Wall clock time and date at job start Tue Mar 31 2020 21:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00040 * 2 1 4 4 C 1.53004 * 109.46850 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46433 * 184.90700 * 4 3 2 6 6 C 1.36741 * 127.13331 * 264.81651 * 5 4 3 7 7 C 1.50696 * 126.35256 * 359.94848 * 6 5 4 8 8 C 1.53003 * 109.46978 * 89.99509 * 7 6 5 9 9 C 1.52997 * 109.46885 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46828 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00090 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99719 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99623 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00112 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.46944 * 90.00039 * 14 12 10 16 16 H 1.48500 * 109.47116 * 209.99786 * 14 12 10 17 17 H 1.48496 * 109.47245 * 330.00036 * 14 12 10 18 18 N 1.30295 * 107.30042 * 179.97438 * 6 5 4 19 19 N 1.28524 * 110.05852 * 359.72696 * 18 6 5 20 20 C 1.31220 * 109.85619 * 0.45309 * 19 18 6 21 21 N 1.38584 * 126.47332 * 179.82033 * 20 19 18 22 22 C 1.46907 * 110.99810 * 265.42767 * 21 20 19 23 23 C 1.52986 * 108.87806 * 54.31704 * 22 21 20 24 24 N 1.46008 * 109.94809 * 50.31607 * 23 22 21 25 25 C 1.33720 * 122.92811 * 341.87845 * 24 23 22 26 26 O 1.21278 * 118.62541 * 181.71074 * 25 24 23 27 27 C 1.46900 * 110.99816 * 28.27251 * 21 20 19 28 28 H 1.09003 * 109.47609 * 300.00352 * 1 2 3 29 29 H 1.09010 * 109.46925 * 59.99933 * 1 2 3 30 30 H 1.08996 * 109.47565 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46882 * 59.99807 * 3 2 1 32 32 H 1.08996 * 109.46641 * 299.99910 * 3 2 1 33 33 H 1.08998 * 109.46880 * 64.90969 * 4 3 2 34 34 H 1.08994 * 109.47250 * 304.90421 * 4 3 2 35 35 H 1.08991 * 109.47563 * 210.00211 * 7 6 5 36 36 H 1.09009 * 109.46896 * 330.00007 * 7 6 5 37 37 H 1.08991 * 109.47546 * 300.00712 * 8 7 6 38 38 H 1.09008 * 109.46463 * 60.00802 * 8 7 6 39 39 H 1.08997 * 109.47975 * 300.00381 * 9 8 7 40 40 H 1.09003 * 109.47305 * 60.01125 * 9 8 7 41 41 H 0.96999 * 120.00294 * 179.97438 * 13 12 10 42 42 H 1.08997 * 109.45512 * 294.53834 * 22 21 20 43 43 H 1.09003 * 109.58861 * 174.17980 * 22 21 20 44 44 H 1.09003 * 109.37791 * 290.19945 * 23 22 21 45 45 H 1.08998 * 109.37775 * 170.43150 * 23 22 21 46 46 H 0.97003 * 118.54143 * 161.89447 * 24 23 22 47 47 H 1.08998 * 109.38453 * 166.77515 * 27 21 20 48 48 H 1.09001 * 109.38763 * 47.08927 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1308 2.5180 0.1188 6 6 4.5640 3.3217 -0.8991 7 6 4.5205 3.0009 -2.3709 8 6 3.1937 3.4849 -2.9593 9 6 3.1498 3.1598 -4.4537 10 6 1.8432 3.6371 -5.0334 11 1 1.1170 4.1241 -4.3995 12 6 1.5749 3.4521 -6.3732 13 7 0.4345 3.8682 -6.8790 14 14 2.8308 2.6093 -7.4695 15 1 2.5820 1.1452 -7.4723 16 1 2.7112 3.1343 -8.8535 17 1 4.1973 2.8782 -6.9544 18 7 5.0220 4.4162 -0.3605 19 7 4.9032 4.3615 0.9180 20 6 4.3675 3.2157 1.2673 21 7 4.0892 2.7959 2.5584 22 6 5.1902 1.9864 3.0976 23 6 6.4921 2.7813 2.9809 24 7 6.3110 4.1186 3.5382 25 6 5.1074 4.6665 3.7365 26 8 5.0482 5.7957 4.1751 27 6 3.8253 3.9416 3.4391 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8636 0.7213 -0.9298 34 1 3.8509 0.5699 0.8436 35 1 5.3463 3.5013 -2.8764 36 1 4.6084 1.9234 -2.5106 37 1 2.3679 2.9845 -2.4538 38 1 3.1059 4.5625 -2.8196 39 1 3.9756 3.6606 -4.9590 40 1 3.2378 2.0824 -4.5939 41 1 0.2459 3.7385 -7.8216 42 1 5.2742 1.0616 2.5269 43 1 4.9953 1.7558 4.1449 44 1 6.7737 2.8621 1.9310 45 1 7.2811 2.2653 3.5281 46 1 7.0988 4.6327 3.7750 47 1 3.3852 3.5876 4.3712 48 1 3.1300 4.6227 2.9483 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263256652.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:08 Heat of formation + Delta-G solvation = 11.126514 kcal Electronic energy + Delta-G solvation = -30411.969793 eV Core-core repulsion = 26310.979814 eV Total energy + Delta-G solvation = -4100.989980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.25674 -40.71488 -38.21818 -37.72615 -35.60689 -35.02955 -34.44227 -32.46274 -30.46668 -30.21885 -30.05679 -27.75616 -26.60912 -26.35389 -24.31388 -23.64937 -23.56056 -21.74365 -20.83062 -20.15833 -19.73332 -17.95766 -17.50276 -17.10674 -16.74808 -16.39499 -16.36224 -16.21641 -15.80829 -15.54107 -15.21144 -14.87075 -14.51268 -14.33125 -14.12633 -13.93532 -13.58444 -13.50086 -12.95956 -12.78254 -12.61154 -12.49162 -12.23806 -12.01956 -11.97341 -11.72977 -11.65292 -11.47432 -11.21356 -11.14796 -10.86976 -10.40551 -10.31145 -10.04365 -10.01515 -9.86162 -9.75970 -9.43836 -9.37335 -9.25497 -8.62117 -8.58183 -6.08223 -4.07023 1.52766 1.88209 2.41968 2.73365 2.87105 3.21333 3.26935 3.35487 3.37910 3.68364 4.00568 4.21440 4.28267 4.36217 4.41089 4.45264 4.62202 4.67714 4.80669 4.89910 4.93580 5.01217 5.05955 5.12747 5.16958 5.24888 5.25734 5.28563 5.34011 5.42769 5.54634 5.59215 5.66818 5.84516 5.86199 5.96933 6.32596 6.39230 6.46655 6.49617 6.74674 6.80867 6.93072 6.99426 7.19610 7.32443 7.73318 7.94661 8.48641 8.68236 8.96181 9.53539 11.05230 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013503 B = 0.003066 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.168530 B = 9129.603868 C =10215.989324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.047 3.953 4 C 0.117 3.883 5 N -0.464 5.464 6 C 0.211 3.789 7 C -0.041 4.041 8 C -0.095 4.095 9 C -0.012 4.012 10 C -0.522 4.522 11 H 0.071 0.929 12 C 0.067 3.933 13 N -0.903 5.903 14 Si 0.880 3.120 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.264 1.264 18 N -0.284 5.284 19 N -0.300 5.300 20 C 0.321 3.679 21 N -0.446 5.446 22 C 0.039 3.961 23 C 0.080 3.920 24 N -0.713 5.713 25 C 0.510 3.490 26 O -0.547 6.547 27 C 0.056 3.944 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.020 0.980 40 H 0.012 0.988 41 H 0.263 0.737 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.402 0.598 47 H 0.125 0.875 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.019 -11.596 22.237 26.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C -0.030 4.030 4 C -0.007 4.007 5 N -0.159 5.159 6 C -0.056 4.056 7 C -0.080 4.080 8 C -0.134 4.134 9 C -0.049 4.049 10 C -0.560 4.560 11 H 0.089 0.911 12 C -0.135 4.135 13 N -0.541 5.541 14 Si 0.707 3.293 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.189 1.189 18 N -0.123 5.123 19 N -0.144 5.144 20 C -0.035 4.035 21 N -0.171 5.171 22 C -0.088 4.088 23 C -0.046 4.046 24 N -0.366 5.366 25 C 0.296 3.704 26 O -0.423 6.423 27 C -0.074 4.074 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.038 0.962 40 H 0.031 0.969 41 H 0.073 0.927 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.238 0.762 47 H 0.143 0.857 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.951 -10.227 22.361 26.167 hybrid contribution 0.627 -0.981 -0.753 1.386 sum 9.578 -11.208 21.608 26.158 Atomic orbital electron populations 1.22793 0.79821 1.03019 1.00681 1.87743 1.20679 1.26572 1.95637 1.22757 0.92168 0.85834 1.02287 1.21553 0.93125 0.80286 1.05710 1.46097 1.47287 1.16651 1.05837 1.25349 0.98669 0.88005 0.93583 1.20441 1.02636 1.02156 0.82809 1.21509 0.92406 1.01278 0.98207 1.19571 0.98169 0.96209 0.90970 1.21088 1.01327 1.38873 0.94667 0.91130 1.25034 0.95192 0.95190 0.98048 1.69911 1.23315 1.47222 1.13700 0.86779 0.82669 0.79887 0.79967 1.20318 1.21370 1.18871 1.74123 1.19840 1.18266 1.00062 1.74688 1.17086 1.15917 1.06689 1.22283 1.03122 0.91246 0.86889 1.59140 1.39814 1.21153 0.96968 1.22702 0.87106 0.96439 1.02588 1.21991 0.99107 0.83570 0.99940 1.45314 1.08540 1.17630 1.65148 1.20582 0.86159 0.86851 0.76856 1.90769 1.87199 1.18369 1.45946 1.22389 0.95765 0.90852 0.98358 0.93953 0.93167 0.89278 0.92187 0.91519 0.87454 0.88006 0.88207 0.90172 0.93005 0.91731 0.96161 0.96938 0.92692 0.88117 0.87680 0.91551 0.89491 0.76214 0.85730 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -4.32 10.70 -35.23 -0.38 -4.70 16 3 C 0.05 0.52 6.26 37.16 0.23 0.75 16 4 C 0.12 1.11 6.44 -4.04 -0.03 1.09 16 5 N -0.46 -5.59 2.81 -114.08 -0.32 -5.91 16 6 C 0.21 3.11 7.32 -154.01 -1.13 1.98 16 7 C -0.04 -0.59 5.58 -27.88 -0.16 -0.75 16 8 C -0.10 -1.76 5.13 -26.73 -0.14 -1.90 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 10 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 11 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 12 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 13 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 14 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 18 N -0.28 -4.89 12.18 32.99 0.40 -4.49 16 19 N -0.30 -4.74 9.93 30.31 0.30 -4.44 16 20 C 0.32 3.96 5.40 -318.87 -1.72 2.24 16 21 N -0.45 -4.01 5.06 -176.14 -0.89 -4.90 16 22 C 0.04 0.23 6.00 -3.83 -0.02 0.20 16 23 C 0.08 0.54 6.52 -4.31 -0.03 0.51 16 24 N -0.71 -6.69 5.32 -61.06 -0.32 -7.02 16 25 C 0.51 6.12 6.48 -11.67 -0.08 6.04 16 26 O -0.55 -8.88 17.82 5.56 0.10 -8.78 16 27 C 0.06 0.54 5.66 -5.19 -0.03 0.51 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.86 6.82 -51.93 -0.35 0.51 16 33 H 0.11 0.96 7.11 -51.93 -0.37 0.60 16 34 H 0.10 0.76 7.61 -51.93 -0.40 0.36 16 35 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.08 0.98 7.19 -51.92 -0.37 0.61 16 37 H 0.05 0.94 6.82 -51.93 -0.35 0.59 16 38 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 40 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.10 0.45 7.61 -51.93 -0.40 0.05 16 43 H 0.10 0.38 8.07 -51.93 -0.42 -0.04 16 44 H 0.07 0.61 7.24 -51.93 -0.38 0.23 16 45 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.40 3.54 8.84 -40.82 -0.36 3.18 16 47 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.12 1.36 8.01 -51.93 -0.42 0.94 16 LS Contribution 388.51 15.07 5.85 5.85 Total: -1.00 -36.45 388.51 -9.22 -45.68 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.55 Total: 0.25 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.52 Total: -1.26 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.06 Total: -53.47 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.28 Total: -13.48 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.45 -9.22 -45.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263256652.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.805 kcal (2) G-P(sol) polarization free energy of solvation -36.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds