Wall clock time and date at job start Tue Mar 31 2020 21:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41599 * 114.00236 * 2 1 4 4 C 1.34779 * 120.00397 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99823 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00286 * 179.97438 * 4 3 2 7 7 C 1.53116 * 109.52399 * 179.97438 * 6 4 3 8 8 C 1.53039 * 109.28072 * 177.56077 * 7 6 4 9 9 N 1.46846 * 109.52163 * 300.81719 * 8 7 6 10 10 C 1.38577 * 111.00206 * 185.83768 * 9 8 7 11 11 N 1.31213 * 126.47381 * 297.97799 * 10 9 8 12 12 N 1.28535 * 109.86052 * 179.69389 * 11 10 9 13 13 C 1.30288 * 110.05178 * 0.45423 * 12 11 10 14 14 C 1.50700 * 126.34940 * 179.82644 * 13 12 11 15 15 C 1.53001 * 109.46979 * 269.68659 * 14 13 12 16 16 C 1.50694 * 109.47394 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99869 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00429 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00250 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99680 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46961 * 89.99908 * 20 18 16 22 22 H 1.48501 * 109.47022 * 210.00056 * 20 18 16 23 23 H 1.48498 * 109.47127 * 330.00222 * 20 18 16 24 24 N 1.36456 * 126.47023 * 117.93754 * 10 9 8 25 25 C 1.46490 * 127.14118 * 0.02562 * 24 10 9 26 26 C 1.46855 * 111.19748 * 61.74401 * 9 8 7 27 27 C 1.53040 * 109.51900 * 298.25792 * 26 9 8 28 28 H 1.09006 * 109.46718 * 60.00746 * 1 2 3 29 29 H 1.08998 * 109.47033 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47276 * 300.00511 * 1 2 3 31 31 H 0.96997 * 120.00001 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.57838 * 59.84028 * 6 4 3 33 33 H 1.09002 * 109.50588 * 57.61896 * 7 6 4 34 34 H 1.09007 * 109.50259 * 297.49787 * 7 6 4 35 35 H 1.08996 * 109.46261 * 180.80417 * 8 7 6 36 36 H 1.08998 * 109.46283 * 60.83194 * 8 7 6 37 37 H 1.08997 * 109.47683 * 149.68343 * 14 13 12 38 38 H 1.09002 * 109.46992 * 29.68036 * 14 13 12 39 39 H 1.09008 * 109.46994 * 59.99823 * 15 14 13 40 40 H 1.09003 * 109.47220 * 300.00135 * 15 14 13 41 41 H 0.97003 * 120.00048 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.47746 * 265.45224 * 25 24 10 43 43 H 1.09005 * 109.46808 * 25.45010 * 25 24 10 44 44 H 1.09001 * 109.47189 * 145.45022 * 25 24 10 45 45 H 1.08998 * 109.46516 * 58.27075 * 26 9 8 46 46 H 1.09001 * 109.46089 * 178.24420 * 26 9 8 47 47 H 1.09006 * 109.50351 * 299.23370 * 27 26 9 48 48 H 1.09008 * 109.50091 * 179.12443 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 3.3454 1.4345 0.0005 5 8 4.0582 0.4533 0.0015 6 6 3.9583 2.8111 -0.0001 7 6 5.4848 2.6916 0.0014 8 6 6.1013 4.0909 -0.0607 9 7 5.6471 4.7736 -1.2789 10 6 6.2880 5.9926 -1.4334 11 7 6.2240 7.0166 -0.6156 12 7 6.9466 7.9800 -1.0648 13 6 7.5021 7.6341 -2.1914 14 6 8.4175 8.4843 -3.0341 15 6 7.5883 9.2799 -4.0442 16 6 8.5035 10.1306 -4.8865 17 1 9.5700 10.1066 -4.7179 18 6 7.9794 10.9405 -5.8716 19 7 8.7781 11.6833 -6.6063 20 14 6.1345 10.9837 -6.1617 21 1 5.5249 12.0404 -5.3149 22 1 5.8651 11.2786 -7.5920 23 1 5.5470 9.6663 -5.8087 24 7 7.1053 6.3543 -2.4645 25 6 7.4802 5.5404 -3.6233 26 6 4.1883 4.9422 -1.2806 27 6 3.5147 3.5682 -1.2549 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.4349 2.0783 -0.0004 32 1 3.6351 3.3552 0.8874 33 1 5.8054 2.1139 -0.8656 34 1 5.8098 2.1909 0.9135 35 1 7.1881 4.0087 -0.0743 36 1 5.7914 4.6634 0.8135 37 1 9.1211 7.8438 -3.5658 38 1 8.9668 9.1731 -2.3922 39 1 6.8846 9.9205 -3.5123 40 1 7.0389 8.5912 -4.6860 41 1 8.4093 12.2533 -7.2992 42 1 8.4276 5.0393 -3.4244 43 1 6.7070 4.7948 -3.8091 44 1 7.5849 6.1812 -4.4988 45 1 3.8873 5.5107 -0.4006 46 1 3.8857 5.4782 -2.1802 47 1 3.8043 3.0043 -2.1416 48 1 2.4320 3.6939 -1.2404 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262902910.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:20 Heat of formation + Delta-G solvation = 50.621996 kcal Electronic energy + Delta-G solvation = -29187.292301 eV Core-core repulsion = 25088.014974 eV Total energy + Delta-G solvation = -4099.277327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.75158 -40.52935 -38.76711 -37.52091 -34.95127 -34.55296 -33.67535 -32.59296 -31.73083 -31.25249 -28.91309 -27.51191 -27.15356 -25.80667 -25.19932 -23.60170 -22.15320 -21.54671 -20.90926 -20.21646 -19.79473 -18.69384 -17.63664 -17.36786 -16.84803 -16.30219 -16.21621 -16.02365 -15.30525 -15.07179 -14.98250 -14.61782 -14.36784 -14.18474 -13.95575 -13.62753 -13.53026 -13.39366 -13.16845 -12.80564 -12.73484 -12.69198 -12.50510 -11.98089 -11.76362 -11.64452 -11.60669 -11.39803 -11.26506 -11.09912 -11.03162 -10.52131 -10.42539 -10.21810 -10.05935 -9.89305 -9.87976 -9.39523 -9.33188 -8.93879 -8.62062 -8.61833 -6.12734 -4.12407 1.42022 1.92476 2.19779 2.37301 3.09116 3.26245 3.33609 3.36073 3.57918 3.90324 4.08878 4.20099 4.27425 4.37906 4.56147 4.60375 4.67959 4.74522 4.79040 4.90460 4.93514 4.94942 4.98013 5.11723 5.20613 5.22473 5.22690 5.35828 5.38971 5.45670 5.51053 5.56257 5.63497 5.74597 5.96060 6.15443 6.19157 6.25857 6.27017 6.46492 6.49041 6.76496 6.77782 7.09177 7.22047 7.32205 7.65708 7.81090 8.41224 8.90473 8.99538 9.48713 11.00075 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020168 B = 0.002164 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.987798 B =12936.792570 C =13667.341369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.149 6.149 3 N -0.602 5.602 4 C 0.531 3.469 5 O -0.517 6.517 6 C -0.096 4.096 7 C -0.094 4.094 8 C 0.068 3.932 9 N -0.461 5.461 10 C 0.318 3.682 11 N -0.312 5.312 12 N -0.296 5.296 13 C 0.212 3.788 14 C -0.023 4.023 15 C -0.004 4.004 16 C -0.524 4.524 17 H 0.076 0.924 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.878 3.122 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.268 1.268 24 N -0.466 5.466 25 C 0.078 3.922 26 C 0.068 3.932 27 C -0.108 4.108 28 H 0.056 0.944 29 H 0.111 0.889 30 H 0.056 0.944 31 H 0.407 0.593 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.021 0.979 40 H 0.013 0.987 41 H 0.264 0.736 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.058 0.942 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.495 -22.414 12.195 29.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.152 6.152 3 N -0.306 5.306 4 C 0.318 3.682 5 O -0.390 6.390 6 C -0.118 4.118 7 C -0.133 4.133 8 C -0.059 4.059 9 N -0.187 5.187 10 C -0.038 4.038 11 N -0.156 5.156 12 N -0.136 5.136 13 C -0.055 4.055 14 C -0.063 4.063 15 C -0.042 4.042 16 C -0.561 4.561 17 H 0.094 0.906 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.706 3.294 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.193 1.193 24 N -0.158 5.158 25 C -0.065 4.065 26 C -0.059 4.059 27 C -0.147 4.147 28 H 0.075 0.925 29 H 0.129 0.871 30 H 0.074 0.926 31 H 0.247 0.753 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.039 0.961 40 H 0.031 0.969 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.076 0.924 46 H 0.101 0.899 47 H 0.102 0.898 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.111 -22.693 12.826 30.130 hybrid contribution -1.631 0.096 -0.825 1.830 sum -16.742 -22.597 12.001 30.577 Atomic orbital electron populations 1.23302 0.80452 1.04707 1.01316 1.90597 1.20150 1.07141 1.97317 1.47787 1.05781 0.98547 1.78487 1.20841 0.79515 0.91990 0.75817 1.90745 1.60108 1.40161 1.48003 1.21421 0.97789 0.91394 1.01210 1.21473 0.91128 0.96083 1.04587 1.22156 1.00646 0.93634 0.89450 1.58498 1.06085 1.14280 1.39818 1.22074 0.98747 0.93571 0.89391 1.74484 1.18745 0.97944 1.24422 1.74063 1.10118 1.20687 1.08762 1.25671 1.00691 0.83174 0.95973 1.20255 0.94651 0.95727 0.95700 1.19544 0.96070 0.95158 0.93446 1.21005 0.95041 1.23807 1.16295 0.90565 1.24970 0.97758 0.94866 0.95509 1.69898 1.35016 1.26968 1.21778 0.86805 0.86281 0.78989 0.77352 1.20063 1.21288 1.19330 1.46245 1.36432 1.13467 1.19657 1.22055 1.02149 0.95805 0.86478 1.22106 0.84397 0.96464 1.02969 1.21679 0.99933 0.95635 0.97406 0.92508 0.87068 0.92558 0.75329 0.87697 0.89666 0.89772 0.89905 0.92584 0.90445 0.88608 0.96099 0.96854 0.92571 0.90345 0.88923 0.88652 0.92394 0.89873 0.89783 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 11.30 101.05 1.14 1.14 16 2 O -0.15 -1.30 11.47 -29.66 -0.34 -1.64 16 3 N -0.60 -4.23 6.30 31.22 0.20 -4.04 16 4 C 0.53 4.88 7.30 -10.99 -0.08 4.80 16 5 O -0.52 -7.16 16.38 -12.63 -0.21 -7.37 16 6 C -0.10 -0.64 2.59 -91.65 -0.24 -0.88 16 7 C -0.09 -0.77 4.68 -26.65 -0.12 -0.89 16 8 C 0.07 0.66 5.38 -3.83 -0.02 0.64 16 9 N -0.46 -5.12 4.65 -174.55 -0.81 -5.94 16 10 C 0.32 4.79 6.41 -318.88 -2.04 2.74 16 11 N -0.31 -5.62 12.19 30.31 0.37 -5.25 16 12 N -0.30 -5.95 12.18 32.99 0.40 -5.55 16 13 C 0.21 3.90 7.32 -154.01 -1.13 2.77 16 14 C -0.02 -0.45 5.45 -27.88 -0.15 -0.60 16 15 C 0.00 -0.08 4.02 -27.89 -0.11 -0.20 16 16 C -0.52 -14.21 9.66 -34.44 -0.33 -14.54 16 17 H 0.08 2.19 7.99 -52.48 -0.42 1.77 16 18 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 19 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 20 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 24 N -0.47 -7.18 3.21 -121.46 -0.39 -7.57 16 25 C 0.08 0.90 10.88 59.84 0.65 1.55 16 26 C 0.07 0.62 5.38 -3.83 -0.02 0.60 16 27 C -0.11 -0.66 5.26 -26.65 -0.14 -0.80 16 28 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.41 1.32 8.03 -40.82 -0.33 1.00 16 32 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 34 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 35 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 1.32 7.97 -51.93 -0.41 0.91 16 38 H 0.10 1.84 8.14 -51.93 -0.42 1.41 16 39 H 0.02 0.50 7.57 -51.92 -0.39 0.11 16 40 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 0.91 8.12 -51.93 -0.42 0.48 16 44 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.83 8.10 -51.93 -0.42 0.40 16 47 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.08 0.28 7.67 -51.92 -0.40 -0.12 16 LS Contribution 396.25 15.07 5.97 5.97 Total: -1.00 -37.14 396.25 -9.22 -46.36 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -7.82 Total: -3.79 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -2.70 Total: -1.77 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.54 Total: -54.43 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.55 Total: -9.00 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.14 -9.22 -46.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262902910.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.982 kcal (2) G-P(sol) polarization free energy of solvation -37.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds