Wall clock time and date at job start Tue Mar 31 2020 20:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.46951 * 2 1 4 4 C 1.42897 * 114.00028 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.91880 * 26.09716 * 4 3 2 6 6 C 1.55126 * 111.16466 * 262.16927 * 4 3 2 7 7 N 1.47423 * 104.94356 * 205.13352 * 6 4 3 8 8 C 1.34782 * 125.64787 * 203.97185 * 7 6 4 9 9 O 1.21279 * 119.99783 * 180.02562 * 8 7 6 10 10 C 1.50704 * 119.99884 * 0.03519 * 8 7 6 11 11 C 1.52994 * 109.47141 * 180.02562 * 10 8 7 12 12 N 1.46498 * 109.47403 * 180.02562 * 11 10 8 13 13 C 1.34428 * 126.82707 * 124.99862 * 12 11 10 14 14 N 1.30828 * 108.07803 * 179.97438 * 13 12 11 15 15 C 1.33244 * 109.83170 * 0.02562 * 14 13 12 16 16 N 1.30717 * 108.94370 * 359.75022 * 15 14 13 17 17 C 1.47023 * 108.70322 * 23.99936 * 7 6 4 18 18 C 1.54323 * 107.27299 * 358.94355 * 17 7 6 19 19 H 1.09003 * 110.71871 * 96.34470 * 18 17 7 20 20 C 1.52993 * 110.71889 * 219.44028 * 18 17 7 21 21 N 1.46496 * 109.47551 * 291.15578 * 20 18 17 22 22 C 1.36934 * 120.00548 * 179.97438 * 21 20 18 23 23 H 1.08004 * 119.99288 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00389 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00257 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 H 1.09004 * 109.46952 * 60.00601 * 1 2 3 31 31 H 1.09007 * 109.46970 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47424 * 300.00091 * 1 2 3 33 33 H 1.09000 * 109.47424 * 239.99908 * 2 1 3 34 34 H 1.09004 * 109.46952 * 119.99399 * 2 1 3 35 35 H 1.09003 * 110.41874 * 86.20262 * 6 4 3 36 36 H 1.08995 * 110.30078 * 324.00090 * 6 4 3 37 37 H 1.08999 * 109.47270 * 300.00415 * 10 8 7 38 38 H 1.09003 * 109.47028 * 60.00416 * 10 8 7 39 39 H 1.08999 * 109.47055 * 300.00152 * 11 10 8 40 40 H 1.09003 * 109.47142 * 60.00091 * 11 10 8 41 41 H 1.08001 * 125.95721 * 359.97438 * 13 12 11 42 42 H 1.07999 * 125.52779 * 180.02562 * 15 14 13 43 43 H 1.09004 * 109.88118 * 239.52095 * 17 7 6 44 44 H 1.09003 * 110.00730 * 118.43465 * 17 7 6 45 45 H 1.09004 * 109.46862 * 171.15777 * 20 18 17 46 46 H 1.09004 * 109.46998 * 51.16254 * 20 18 17 47 47 H 0.96999 * 119.99694 * 0.02562 * 21 20 18 48 48 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8912 0.5793 -0.4470 6 6 3.9730 1.7011 1.4339 7 7 5.2625 2.3893 1.2419 8 6 6.2859 2.3990 2.1189 9 8 7.3048 3.0017 1.8551 10 6 6.1643 1.6607 3.4270 11 6 7.4548 1.8313 4.2309 12 7 7.3368 1.1132 5.5023 13 6 8.1729 0.1741 5.9779 14 7 7.7214 -0.2202 7.1407 15 6 6.6037 0.4409 7.4394 16 7 6.3303 1.2726 6.4687 17 6 5.2470 3.0639 -0.0644 18 6 3.8864 2.7545 -0.7237 19 1 3.1791 3.5648 -0.5469 20 6 4.0562 2.5044 -2.2235 21 7 4.4266 3.7561 -2.8885 22 6 4.6338 3.7772 -4.2419 23 1 4.5237 2.8710 -4.8191 24 6 4.9854 4.9630 -4.8719 25 7 5.1840 4.9834 -6.1729 26 14 5.1752 6.5304 -3.8734 27 1 3.8717 7.2391 -3.8120 28 1 5.6190 6.1903 -2.4977 29 1 6.1858 7.4078 -4.5169 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 4.1224 0.7519 1.9485 36 1 3.2860 2.3329 1.9968 37 1 5.3265 2.0644 3.9955 38 1 5.9945 0.6018 3.2322 39 1 8.2928 1.4279 3.6625 40 1 7.6242 2.8903 4.4257 41 1 9.0623 -0.1910 5.4859 42 1 6.0208 0.3136 8.3397 43 1 6.0562 2.6833 -0.6877 44 1 5.3576 4.1399 0.0702 45 1 3.1181 2.1362 -2.6389 46 1 4.8394 1.7631 -2.3819 47 1 4.5259 4.5698 -2.3699 48 1 5.4293 5.8122 -6.6131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264524148.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:54 Heat of formation + Delta-G solvation = 7.144756 kcal Electronic energy + Delta-G solvation = -29013.275255 eV Core-core repulsion = 24912.112613 eV Total energy + Delta-G solvation = -4101.162642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.99364 -41.45448 -39.76114 -37.85083 -36.62157 -35.86195 -34.08855 -32.71065 -32.18661 -31.94141 -31.09768 -29.51031 -27.67808 -25.85112 -24.64485 -23.80539 -23.10202 -22.90890 -22.48022 -21.62562 -20.38789 -19.70489 -18.81314 -18.23105 -17.60036 -17.28722 -16.81259 -16.67166 -16.52632 -16.14532 -15.92081 -15.75837 -15.58494 -15.24213 -15.03129 -14.78930 -14.71259 -14.32067 -14.09920 -13.99169 -13.73961 -13.49982 -13.44436 -13.24604 -13.07296 -12.91680 -12.77057 -12.45886 -12.32522 -12.23599 -12.14721 -11.96784 -11.81051 -11.66882 -11.25813 -11.02668 -10.97990 -10.79598 -10.66869 -10.52216 -9.84075 -9.34085 -8.05323 -5.39146 0.68153 1.24717 1.35908 1.38361 1.42869 1.45285 1.78998 2.02733 2.45466 2.61965 3.15897 3.26912 3.35434 3.42473 3.52291 3.55398 3.74912 3.78676 3.86722 4.07143 4.11776 4.14608 4.18859 4.24455 4.28151 4.35551 4.40654 4.53848 4.57418 4.61409 4.70467 4.71270 4.74301 4.78614 4.91921 5.00120 5.03606 5.09764 5.18613 5.27521 5.33863 5.48212 5.72488 5.86971 6.18097 6.25086 6.32848 6.93024 7.04411 7.12572 7.79599 7.97888 9.15963 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.002660 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.418662 B =10524.105179 C =12641.859898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.385 6.385 4 C 0.093 3.907 5 H 0.094 0.906 6 C 0.086 3.914 7 N -0.612 5.612 8 C 0.532 3.468 9 O -0.578 6.578 10 C -0.131 4.131 11 C 0.147 3.853 12 N -0.383 5.383 13 C 0.263 3.737 14 N -0.578 5.578 15 C 0.194 3.806 16 N -0.350 5.350 17 C 0.119 3.881 18 C -0.099 4.099 19 H 0.092 0.908 20 C 0.170 3.830 21 N -0.758 5.758 22 C -0.233 4.233 23 H 0.060 0.940 24 C -0.062 4.062 25 N -0.982 5.982 26 Si 0.951 3.049 27 H -0.277 1.277 28 H -0.255 1.255 29 H -0.296 1.296 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.131 0.869 40 H 0.087 0.913 41 H 0.257 0.743 42 H 0.240 0.760 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.032 0.968 46 H 0.030 0.970 47 H 0.365 0.635 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 -14.612 27.579 31.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.303 6.303 4 C 0.034 3.966 5 H 0.112 0.888 6 C -0.036 4.036 7 N -0.346 5.346 8 C 0.322 3.678 9 O -0.458 6.458 10 C -0.171 4.171 11 C 0.025 3.975 12 N -0.174 5.174 13 C -0.033 4.033 14 N -0.306 5.306 15 C -0.109 4.109 16 N -0.178 5.178 17 C -0.004 4.004 18 C -0.118 4.118 19 H 0.111 0.889 20 C 0.044 3.956 21 N -0.404 5.404 22 C -0.364 4.364 23 H 0.078 0.922 24 C -0.253 4.253 25 N -0.632 5.632 26 Si 0.778 3.222 27 H -0.203 1.203 28 H -0.179 1.179 29 H -0.222 1.222 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.130 0.870 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.140 0.860 39 H 0.149 0.851 40 H 0.106 0.894 41 H 0.272 0.728 42 H 0.256 0.744 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.050 0.950 46 H 0.048 0.952 47 H 0.198 0.802 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.316 -13.965 27.419 30.857 hybrid contribution 0.444 1.208 -0.558 1.403 sum -1.872 -12.756 26.861 29.795 Atomic orbital electron populations 1.21770 0.93158 1.03338 1.02576 1.22798 0.96217 0.82535 1.01330 1.87954 1.19231 1.28402 1.94731 1.23097 0.82113 0.97368 0.94035 0.88794 1.22920 0.83876 0.99039 0.97782 1.48391 1.16111 1.51852 1.18225 1.20548 0.81334 0.80624 0.85297 1.90752 1.30314 1.46297 1.78409 1.21744 1.00507 1.03160 0.91719 1.21571 0.99026 0.98135 0.78764 1.50632 1.19204 1.30966 1.16574 1.26906 0.97357 0.87919 0.91137 1.70597 1.13787 1.30587 1.15661 1.26580 0.93820 0.91068 0.99407 1.78000 1.12758 1.25691 1.01374 1.21830 0.97423 0.97395 0.83726 1.22430 0.95649 0.99446 0.94285 0.88940 1.20709 0.97565 0.87859 0.89484 1.42707 1.85213 1.07893 1.04546 1.19013 1.37902 0.95600 0.83898 0.92248 1.25472 1.02238 1.01105 0.96523 1.69874 1.56017 1.27610 1.09705 0.85472 0.77702 0.79992 0.79027 1.20261 1.17932 1.22229 0.93162 0.89111 0.91798 0.92942 0.91035 0.87001 0.89329 0.86982 0.86046 0.85149 0.89445 0.72774 0.74435 0.91944 0.92351 0.94994 0.95236 0.80181 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16 2 C 0.05 0.70 6.49 71.98 0.47 1.17 16 3 O -0.38 -8.05 10.16 -148.98 -1.51 -9.56 16 4 C 0.09 1.86 3.00 32.06 0.10 1.95 16 5 H 0.09 1.69 7.74 -2.39 -0.02 1.67 16 6 C 0.09 1.33 6.44 86.93 0.56 1.89 16 7 N -0.61 -13.19 3.33 -811.35 -2.70 -15.89 16 8 C 0.53 11.39 7.85 87.66 0.69 12.08 16 9 O -0.58 -17.17 16.31 -3.03 -0.05 -17.22 16 10 C -0.13 -1.67 4.92 29.85 0.15 -1.52 16 11 C 0.15 1.83 5.84 86.38 0.50 2.34 16 12 N -0.38 -5.38 3.69 -352.08 -1.30 -6.68 16 13 C 0.26 3.09 12.63 180.36 2.28 5.37 16 14 N -0.58 -9.58 11.19 -204.00 -2.28 -11.86 16 15 C 0.19 2.98 13.03 180.76 2.36 5.34 16 16 N -0.35 -6.21 12.57 -61.24 -0.77 -6.98 16 17 C 0.12 3.38 6.27 86.73 0.54 3.92 16 18 C -0.10 -2.72 2.71 -9.61 -0.03 -2.75 16 19 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 20 C 0.17 6.18 5.59 86.38 0.48 6.66 16 21 N -0.76 -35.19 5.28 -343.47 -1.81 -37.00 16 22 C -0.23 -13.34 10.47 84.03 0.88 -12.46 16 23 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 24 C -0.06 -3.67 5.50 84.86 0.47 -3.21 16 25 N -0.98 -63.31 13.97 21.65 0.30 -63.01 16 26 Si 0.95 46.20 27.74 68.60 1.90 48.10 16 27 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 28 H -0.25 -11.30 6.52 99.48 0.65 -10.65 16 29 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 0.78 8.12 -2.39 -0.02 0.76 16 34 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.11 1.00 7.48 -2.39 -0.02 0.99 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.12 1.05 7.85 -2.39 -0.02 1.03 16 39 H 0.13 1.16 8.04 -2.39 -0.02 1.14 16 40 H 0.09 1.34 8.10 -2.39 -0.02 1.32 16 41 H 0.26 0.60 8.06 -2.91 -0.02 0.58 16 42 H 0.24 2.00 8.06 -2.91 -0.02 1.98 16 43 H 0.06 2.02 7.73 -2.39 -0.02 2.00 16 44 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.03 1.08 8.00 -2.39 -0.02 1.06 16 47 H 0.37 16.35 5.46 -92.71 -0.51 15.85 16 48 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -81.16 400.27 2.35 -78.81 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.39 Total: 21.82 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 10.18 Total: 19.46 kcal Atomic # 7 Polarization: -132.85 SS G_CDS: -8.56 Total: -141.41 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -1.56 Total: -26.78 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.90 Total: 48.10 kcal Total: -81.16 2.35 -78.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264524148.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.955 kcal (2) G-P(sol) polarization free energy of solvation -81.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds