Wall clock time and date at job start Tue Mar 31 2020 20:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.46951 * 2 1 4 4 C 1.42897 * 114.00028 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.91880 * 26.09716 * 4 3 2 6 6 C 1.55126 * 111.16466 * 262.16927 * 4 3 2 7 7 N 1.47423 * 104.94356 * 205.13352 * 6 4 3 8 8 C 1.34782 * 125.64787 * 203.97185 * 7 6 4 9 9 O 1.21279 * 119.99783 * 180.02562 * 8 7 6 10 10 C 1.50704 * 119.99884 * 0.03519 * 8 7 6 11 11 C 1.52994 * 109.47141 * 180.02562 * 10 8 7 12 12 N 1.46498 * 109.47403 * 180.02562 * 11 10 8 13 13 C 1.34428 * 126.82707 * 124.99862 * 12 11 10 14 14 N 1.30828 * 108.07803 * 179.97438 * 13 12 11 15 15 C 1.33244 * 109.83170 * 0.02562 * 14 13 12 16 16 N 1.30717 * 108.94370 * 359.75022 * 15 14 13 17 17 C 1.47023 * 108.70322 * 23.99936 * 7 6 4 18 18 C 1.54323 * 107.27299 * 358.94355 * 17 7 6 19 19 H 1.09003 * 110.71871 * 96.34470 * 18 17 7 20 20 C 1.52993 * 110.71889 * 219.44028 * 18 17 7 21 21 N 1.46496 * 109.47551 * 291.15578 * 20 18 17 22 22 C 1.36934 * 120.00548 * 179.97438 * 21 20 18 23 23 H 1.08004 * 119.99288 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00389 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00257 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 H 1.09004 * 109.46952 * 60.00601 * 1 2 3 31 31 H 1.09007 * 109.46970 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47424 * 300.00091 * 1 2 3 33 33 H 1.09000 * 109.47424 * 239.99908 * 2 1 3 34 34 H 1.09004 * 109.46952 * 119.99399 * 2 1 3 35 35 H 1.09003 * 110.41874 * 86.20262 * 6 4 3 36 36 H 1.08995 * 110.30078 * 324.00090 * 6 4 3 37 37 H 1.08999 * 109.47270 * 300.00415 * 10 8 7 38 38 H 1.09003 * 109.47028 * 60.00416 * 10 8 7 39 39 H 1.08999 * 109.47055 * 300.00152 * 11 10 8 40 40 H 1.09003 * 109.47142 * 60.00091 * 11 10 8 41 41 H 1.08001 * 125.95721 * 359.97438 * 13 12 11 42 42 H 1.07999 * 125.52779 * 180.02562 * 15 14 13 43 43 H 1.09004 * 109.88118 * 239.52095 * 17 7 6 44 44 H 1.09003 * 110.00730 * 118.43465 * 17 7 6 45 45 H 1.09004 * 109.46862 * 171.15777 * 20 18 17 46 46 H 1.09004 * 109.46998 * 51.16254 * 20 18 17 47 47 H 0.96999 * 119.99694 * 0.02562 * 21 20 18 48 48 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8912 0.5793 -0.4470 6 6 3.9730 1.7011 1.4339 7 7 5.2625 2.3893 1.2419 8 6 6.2859 2.3990 2.1189 9 8 7.3048 3.0017 1.8551 10 6 6.1643 1.6607 3.4270 11 6 7.4548 1.8313 4.2309 12 7 7.3368 1.1132 5.5023 13 6 8.1729 0.1741 5.9779 14 7 7.7214 -0.2202 7.1407 15 6 6.6037 0.4409 7.4394 16 7 6.3303 1.2726 6.4687 17 6 5.2470 3.0639 -0.0644 18 6 3.8864 2.7545 -0.7237 19 1 3.1791 3.5648 -0.5469 20 6 4.0562 2.5044 -2.2235 21 7 4.4266 3.7561 -2.8885 22 6 4.6338 3.7772 -4.2419 23 1 4.5237 2.8710 -4.8191 24 6 4.9854 4.9630 -4.8719 25 7 5.1840 4.9834 -6.1729 26 14 5.1752 6.5304 -3.8734 27 1 3.8717 7.2391 -3.8120 28 1 5.6190 6.1903 -2.4977 29 1 6.1858 7.4078 -4.5169 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 4.1224 0.7519 1.9485 36 1 3.2860 2.3329 1.9968 37 1 5.3265 2.0644 3.9955 38 1 5.9945 0.6018 3.2322 39 1 8.2928 1.4279 3.6625 40 1 7.6242 2.8903 4.4257 41 1 9.0623 -0.1910 5.4859 42 1 6.0208 0.3136 8.3397 43 1 6.0562 2.6833 -0.6877 44 1 5.3576 4.1399 0.0702 45 1 3.1181 2.1362 -2.6389 46 1 4.8394 1.7631 -2.3819 47 1 4.5259 4.5698 -2.3699 48 1 5.4293 5.8122 -6.6131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264524148.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:56 Heat of formation + Delta-G solvation = 31.215120 kcal Electronic energy + Delta-G solvation = -29012.231486 eV Core-core repulsion = 24912.112613 eV Total energy + Delta-G solvation = -4100.118872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.42491 -40.49814 -38.82566 -36.86840 -35.22042 -34.96250 -32.49120 -31.59413 -31.48776 -31.10060 -29.94458 -28.57193 -26.43409 -24.76438 -23.52544 -22.88661 -22.37061 -21.84851 -21.74101 -20.39510 -19.48541 -18.18062 -17.66479 -17.36601 -16.74352 -16.52880 -16.00022 -15.82783 -15.41955 -15.12879 -14.93307 -14.65113 -14.43566 -14.27235 -14.01147 -13.76299 -13.49044 -13.13281 -13.08350 -12.88390 -12.71214 -12.57652 -12.47186 -12.32418 -11.92348 -11.74742 -11.72757 -11.45889 -11.24409 -10.83447 -10.79652 -10.67210 -10.45810 -10.28683 -10.17325 -10.15778 -10.00858 -9.71688 -9.59815 -8.94018 -8.85265 -7.28100 -5.79230 -3.15765 1.23481 1.83073 2.32171 2.58798 2.64916 3.37289 3.39904 3.44283 3.45488 3.94655 3.98461 4.10456 4.23181 4.30032 4.48465 4.57552 4.60401 4.68353 4.79973 4.83072 4.86039 4.97807 5.04372 5.11192 5.16535 5.19121 5.27251 5.31185 5.48060 5.52314 5.56623 5.66938 5.69102 5.72367 5.83032 5.92549 5.94742 6.03686 6.05024 6.06508 6.37077 6.53977 6.56861 7.04194 7.22505 7.68872 7.83970 7.94850 8.39077 9.17162 9.89564 10.08265 11.38914 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.002660 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.418662 B =10524.105179 C =12641.859898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.086 3.914 5 H 0.084 0.916 6 C 0.080 3.920 7 N -0.612 5.612 8 C 0.533 3.467 9 O -0.537 6.537 10 C -0.147 4.147 11 C 0.145 3.855 12 N -0.379 5.379 13 C 0.257 3.743 14 N -0.549 5.549 15 C 0.197 3.803 16 N -0.320 5.320 17 C 0.114 3.886 18 C -0.106 4.106 19 H 0.097 0.903 20 C 0.170 3.830 21 N -0.755 5.755 22 C -0.246 4.246 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.933 5.933 26 Si 0.883 3.117 27 H -0.284 1.284 28 H -0.276 1.276 29 H -0.290 1.290 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.220 0.780 42 H 0.217 0.783 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.037 0.963 46 H 0.028 0.972 47 H 0.361 0.639 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 -13.326 24.579 28.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.284 6.284 4 C 0.026 3.974 5 H 0.102 0.898 6 C -0.044 4.044 7 N -0.347 5.347 8 C 0.321 3.679 9 O -0.414 6.414 10 C -0.188 4.188 11 C 0.023 3.977 12 N -0.170 5.170 13 C -0.040 4.040 14 N -0.277 5.277 15 C -0.106 4.106 16 N -0.147 5.147 17 C -0.007 4.007 18 C -0.126 4.126 19 H 0.115 0.885 20 C 0.043 3.957 21 N -0.401 5.401 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.580 5.580 26 Si 0.714 3.286 27 H -0.210 1.210 28 H -0.202 1.202 29 H -0.217 1.217 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.131 0.869 40 H 0.119 0.881 41 H 0.236 0.764 42 H 0.233 0.767 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.055 0.945 46 H 0.046 0.954 47 H 0.194 0.806 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.933 -12.636 24.362 27.512 hybrid contribution 0.367 0.938 0.402 1.084 sum -1.566 -11.698 24.764 27.433 Atomic orbital electron populations 1.21744 0.93606 1.02205 1.03353 1.22573 0.95795 0.83703 1.00133 1.87975 1.19353 1.26472 1.94579 1.23189 0.81793 0.99018 0.93363 0.89805 1.22816 0.85272 0.97487 0.98833 1.48340 1.15010 1.52030 1.19293 1.19889 0.82265 0.81253 0.84533 1.90768 1.28678 1.44514 1.77439 1.21839 1.00124 1.02616 0.94223 1.21575 0.98609 0.98658 0.78885 1.50629 1.19140 1.30606 1.16621 1.26144 0.97035 0.89070 0.91743 1.70565 1.13099 1.29539 1.14465 1.26039 0.93848 0.91773 0.98919 1.78050 1.11478 1.24678 1.00536 1.22124 0.98187 0.98132 0.82298 1.22635 0.95578 0.97371 0.96971 0.88477 1.20598 0.98201 0.89922 0.87008 1.42680 1.85344 1.05897 1.06136 1.19014 1.39763 0.96839 0.81934 0.89189 1.24669 1.01462 0.97423 0.95443 1.69701 1.53881 1.26781 1.07683 0.86563 0.77745 0.84612 0.79716 1.21019 1.20248 1.21664 0.91484 0.91165 0.91938 0.92871 0.93562 0.90560 0.90024 0.87359 0.88318 0.86891 0.88117 0.76387 0.76694 0.89862 0.90768 0.94529 0.95370 0.80597 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.05 0.48 6.49 37.16 0.24 0.72 16 3 O -0.37 -4.25 10.16 -35.23 -0.36 -4.60 16 4 C 0.09 0.96 3.00 -24.46 -0.07 0.88 16 5 H 0.08 0.87 7.74 -51.93 -0.40 0.47 16 6 C 0.08 0.75 6.44 -2.41 -0.02 0.73 16 7 N -0.61 -7.23 3.33 -170.38 -0.57 -7.79 16 8 C 0.53 6.22 7.85 -10.98 -0.09 6.13 16 9 O -0.54 -8.20 16.31 5.56 0.09 -8.11 16 10 C -0.15 -1.16 4.92 -27.88 -0.14 -1.29 16 11 C 0.14 1.07 5.84 -4.05 -0.02 1.04 16 12 N -0.38 -3.11 3.69 -62.63 -0.23 -3.34 16 13 C 0.26 1.85 12.63 -90.66 -1.14 0.70 16 14 N -0.55 -5.11 11.19 -15.83 -0.18 -5.29 16 15 C 0.20 1.70 13.03 -91.81 -1.20 0.50 16 16 N -0.32 -3.14 12.57 29.29 0.37 -2.77 16 17 C 0.11 1.66 6.27 -3.06 -0.02 1.64 16 18 C -0.11 -1.52 2.71 -88.79 -0.24 -1.76 16 19 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 20 C 0.17 3.10 5.59 -4.05 -0.02 3.08 16 21 N -0.75 -17.49 5.28 -59.91 -0.32 -17.80 16 22 C -0.25 -6.88 10.47 -15.06 -0.16 -7.04 16 23 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 24 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 25 N -0.93 -29.24 13.97 55.49 0.78 -28.47 16 26 Si 0.88 22.16 27.74 -169.99 -4.71 17.45 16 27 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.52 6.52 56.52 0.37 -6.16 16 29 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.54 7.48 -51.93 -0.39 0.15 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.64 7.85 -51.93 -0.41 0.23 16 39 H 0.11 0.65 8.04 -51.93 -0.42 0.23 16 40 H 0.10 0.83 8.10 -51.93 -0.42 0.41 16 41 H 0.22 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.22 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.08 1.35 7.73 -51.93 -0.40 0.95 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 47 H 0.36 8.22 5.46 -40.82 -0.22 8.00 16 48 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 400.27 15.07 6.03 6.03 Total: -1.00 -36.36 400.27 -9.43 -45.79 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.74 Total: 4.30 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -2.59 Total: 4.61 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -0.15 Total: -65.46 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.27 Total: -12.71 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.36 -9.43 -45.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264524148.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.001 kcal (2) G-P(sol) polarization free energy of solvation -36.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds