 0.098 4.902 25 C -0.196 4.196 26 C -0.185 4.185 27 C -0.174 4.174 28 C -0.233 4.233 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.254 0.746 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.076 0.924 39 H 0.166 0.834 40 H 0.129 0.871 41 H 0.154 0.846 42 H 0.163 0.837 43 H 0.121 0.879 44 H 0.128 0.872 45 H 0.160 0.840 46 H 0.154 0.846 47 H 0.134 0.866 48 H 0.148 0.852 49 H 0.112 0.888 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.426 -3.245 -16.943 20.157 hybrid contribution -0.295 0.873 1.662 1.900 sum 10.131 -2.371 -15.282 18.488 Atomic orbital electron populations 1.23318 0.76630 1.05485 1.02085 1.86041 1.23222 1.26603 1.88509 1.18907 0.92089 0.84458 0.95294 1.21212 1.00974 0.91361 1.12006 1.21112 0.92515 0.98727 0.96854 1.17245 0.91372 0.83894 1.11895 1.43546 1.21898 1.06786 1.57860 1.21789 0.86477 0.87019 0.75400 1.21910 1.02152 0.91521 1.06643 1.90651 1.20362 1.85117 1.49354 1.18143 0.83363 0.91164 0.95824 1.85969 1.13627 1.36955 1.86772 1.20967 0.88958 0.82855 0.97664 0.89109 1.21294 1.41251 1.01610 0.94140 0.91216 1.25492 0.93753 1.00643 0.94946 1.70008 1.39638 1.38028 1.06245 0.86605 0.75856 0.82532 0.81434 1.23361 1.25087 1.10775 1.23958 0.96921 0.86067 1.04744 1.45592 1.15737 1.13642 1.15233 1.24366 0.99000 1.05907 0.90328 1.24312 0.79434 1.09494 1.05263 1.24307 1.09560 0.93705 0.89780 1.20377 0.92192 0.97879 1.12862 0.92393 0.91589 0.86225 0.83909 0.83994 0.74592 0.88024 0.86922 0.87699 0.92417 0.83371 0.87066 0.84614 0.83707 0.87908 0.87150 0.83977 0.84615 0.86630 0.85188 0.88837 0.82938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.81 113.37 1.11 1.15 16 2 O -0.33 -3.06 10.50 -93.18 -0.98 -4.04 16 3 C 0.14 1.54 6.68 22.49 0.15 1.69 16 4 C -0.24 -2.59 9.03 22.37 0.20 -2.39 16 5 C -0.07 -0.97 8.76 22.36 0.20 -0.77 16 6 C 0.05 0.59 6.43 38.15 0.25 0.83 16 7 N -0.66 -4.82 5.26 -303.01 -1.60 -6.42 16 8 C 0.50 3.56 7.82 87.66 0.69 4.25 16 9 C -0.16 0.49 10.39 71.24 0.74 1.23 16 10 O -0.57 -8.73 14.16 -3.11 -0.04 -8.77 16 11 C 0.16 1.53 6.60 22.59 0.15 1.68 16 12 O -0.32 -1.33 5.67 -93.17 -0.53 -1.86 16 13 C 0.15 -0.37 1.50 29.85 0.04 -0.33 16 14 H 0.09 -0.63 3.98 -2.39 -0.01 -0.64 16 15 C -0.55 -5.00 5.17 25.60 0.13 -4.87 16 16 H 0.07 1.03 7.22 -2.91 -0.02 1.01 16 17 C 0.06 0.97 5.08 84.65 0.43 1.40 16 18 N -0.90 -23.04 13.96 21.45 0.30 -22.74 16 19 Si 0.91 11.77 24.38 68.60 1.67 13.45 16 20 H -0.31 -5.94 7.11 99.48 0.71 -5.24 16 21 H -0.32 -5.70 7.11 99.48 0.71 -5.00 16 22 H -0.19 -0.25 5.01 99.48 0.50 0.25 16 23 C 0.01 -0.08 2.96 86.30 0.26 0.18 16 24 N -0.24 5.77 0.05 ******* -0.07 5.70 16 25 C -0.06 1.54 7.72 127.69 0.99 2.53 16 26 C -0.05 1.37 8.00 127.69 1.02 2.39 16 27 C -0.03 0.53 6.74 127.69 0.86 1.39 16 28 C -0.21 -2.10 8.61 22.44 0.19 -1.91 16 29 H 0.06 0.09 7.66 -2.39 -0.02 0.07 16 30 H 0.07 -0.02 7.66 -2.39 -0.02 -0.04 16 31 H 0.12 -0.31 8.14 -2.38 -0.02 -0.33 16 32 H 0.14 0.99 6.28 -2.91 -0.02 0.97 16 33 H 0.14 2.21 5.72 -2.91 -0.02 2.19 16 34 H 0.42 1.59 8.25 -92.71 -0.77 0.82 16 35 H 0.10 -0.81 7.92 -2.39 -0.02 -0.83 16 36 H 0.11 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.27 7.06 8.31 -92.71 -0.77 6.29 16 39 H 0.15 -3.09 8.12 -2.39 -0.02 -3.11 16 40 H 0.11 -1.15 4.90 -2.39 -0.01 -1.16 16 41 H 0.14 -4.27 8.13 -2.39 -0.02 -4.29 16 42 H 0.14 -4.74 8.14 -2.39 -0.02 -4.76 16 43 H 0.10 -2.36 5.88 -2.39 -0.01 -2.37 16 44 H 0.11 -3.08 8.14 -2.38 -0.02 -3.10 16 45 H 0.14 -4.91 8.08 -2.39 -0.02 -4.93 16 46 H 0.14 -4.62 8.14 -2.39 -0.02 -4.64 16 47 H 0.12 -1.12 5.11 -2.39 -0.01 -1.13 16 48 H 0.13 -3.07 8.01 -2.39 -0.02 -3.09 16 49 H 0.09 -0.82 7.50 -2.38 -0.02 -0.83 16 50 H 0.15 1.14 5.65 -2.91 -0.02 1.12 16 Total: 0.00 -56.17 377.72 6.15 -50.02 By element: Atomic # 1 Polarization: -33.77 SS G_CDS: -0.01 Total: -33.78 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 7.40 Total: 8.44 kcal Atomic # 7 Polarization: -22.09 SS G_CDS: -1.36 Total: -23.46 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -1.55 Total: -14.67 kcal Atomic # 14 Polarization: 11.77 SS G_CDS: 1.67 Total: 13.45 kcal Total: -56.17 6.15 -50.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230389669.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.501 kcal (2) G-P(sol) polarization free energy of solvation -56.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds