Wall clock time and date at job start Tue Mar 31 2020 21:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00040 * 2 1 4 4 C 1.53004 * 109.46850 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46433 * 184.90700 * 4 3 2 6 6 C 1.36741 * 127.13331 * 264.81651 * 5 4 3 7 7 C 1.50696 * 126.35256 * 359.94848 * 6 5 4 8 8 C 1.53003 * 109.46978 * 89.99509 * 7 6 5 9 9 C 1.52997 * 109.46885 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46828 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00090 * 0.02562 * 10 9 8 12 12 C 1.37883 * 119.99719 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99623 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00112 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.46944 * 90.00039 * 14 12 10 16 16 H 1.48500 * 109.47116 * 209.99786 * 14 12 10 17 17 H 1.48496 * 109.47245 * 330.00036 * 14 12 10 18 18 N 1.30295 * 107.30042 * 179.97438 * 6 5 4 19 19 N 1.28524 * 110.05852 * 359.72696 * 18 6 5 20 20 C 1.31220 * 109.85619 * 0.45309 * 19 18 6 21 21 N 1.38584 * 126.47332 * 179.82033 * 20 19 18 22 22 C 1.46907 * 110.99810 * 265.42767 * 21 20 19 23 23 C 1.52986 * 108.87806 * 54.31704 * 22 21 20 24 24 N 1.46008 * 109.94809 * 50.31607 * 23 22 21 25 25 C 1.33720 * 122.92811 * 341.87845 * 24 23 22 26 26 O 1.21278 * 118.62541 * 181.71074 * 25 24 23 27 27 C 1.46900 * 110.99816 * 28.27251 * 21 20 19 28 28 H 1.09003 * 109.47609 * 300.00352 * 1 2 3 29 29 H 1.09010 * 109.46925 * 59.99933 * 1 2 3 30 30 H 1.08996 * 109.47565 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46882 * 59.99807 * 3 2 1 32 32 H 1.08996 * 109.46641 * 299.99910 * 3 2 1 33 33 H 1.08998 * 109.46880 * 64.90969 * 4 3 2 34 34 H 1.08994 * 109.47250 * 304.90421 * 4 3 2 35 35 H 1.08991 * 109.47563 * 210.00211 * 7 6 5 36 36 H 1.09009 * 109.46896 * 330.00007 * 7 6 5 37 37 H 1.08991 * 109.47546 * 300.00712 * 8 7 6 38 38 H 1.09008 * 109.46463 * 60.00802 * 8 7 6 39 39 H 1.08997 * 109.47975 * 300.00381 * 9 8 7 40 40 H 1.09003 * 109.47305 * 60.01125 * 9 8 7 41 41 H 0.96999 * 120.00294 * 179.97438 * 13 12 10 42 42 H 1.08997 * 109.45512 * 294.53834 * 22 21 20 43 43 H 1.09003 * 109.58861 * 174.17980 * 22 21 20 44 44 H 1.09003 * 109.37791 * 290.19945 * 23 22 21 45 45 H 1.08998 * 109.37775 * 170.43150 * 23 22 21 46 46 H 0.97003 * 118.54143 * 161.89447 * 24 23 22 47 47 H 1.08998 * 109.38453 * 166.77515 * 27 21 20 48 48 H 1.09001 * 109.38763 * 47.08927 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1308 2.5180 0.1188 6 6 4.5640 3.3217 -0.8991 7 6 4.5205 3.0009 -2.3709 8 6 3.1937 3.4849 -2.9593 9 6 3.1498 3.1598 -4.4537 10 6 1.8432 3.6371 -5.0334 11 1 1.1170 4.1241 -4.3995 12 6 1.5749 3.4521 -6.3732 13 7 0.4345 3.8682 -6.8790 14 14 2.8308 2.6093 -7.4695 15 1 2.5820 1.1452 -7.4723 16 1 2.7112 3.1343 -8.8535 17 1 4.1973 2.8782 -6.9544 18 7 5.0220 4.4162 -0.3605 19 7 4.9032 4.3615 0.9180 20 6 4.3675 3.2157 1.2673 21 7 4.0892 2.7959 2.5584 22 6 5.1902 1.9864 3.0976 23 6 6.4921 2.7813 2.9809 24 7 6.3110 4.1186 3.5382 25 6 5.1074 4.6665 3.7365 26 8 5.0482 5.7957 4.1751 27 6 3.8253 3.9416 3.4391 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8636 0.7213 -0.9298 34 1 3.8509 0.5699 0.8436 35 1 5.3463 3.5013 -2.8764 36 1 4.6084 1.9234 -2.5106 37 1 2.3679 2.9845 -2.4538 38 1 3.1059 4.5625 -2.8196 39 1 3.9756 3.6606 -4.9590 40 1 3.2378 2.0824 -4.5939 41 1 0.2459 3.7385 -7.8216 42 1 5.2742 1.0616 2.5269 43 1 4.9953 1.7558 4.1449 44 1 6.7737 2.8621 1.9310 45 1 7.2811 2.2653 3.5281 46 1 7.0988 4.6327 3.7750 47 1 3.3852 3.5876 4.3712 48 1 3.1300 4.6227 2.9483 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263256652.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:06 Heat of formation + Delta-G solvation = -16.435441 kcal Electronic energy + Delta-G solvation = -30413.164969 eV Core-core repulsion = 26310.979814 eV Total energy + Delta-G solvation = -4102.185156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.27869 -41.54231 -39.05642 -38.62418 -36.86447 -36.15659 -35.41517 -34.36294 -31.76887 -31.06066 -30.91841 -29.18048 -27.46820 -27.14514 -25.55113 -24.84255 -24.34764 -22.68656 -22.31255 -21.48902 -20.52469 -18.93709 -18.70745 -18.36523 -17.88922 -17.30194 -17.20247 -17.09079 -16.66677 -16.43349 -16.38604 -15.97551 -15.71970 -15.67030 -15.26309 -14.86958 -14.73303 -14.40124 -14.20379 -13.93573 -13.66253 -13.46981 -13.42644 -13.16039 -12.87784 -12.77852 -12.67683 -12.51680 -12.45175 -12.31191 -12.12827 -11.79249 -11.72656 -11.54643 -11.38615 -11.34188 -11.25536 -10.75683 -10.72090 -10.46096 -10.16761 -9.60296 -8.27303 -6.32304 0.53446 0.98362 1.39231 1.42779 1.52581 1.54258 1.66410 2.07881 2.39250 2.45891 2.85882 3.08750 3.29993 3.37330 3.52213 3.63159 3.74332 3.85141 3.90172 4.03741 4.13998 4.18720 4.24059 4.29387 4.35356 4.35883 4.47927 4.48308 4.51850 4.57135 4.63139 4.71101 4.78880 4.85469 4.88851 4.94515 5.02427 5.05800 5.25989 5.33785 5.49092 5.57987 5.67891 5.74217 5.95469 6.05230 6.20703 6.29215 6.75983 7.09483 7.32341 7.60566 8.89908 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013503 B = 0.003066 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.168530 B = 9129.603868 C =10215.989324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.393 6.393 3 C 0.052 3.948 4 C 0.116 3.884 5 N -0.457 5.457 6 C 0.205 3.795 7 C -0.028 4.028 8 C -0.084 4.084 9 C -0.008 4.008 10 C -0.534 4.534 11 H 0.023 0.977 12 C 0.000 4.000 13 N -0.956 5.956 14 Si 0.954 3.046 15 H -0.261 1.261 16 H -0.290 1.290 17 H -0.239 1.239 18 N -0.324 5.324 19 N -0.340 5.340 20 C 0.341 3.659 21 N -0.437 5.437 22 C 0.036 3.964 23 C 0.079 3.921 24 N -0.708 5.708 25 C 0.505 3.495 26 O -0.602 6.602 27 C 0.060 3.940 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.119 0.881 34 H 0.134 0.866 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.048 0.952 38 H 0.035 0.965 39 H 0.026 0.974 40 H 0.034 0.966 41 H 0.265 0.735 42 H 0.125 0.875 43 H 0.139 0.861 44 H 0.043 0.957 45 H 0.126 0.874 46 H 0.402 0.598 47 H 0.164 0.836 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.167 -15.426 23.454 30.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.312 6.312 3 C -0.026 4.026 4 C -0.006 4.006 5 N -0.152 5.152 6 C -0.064 4.064 7 C -0.068 4.068 8 C -0.123 4.123 9 C -0.046 4.046 10 C -0.572 4.572 11 H 0.041 0.959 12 C -0.196 4.196 13 N -0.597 5.597 14 Si 0.777 3.223 15 H -0.186 1.186 16 H -0.216 1.216 17 H -0.162 1.162 18 N -0.163 5.163 19 N -0.184 5.184 20 C -0.016 4.016 21 N -0.162 5.162 22 C -0.090 4.090 23 C -0.047 4.047 24 N -0.358 5.358 25 C 0.291 3.709 26 O -0.482 6.482 27 C -0.071 4.071 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.137 0.863 34 H 0.152 0.848 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.143 0.857 43 H 0.156 0.844 44 H 0.061 0.939 45 H 0.143 0.857 46 H 0.238 0.762 47 H 0.181 0.819 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.129 -14.107 23.592 29.656 hybrid contribution -0.152 0.217 -1.025 1.059 sum 10.977 -13.890 22.567 28.683 Atomic orbital electron populations 1.22943 0.79086 1.04315 1.00492 1.87725 1.21520 1.26331 1.95590 1.22653 0.93299 0.85718 1.00918 1.21800 0.91832 0.79160 1.07839 1.46134 1.46807 1.17235 1.04993 1.25201 0.99144 0.88077 0.93963 1.20263 0.99882 1.04032 0.82614 1.21258 0.95075 0.99613 0.96329 1.19511 0.95023 0.97109 0.92909 1.21484 1.02820 1.38267 0.94615 0.95874 1.26102 0.97524 0.96070 0.99899 1.70089 1.25987 1.49301 1.14276 0.85602 0.80541 0.79100 0.77092 1.18596 1.21620 1.16182 1.74021 1.21421 1.19801 1.01090 1.74612 1.19418 1.18051 1.06290 1.22629 1.00605 0.90143 0.88234 1.59398 1.41048 1.20463 0.95296 1.23035 0.85037 0.96133 1.04811 1.22202 1.01068 0.82419 0.98965 1.45399 1.07879 1.18727 1.63831 1.21029 0.87485 0.86307 0.76076 1.90739 1.88048 1.20718 1.48730 1.22420 0.94202 0.90723 0.99714 0.92779 0.94780 0.87280 0.92220 0.94342 0.86257 0.84823 0.87791 0.86890 0.93325 0.94564 0.95612 0.94784 0.92580 0.85724 0.84351 0.93907 0.85652 0.76196 0.81901 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.72 16 2 O -0.39 -7.90 10.70 -148.98 -1.59 -9.49 16 3 C 0.05 1.05 6.26 71.98 0.45 1.51 16 4 C 0.12 1.85 6.44 86.38 0.56 2.40 16 5 N -0.46 -10.17 2.81 -514.85 -1.45 -11.61 16 6 C 0.20 5.86 7.32 137.64 1.01 6.87 16 7 C -0.03 -0.78 5.58 29.85 0.17 -0.61 16 8 C -0.08 -3.11 5.13 30.59 0.16 -2.96 16 9 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 10 C -0.53 -30.44 9.66 25.60 0.25 -30.19 16 11 H 0.02 1.48 7.99 -2.91 -0.02 1.45 16 12 C 0.00 0.02 5.47 84.66 0.46 0.48 16 13 N -0.96 -60.10 13.96 21.45 0.30 -59.80 16 14 Si 0.95 42.79 27.47 68.60 1.88 44.67 16 15 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 16 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 17 H -0.24 -9.67 6.54 99.48 0.65 -9.02 16 18 N -0.32 -11.31 12.18 -49.54 -0.60 -11.92 16 19 N -0.34 -10.82 9.93 -58.00 -0.58 -11.39 16 20 C 0.34 7.93 5.40 260.11 1.41 9.34 16 21 N -0.44 -6.66 5.06 -711.18 -3.60 -10.26 16 22 C 0.04 0.25 6.00 86.30 0.52 0.77 16 23 C 0.08 0.82 6.52 86.47 0.56 1.38 16 24 N -0.71 -12.35 5.32 -466.08 -2.48 -14.83 16 25 C 0.50 11.87 6.48 87.68 0.57 12.44 16 26 O -0.60 -20.17 17.82 -3.02 -0.05 -20.23 16 27 C 0.06 1.06 5.66 85.42 0.48 1.54 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.04 1.00 6.82 -2.39 -0.02 0.98 16 33 H 0.12 1.68 7.11 -2.39 -0.02 1.66 16 34 H 0.13 1.32 7.61 -2.39 -0.02 1.31 16 35 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.11 2.35 7.19 -2.38 -0.02 2.33 16 37 H 0.05 1.81 6.82 -2.39 -0.02 1.79 16 38 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.03 1.10 7.20 -2.39 -0.02 1.09 16 40 H 0.03 1.36 7.57 -2.39 -0.02 1.34 16 41 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 42 H 0.12 0.38 7.61 -2.39 -0.02 0.36 16 43 H 0.14 0.19 8.07 -2.39 -0.02 0.17 16 44 H 0.04 0.69 7.24 -2.39 -0.02 0.68 16 45 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.40 6.84 8.84 -92.71 -0.82 6.02 16 47 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.10 2.21 8.01 -2.39 -0.02 2.19 16 Total: -1.00 -85.56 388.51 -0.11 -85.67 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.10 Total: 14.73 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 7.96 Total: 4.45 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -8.41 Total: -119.81 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -1.65 Total: -29.72 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.67 kcal Total: -85.56 -0.11 -85.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263256652.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.236 kcal (2) G-P(sol) polarization free energy of solvation -85.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds