Wall clock time and date at job start Tue Mar 31 2020 21:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41599 * 114.00236 * 2 1 4 4 C 1.34779 * 120.00397 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99823 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00286 * 179.97438 * 4 3 2 7 7 C 1.53116 * 109.52399 * 179.97438 * 6 4 3 8 8 C 1.53039 * 109.28072 * 177.56077 * 7 6 4 9 9 N 1.46846 * 109.52163 * 300.81719 * 8 7 6 10 10 C 1.38577 * 111.00206 * 185.83768 * 9 8 7 11 11 N 1.31213 * 126.47381 * 297.97799 * 10 9 8 12 12 N 1.28535 * 109.86052 * 179.69389 * 11 10 9 13 13 C 1.30288 * 110.05178 * 0.45423 * 12 11 10 14 14 C 1.50700 * 126.34940 * 179.82644 * 13 12 11 15 15 C 1.53001 * 109.46979 * 269.68659 * 14 13 12 16 16 C 1.50694 * 109.47394 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99869 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00429 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00250 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99680 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46961 * 89.99908 * 20 18 16 22 22 H 1.48501 * 109.47022 * 210.00056 * 20 18 16 23 23 H 1.48498 * 109.47127 * 330.00222 * 20 18 16 24 24 N 1.36456 * 126.47023 * 117.93754 * 10 9 8 25 25 C 1.46490 * 127.14118 * 0.02562 * 24 10 9 26 26 C 1.46855 * 111.19748 * 61.74401 * 9 8 7 27 27 C 1.53040 * 109.51900 * 298.25792 * 26 9 8 28 28 H 1.09006 * 109.46718 * 60.00746 * 1 2 3 29 29 H 1.08998 * 109.47033 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47276 * 300.00511 * 1 2 3 31 31 H 0.96997 * 120.00001 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.57838 * 59.84028 * 6 4 3 33 33 H 1.09002 * 109.50588 * 57.61896 * 7 6 4 34 34 H 1.09007 * 109.50259 * 297.49787 * 7 6 4 35 35 H 1.08996 * 109.46261 * 180.80417 * 8 7 6 36 36 H 1.08998 * 109.46283 * 60.83194 * 8 7 6 37 37 H 1.08997 * 109.47683 * 149.68343 * 14 13 12 38 38 H 1.09002 * 109.46992 * 29.68036 * 14 13 12 39 39 H 1.09008 * 109.46994 * 59.99823 * 15 14 13 40 40 H 1.09003 * 109.47220 * 300.00135 * 15 14 13 41 41 H 0.97003 * 120.00048 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.47746 * 265.45224 * 25 24 10 43 43 H 1.09005 * 109.46808 * 25.45010 * 25 24 10 44 44 H 1.09001 * 109.47189 * 145.45022 * 25 24 10 45 45 H 1.08998 * 109.46516 * 58.27075 * 26 9 8 46 46 H 1.09001 * 109.46089 * 178.24420 * 26 9 8 47 47 H 1.09006 * 109.50351 * 299.23370 * 27 26 9 48 48 H 1.09008 * 109.50091 * 179.12443 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 3.3454 1.4345 0.0005 5 8 4.0582 0.4533 0.0015 6 6 3.9583 2.8111 -0.0001 7 6 5.4848 2.6916 0.0014 8 6 6.1013 4.0909 -0.0607 9 7 5.6471 4.7736 -1.2789 10 6 6.2880 5.9926 -1.4334 11 7 6.2240 7.0166 -0.6156 12 7 6.9466 7.9800 -1.0648 13 6 7.5021 7.6341 -2.1914 14 6 8.4175 8.4843 -3.0341 15 6 7.5883 9.2799 -4.0442 16 6 8.5035 10.1306 -4.8865 17 1 9.5700 10.1066 -4.7179 18 6 7.9794 10.9405 -5.8716 19 7 8.7781 11.6833 -6.6063 20 14 6.1345 10.9837 -6.1617 21 1 5.5249 12.0404 -5.3149 22 1 5.8651 11.2786 -7.5920 23 1 5.5470 9.6663 -5.8087 24 7 7.1053 6.3543 -2.4645 25 6 7.4802 5.5404 -3.6233 26 6 4.1883 4.9422 -1.2806 27 6 3.5147 3.5682 -1.2549 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.4349 2.0783 -0.0004 32 1 3.6351 3.3552 0.8874 33 1 5.8054 2.1139 -0.8656 34 1 5.8098 2.1909 0.9135 35 1 7.1881 4.0087 -0.0743 36 1 5.7914 4.6634 0.8135 37 1 9.1211 7.8438 -3.5658 38 1 8.9668 9.1731 -2.3922 39 1 6.8846 9.9205 -3.5123 40 1 7.0389 8.5912 -4.6860 41 1 8.4093 12.2533 -7.2992 42 1 8.4276 5.0393 -3.4244 43 1 6.7070 4.7948 -3.8091 44 1 7.5849 6.1812 -4.4988 45 1 3.8873 5.5107 -0.4006 46 1 3.8857 5.4782 -2.1802 47 1 3.8043 3.0043 -2.1416 48 1 2.4320 3.6939 -1.2404 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262902910.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:18 Heat of formation + Delta-G solvation = 26.366764 kcal Electronic energy + Delta-G solvation = -29188.344087 eV Core-core repulsion = 25088.014974 eV Total energy + Delta-G solvation = -4100.329113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.02272 -41.23056 -39.52590 -38.13231 -36.39964 -35.74918 -34.94388 -33.74665 -33.06810 -31.92672 -30.36002 -28.51741 -27.66090 -27.25295 -26.18684 -24.27520 -23.43844 -22.88243 -21.80189 -21.56191 -20.61888 -19.22857 -19.04056 -18.38730 -18.10077 -17.43173 -17.27555 -16.66621 -16.35131 -15.95579 -15.86356 -15.65572 -15.42726 -15.10840 -15.04912 -14.77146 -14.59653 -14.53116 -14.31735 -14.14560 -13.67699 -13.45637 -13.31987 -13.01293 -12.98517 -12.80370 -12.63779 -12.29514 -12.21940 -12.19744 -12.10041 -11.86488 -11.78748 -11.66716 -11.51714 -11.42010 -11.05881 -10.95675 -10.77598 -9.99455 -9.97563 -9.89497 -8.29457 -6.33615 0.69162 0.91061 1.25787 1.34787 1.36776 1.46407 1.53176 1.73481 2.34434 2.63627 3.05843 3.28350 3.43871 3.57728 3.65607 3.78439 3.80993 3.98799 4.06799 4.11688 4.26869 4.29672 4.37250 4.37749 4.41772 4.43396 4.53485 4.54577 4.66304 4.68266 4.69723 4.71479 4.74180 4.80025 4.81678 4.94305 5.10239 5.12313 5.28060 5.29572 5.42376 5.50936 5.63915 5.69118 5.73708 6.20471 6.24884 6.27434 6.73668 7.23530 7.30910 7.67432 8.86432 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020168 B = 0.002164 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.987798 B =12936.792570 C =13667.341369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.186 6.186 3 N -0.588 5.588 4 C 0.532 3.468 5 O -0.571 6.571 6 C -0.088 4.088 7 C -0.086 4.086 8 C 0.073 3.927 9 N -0.458 5.458 10 C 0.339 3.661 11 N -0.340 5.340 12 N -0.329 5.329 13 C 0.199 3.801 14 C -0.011 4.011 15 C 0.005 3.995 16 C -0.527 4.527 17 H 0.046 0.954 18 C 0.012 3.988 19 N -0.944 5.944 20 Si 0.942 3.058 21 H -0.274 1.274 22 H -0.280 1.280 23 H -0.252 1.252 24 N -0.464 5.464 25 C 0.072 3.928 26 C 0.066 3.934 27 C -0.097 4.097 28 H 0.070 0.930 29 H 0.122 0.878 30 H 0.071 0.929 31 H 0.425 0.575 32 H 0.131 0.869 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.009 0.991 40 H 0.022 0.978 41 H 0.267 0.733 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.091 0.909 45 H 0.057 0.943 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.302 -24.097 12.480 32.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 O -0.190 6.190 3 N -0.292 5.292 4 C 0.320 3.680 5 O -0.449 6.449 6 C -0.109 4.109 7 C -0.125 4.125 8 C -0.054 4.054 9 N -0.185 5.185 10 C -0.018 4.018 11 N -0.184 5.184 12 N -0.169 5.169 13 C -0.070 4.070 14 C -0.051 4.051 15 C -0.033 4.033 16 C -0.565 4.565 17 H 0.065 0.935 18 C -0.185 4.185 19 N -0.584 5.584 20 Si 0.767 3.233 21 H -0.200 1.200 22 H -0.206 1.206 23 H -0.175 1.175 24 N -0.156 5.156 25 C -0.070 4.070 26 C -0.061 4.061 27 C -0.135 4.135 28 H 0.089 0.911 29 H 0.140 0.860 30 H 0.089 0.911 31 H 0.269 0.731 32 H 0.148 0.852 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.027 0.973 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.117 0.883 43 H 0.131 0.869 44 H 0.110 0.890 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.968 -24.376 13.114 33.000 hybrid contribution -0.770 0.534 -0.869 1.278 sum -18.738 -23.842 12.245 32.703 Atomic orbital electron populations 1.23555 0.78058 1.05917 1.02707 1.90576 1.22885 1.08058 1.97450 1.47671 1.05612 0.99035 1.76917 1.21179 0.79856 0.92059 0.74863 1.90726 1.61487 1.41913 1.50748 1.21394 0.96483 0.90349 1.02680 1.21360 0.92339 0.94600 1.04180 1.22142 1.00405 0.94157 0.88672 1.58794 1.07228 1.11969 1.40498 1.22484 0.97174 0.93917 0.88266 1.74415 1.19718 0.98629 1.25685 1.73964 1.11028 1.22167 1.09779 1.25267 1.01289 0.84478 0.95957 1.19965 0.94451 0.95765 0.94939 1.19376 0.95455 0.94852 0.93663 1.21309 0.94495 1.24122 1.16570 0.93524 1.25844 1.02597 0.94641 0.95444 1.70033 1.37257 1.28270 1.22842 0.85782 0.80461 0.79672 0.77434 1.19953 1.20596 1.17539 1.46422 1.35863 1.12797 1.20498 1.22353 1.03933 0.95709 0.84978 1.22212 0.82914 0.98243 1.02682 1.21647 1.01659 0.93423 0.96737 0.91099 0.85989 0.91084 0.73102 0.85170 0.90852 0.89599 0.90669 0.92703 0.88655 0.89420 0.97257 0.95966 0.92399 0.88342 0.86913 0.88988 0.92424 0.90449 0.90309 0.86951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.03 11.30 113.37 1.28 1.25 16 2 O -0.19 -2.92 11.47 -21.39 -0.25 -3.16 16 3 N -0.59 -6.79 6.30 -173.53 -1.09 -7.89 16 4 C 0.53 8.76 7.30 87.65 0.64 9.40 16 5 O -0.57 -15.49 16.38 14.36 0.24 -15.25 16 6 C -0.09 -0.93 2.59 -11.46 -0.03 -0.96 16 7 C -0.09 -1.26 4.68 30.65 0.14 -1.12 16 8 C 0.07 1.28 5.38 86.33 0.46 1.75 16 9 N -0.46 -9.22 4.65 -706.14 -3.28 -12.51 16 10 C 0.34 9.65 6.41 260.11 1.67 11.32 16 11 N -0.34 -12.00 12.19 -58.01 -0.71 -12.71 16 12 N -0.33 -13.13 12.18 -49.54 -0.60 -13.73 16 13 C 0.20 7.15 7.32 137.64 1.01 8.16 16 14 C -0.01 -0.43 5.45 29.85 0.16 -0.27 16 15 C 0.01 0.23 4.02 29.85 0.12 0.35 16 16 C -0.53 -28.95 9.66 25.60 0.25 -28.70 16 17 H 0.05 2.76 7.99 -2.91 -0.02 2.74 16 18 C 0.01 0.71 5.47 84.66 0.46 1.17 16 19 N -0.94 -57.43 13.96 21.45 0.30 -57.13 16 20 Si 0.94 43.59 27.47 68.60 1.88 45.47 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 24 N -0.46 -13.54 3.21 -538.20 -1.73 -15.27 16 25 C 0.07 1.47 10.88 127.77 1.39 2.86 16 26 C 0.07 1.02 5.38 86.33 0.46 1.48 16 27 C -0.10 -0.86 5.26 30.65 0.16 -0.70 16 28 H 0.07 0.15 8.14 -2.38 -0.02 0.13 16 29 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.43 1.25 8.03 -92.71 -0.74 0.51 16 32 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 1.28 8.04 -2.39 -0.02 1.26 16 34 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 3.19 7.97 -2.39 -0.02 3.17 16 38 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 39 H 0.01 0.43 7.57 -2.38 -0.02 0.42 16 40 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 41 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.11 1.87 8.12 -2.38 -0.02 1.85 16 44 H 0.09 1.99 8.05 -2.39 -0.02 1.97 16 45 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.08 1.32 8.10 -2.39 -0.02 1.30 16 47 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 48 H 0.11 0.27 7.67 -2.38 -0.02 0.25 16 Total: -1.00 -82.63 396.25 3.11 -79.52 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 0.16 Total: 6.64 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 8.18 Total: 6.02 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -7.12 Total: -119.23 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.01 Total: -18.42 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.47 kcal Total: -82.63 3.11 -79.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262902910.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.888 kcal (2) G-P(sol) polarization free energy of solvation -82.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds