Wall clock time and date at job start Tue Mar 31 2020 20:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47377 * 2 1 4 4 C 1.46900 * 110.99699 * 75.79337 * 3 2 1 5 5 C 1.52994 * 109.47388 * 200.14447 * 4 3 2 6 6 C 1.53003 * 109.47299 * 181.75737 * 5 4 3 7 7 N 1.46506 * 109.46776 * 179.97438 * 6 5 4 8 8 C 1.34778 * 119.99366 * 179.97438 * 7 6 5 9 9 O 1.21677 * 120.00306 * 355.18744 * 8 7 6 10 10 C 1.46768 * 119.99525 * 174.90287 * 8 7 6 11 11 C 1.36668 * 126.84434 * 5.20297 * 10 8 7 12 12 N 1.33322 * 107.78441 * 179.97438 * 11 10 8 13 13 C 1.30855 * 109.68591 * 359.97438 * 12 11 10 14 14 N 1.34504 * 109.16308 * 359.73241 * 13 12 11 15 15 C 1.46498 * 126.47267 * 180.27418 * 14 13 12 16 16 C 1.46902 * 111.00384 * 199.74320 * 3 2 1 17 17 C 1.50705 * 109.46700 * 66.04984 * 16 3 2 18 18 O 1.21290 * 120.00012 * 0.02562 * 17 16 3 19 19 N 1.34770 * 119.99576 * 180.02562 * 17 16 3 20 20 C 1.37104 * 120.00163 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99252 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00252 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00130 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99876 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47076 * 89.99683 * 24 22 20 26 26 H 1.48498 * 109.47006 * 209.99921 * 24 22 20 27 27 H 1.48503 * 109.46721 * 329.99730 * 24 22 20 28 28 H 1.08997 * 109.46838 * 304.20660 * 1 2 3 29 29 H 1.09000 * 109.47132 * 64.20390 * 1 2 3 30 30 H 1.08993 * 109.47181 * 184.20120 * 1 2 3 31 31 H 1.09008 * 109.46940 * 240.00662 * 2 1 3 32 32 H 1.08997 * 109.47610 * 120.00311 * 2 1 3 33 33 H 1.09001 * 109.47506 * 80.14194 * 4 3 2 34 34 H 1.08998 * 109.47087 * 320.14539 * 4 3 2 35 35 H 1.09003 * 109.47176 * 61.75509 * 5 4 3 36 36 H 1.08995 * 109.47158 * 301.75794 * 5 4 3 37 37 H 1.08999 * 109.47261 * 60.00306 * 6 5 4 38 38 H 1.09001 * 109.46864 * 299.99759 * 6 5 4 39 39 H 0.96993 * 120.00184 * 0.02562 * 7 6 5 40 40 H 1.08000 * 126.10506 * 0.03153 * 11 10 8 41 41 H 1.08001 * 125.42153 * 180.02562 * 13 12 11 42 42 H 1.08995 * 109.47093 * 272.23108 * 15 14 13 43 43 H 1.09009 * 109.47539 * 32.23323 * 15 14 13 44 44 H 1.09002 * 109.47427 * 152.23029 * 15 14 13 45 45 H 1.09000 * 109.47232 * 186.04833 * 16 3 2 46 46 H 1.09001 * 109.46917 * 306.05011 * 16 3 2 47 47 H 0.97005 * 120.00458 * 0.02562 * 19 17 16 48 48 H 0.97001 * 119.99966 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8779 1.9935 1.3295 5 6 1.9084 3.5175 1.1988 6 6 1.8047 4.1507 2.5878 7 7 1.8345 5.6101 2.4626 8 6 1.7553 6.3826 3.5642 9 8 1.5713 5.8722 4.6533 10 6 1.8975 7.8390 3.4508 11 6 2.0136 8.5638 2.2979 12 7 2.1204 9.8494 2.6343 13 6 2.0769 9.9695 3.9366 14 7 1.9331 8.7510 4.4877 15 6 1.8367 8.4480 5.9178 16 6 3.4122 1.4511 -0.4633 17 6 3.4787 1.0474 -1.9137 18 8 2.4657 0.7358 -2.5035 19 7 4.6637 1.0326 -2.5554 20 6 4.7244 0.6649 -3.8748 21 1 3.8224 0.3874 -4.3999 22 6 5.9462 0.6491 -4.5362 23 7 7.0437 0.9872 -3.8972 24 14 6.0287 0.1487 -6.3341 25 1 5.8619 1.3504 -7.1905 26 1 7.3451 -0.4793 -6.6132 27 1 4.9445 -0.8227 -6.6276 28 1 -0.3633 0.5777 0.8499 29 1 -0.3633 0.4472 -0.9253 30 1 -0.3633 -1.0248 0.0753 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.6988 1.6671 1.9680 34 1 0.9300 1.6855 1.7707 35 1 1.0691 3.8465 0.5859 36 1 2.8431 3.8232 0.7290 37 1 2.6439 3.8218 3.2007 38 1 0.8698 3.8450 3.0576 39 1 1.9104 6.0203 1.5870 40 1 2.0172 8.1661 1.2938 41 1 2.1411 10.8995 4.4819 42 1 2.8371 8.3129 6.3288 43 1 1.3411 9.2719 6.4313 44 1 1.2601 7.5335 6.0574 45 1 3.7841 2.4696 -0.3522 46 1 4.0254 0.7735 0.1310 47 1 5.4740 1.2815 -2.0836 48 1 7.8966 0.9766 -4.3591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265122085.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:56 Heat of formation + Delta-G solvation = -6.428105 kcal Electronic energy + Delta-G solvation = -28287.464192 eV Core-core repulsion = 24185.712987 eV Total energy + Delta-G solvation = -4101.751205 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.57045 -39.62939 -38.79045 -37.00394 -35.55636 -34.35115 -33.85199 -32.31371 -31.30300 -30.58798 -29.87123 -27.49972 -27.11354 -25.25768 -24.07445 -23.12185 -21.99629 -21.55228 -20.88700 -20.21453 -19.13368 -18.28162 -17.85691 -16.55248 -16.52297 -16.39141 -16.04648 -15.68896 -15.11423 -14.92303 -14.64231 -14.48898 -14.36498 -14.17565 -13.98399 -13.81634 -13.67486 -13.41110 -13.31723 -13.15015 -12.72579 -12.19477 -12.11167 -11.91990 -11.72772 -11.49778 -11.32143 -11.22460 -11.10414 -10.77922 -10.60864 -10.42267 -10.38948 -10.21262 -10.19373 -10.11831 -9.46386 -9.45771 -8.97474 -8.40421 -7.97018 -7.87885 -6.41248 -3.81972 0.93456 2.07888 2.47508 2.95146 3.01993 3.18099 3.26771 3.32317 3.90475 3.97333 4.14076 4.22889 4.29906 4.39363 4.68222 4.75539 4.81241 4.90023 4.97504 5.01549 5.13037 5.16930 5.25035 5.32137 5.45784 5.49968 5.56934 5.66043 5.70597 5.82656 5.89939 5.91008 5.96000 6.04684 6.05926 6.11809 6.21565 6.29827 6.49422 6.58542 6.61194 7.11094 7.31993 7.42217 7.49668 7.55657 7.82118 8.07113 8.62447 9.18846 9.55354 10.07144 10.76514 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012314 B = 0.002023 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.274388 B =13835.652034 C =15514.639013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.051 3.949 3 N -0.515 5.515 4 C 0.058 3.942 5 C -0.129 4.129 6 C 0.124 3.876 7 N -0.714 5.714 8 C 0.595 3.405 9 O -0.549 6.549 10 C -0.089 4.089 11 C 0.041 3.959 12 N -0.496 5.496 13 C 0.205 3.795 14 N -0.428 5.428 15 C 0.064 3.936 16 C 0.044 3.956 17 C 0.443 3.557 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.021 0.979 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.406 0.594 40 H 0.180 0.820 41 H 0.213 0.787 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.046 0.954 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.680 12.883 19.742 25.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 N -0.239 5.239 4 C -0.071 4.071 5 C -0.167 4.167 6 C 0.000 4.000 7 N -0.365 5.365 8 C 0.382 3.618 9 O -0.428 6.428 10 C -0.206 4.206 11 C -0.114 4.114 12 N -0.214 5.214 13 C -0.077 4.077 14 N -0.108 5.108 15 C -0.078 4.078 16 C -0.088 4.088 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.241 0.759 40 H 0.197 0.803 41 H 0.229 0.771 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.125 0.875 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.503 13.141 19.373 25.265 hybrid contribution 1.243 -0.831 0.177 1.506 sum -8.259 12.311 19.550 24.535 Atomic orbital electron populations 1.21686 0.95335 1.00484 1.02091 1.22154 0.95971 0.88245 1.01221 1.61534 1.19512 1.19286 1.23611 1.21996 1.01268 0.93494 0.90350 1.21795 1.04040 0.95709 0.95192 1.21395 1.02582 0.77765 0.98226 1.45644 1.74472 1.07343 1.09008 1.16744 0.76547 0.84028 0.84487 1.90779 1.50187 1.75006 1.26809 1.20775 1.19054 0.91740 0.89030 1.22719 1.01907 0.89128 0.97666 1.70178 1.20184 1.19669 1.11368 1.25193 1.02990 0.89289 0.90218 1.45277 1.50919 1.06789 1.07848 1.22332 1.04438 1.04746 0.76256 1.21907 0.89226 1.01746 0.95898 1.19751 0.84505 0.84879 0.88003 1.90507 1.34333 1.53144 1.67992 1.41884 1.07420 1.59495 1.11438 1.19686 0.95050 1.41846 0.86145 0.87934 1.25255 0.94825 0.97549 1.00367 1.69611 0.98723 1.48529 1.37511 0.85869 0.77553 0.78831 0.82103 1.20395 1.20983 1.19452 0.93601 0.91619 0.93067 0.88652 0.96058 0.94639 0.90486 0.90051 0.90816 0.91273 0.91063 0.75906 0.80272 0.77058 0.90116 0.89348 0.87486 0.89415 0.93575 0.77545 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 10.07 37.16 0.37 -1.52 16 2 C 0.05 0.81 5.18 -3.82 -0.02 0.79 16 3 N -0.52 -8.05 4.10 -236.07 -0.97 -9.02 16 4 C 0.06 0.67 4.81 -3.83 -0.02 0.65 16 5 C -0.13 -1.28 5.47 -26.73 -0.15 -1.42 16 6 C 0.12 1.14 5.68 -4.04 -0.02 1.11 16 7 N -0.71 -6.35 5.54 -61.59 -0.34 -6.69 16 8 C 0.60 6.44 7.78 -12.81 -0.10 6.34 16 9 O -0.55 -7.30 14.82 5.21 0.08 -7.22 16 10 C -0.09 -0.89 6.91 -82.14 -0.57 -1.45 16 11 C 0.04 0.39 11.37 -17.47 -0.20 0.19 16 12 N -0.50 -5.16 11.20 -14.42 -0.16 -5.32 16 13 C 0.21 1.58 12.52 -90.57 -1.13 0.44 16 14 N -0.43 -3.56 3.17 -121.97 -0.39 -3.95 16 15 C 0.06 0.36 10.79 59.85 0.65 1.01 16 16 C 0.04 0.75 5.27 -4.97 -0.03 0.72 16 17 C 0.44 10.17 7.30 -10.99 -0.08 10.09 16 18 O -0.58 -15.08 14.12 5.55 0.08 -15.00 16 19 N -0.57 -14.08 5.29 -10.96 -0.06 -14.14 16 20 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 24 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H 0.04 0.54 6.68 -51.93 -0.35 0.20 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 1.85 5.85 -51.92 -0.30 1.54 16 32 H 0.02 0.30 8.00 -51.93 -0.42 -0.12 16 33 H 0.04 0.39 7.99 -51.93 -0.42 -0.03 16 34 H 0.08 0.82 6.45 -51.93 -0.33 0.48 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.76 6.76 -51.93 -0.35 0.41 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.41 2.81 7.42 -40.82 -0.30 2.51 16 40 H 0.18 1.24 7.47 -52.49 -0.39 0.85 16 41 H 0.21 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.23 8.14 -51.92 -0.42 -0.20 16 44 H 0.11 0.81 6.30 -51.93 -0.33 0.48 16 45 H 0.09 1.35 6.63 -51.93 -0.34 1.00 16 46 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 47 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 396.59 15.07 5.98 5.98 Total: -1.00 -34.93 396.59 -8.79 -43.72 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -7.17 Total: 10.30 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -1.53 Total: 9.09 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: -1.19 Total: -62.78 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: 0.16 Total: -22.22 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.93 -8.79 -43.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265122085.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.293 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds