Wall clock time and date at job start Tue Mar 31 2020 20:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47377 * 2 1 4 4 C 1.46900 * 110.99699 * 75.79337 * 3 2 1 5 5 C 1.52994 * 109.47388 * 200.14447 * 4 3 2 6 6 C 1.53003 * 109.47299 * 181.75737 * 5 4 3 7 7 N 1.46506 * 109.46776 * 179.97438 * 6 5 4 8 8 C 1.34778 * 119.99366 * 179.97438 * 7 6 5 9 9 O 1.21677 * 120.00306 * 355.18744 * 8 7 6 10 10 C 1.46768 * 119.99525 * 174.90287 * 8 7 6 11 11 C 1.36668 * 126.84434 * 5.20297 * 10 8 7 12 12 N 1.33322 * 107.78441 * 179.97438 * 11 10 8 13 13 C 1.30855 * 109.68591 * 359.97438 * 12 11 10 14 14 N 1.34504 * 109.16308 * 359.73241 * 13 12 11 15 15 C 1.46498 * 126.47267 * 180.27418 * 14 13 12 16 16 C 1.46902 * 111.00384 * 199.74320 * 3 2 1 17 17 C 1.50705 * 109.46700 * 66.04984 * 16 3 2 18 18 O 1.21290 * 120.00012 * 0.02562 * 17 16 3 19 19 N 1.34770 * 119.99576 * 180.02562 * 17 16 3 20 20 C 1.37104 * 120.00163 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99252 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00252 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00130 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99876 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47076 * 89.99683 * 24 22 20 26 26 H 1.48498 * 109.47006 * 209.99921 * 24 22 20 27 27 H 1.48503 * 109.46721 * 329.99730 * 24 22 20 28 28 H 1.08997 * 109.46838 * 304.20660 * 1 2 3 29 29 H 1.09000 * 109.47132 * 64.20390 * 1 2 3 30 30 H 1.08993 * 109.47181 * 184.20120 * 1 2 3 31 31 H 1.09008 * 109.46940 * 240.00662 * 2 1 3 32 32 H 1.08997 * 109.47610 * 120.00311 * 2 1 3 33 33 H 1.09001 * 109.47506 * 80.14194 * 4 3 2 34 34 H 1.08998 * 109.47087 * 320.14539 * 4 3 2 35 35 H 1.09003 * 109.47176 * 61.75509 * 5 4 3 36 36 H 1.08995 * 109.47158 * 301.75794 * 5 4 3 37 37 H 1.08999 * 109.47261 * 60.00306 * 6 5 4 38 38 H 1.09001 * 109.46864 * 299.99759 * 6 5 4 39 39 H 0.96993 * 120.00184 * 0.02562 * 7 6 5 40 40 H 1.08000 * 126.10506 * 0.03153 * 11 10 8 41 41 H 1.08001 * 125.42153 * 180.02562 * 13 12 11 42 42 H 1.08995 * 109.47093 * 272.23108 * 15 14 13 43 43 H 1.09009 * 109.47539 * 32.23323 * 15 14 13 44 44 H 1.09002 * 109.47427 * 152.23029 * 15 14 13 45 45 H 1.09000 * 109.47232 * 186.04833 * 16 3 2 46 46 H 1.09001 * 109.46917 * 306.05011 * 16 3 2 47 47 H 0.97005 * 120.00458 * 0.02562 * 19 17 16 48 48 H 0.97001 * 119.99966 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8779 1.9935 1.3295 5 6 1.9084 3.5175 1.1988 6 6 1.8047 4.1507 2.5878 7 7 1.8345 5.6101 2.4626 8 6 1.7553 6.3826 3.5642 9 8 1.5713 5.8722 4.6533 10 6 1.8975 7.8390 3.4508 11 6 2.0136 8.5638 2.2979 12 7 2.1204 9.8494 2.6343 13 6 2.0769 9.9695 3.9366 14 7 1.9331 8.7510 4.4877 15 6 1.8367 8.4480 5.9178 16 6 3.4122 1.4511 -0.4633 17 6 3.4787 1.0474 -1.9137 18 8 2.4657 0.7358 -2.5035 19 7 4.6637 1.0326 -2.5554 20 6 4.7244 0.6649 -3.8748 21 1 3.8224 0.3874 -4.3999 22 6 5.9462 0.6491 -4.5362 23 7 7.0437 0.9872 -3.8972 24 14 6.0287 0.1487 -6.3341 25 1 5.8619 1.3504 -7.1905 26 1 7.3451 -0.4793 -6.6132 27 1 4.9445 -0.8227 -6.6276 28 1 -0.3633 0.5777 0.8499 29 1 -0.3633 0.4472 -0.9253 30 1 -0.3633 -1.0248 0.0753 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.6988 1.6671 1.9680 34 1 0.9300 1.6855 1.7707 35 1 1.0691 3.8465 0.5859 36 1 2.8431 3.8232 0.7290 37 1 2.6439 3.8218 3.2007 38 1 0.8698 3.8450 3.0576 39 1 1.9104 6.0203 1.5870 40 1 2.0172 8.1661 1.2938 41 1 2.1411 10.8995 4.4819 42 1 2.8371 8.3129 6.3288 43 1 1.3411 9.2719 6.4313 44 1 1.2601 7.5335 6.0574 45 1 3.7841 2.4696 -0.3522 46 1 4.0254 0.7735 0.1310 47 1 5.4740 1.2815 -2.0836 48 1 7.8966 0.9766 -4.3591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265122085.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:54 Heat of formation + Delta-G solvation = -31.910778 kcal Electronic energy + Delta-G solvation = -28288.569203 eV Core-core repulsion = 24185.712987 eV Total energy + Delta-G solvation = -4102.856217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.20009 -40.54390 -40.29816 -38.38892 -36.46787 -35.81582 -34.95020 -33.31039 -33.17260 -31.71207 -30.77697 -28.43339 -27.99730 -26.63957 -25.51724 -23.94659 -22.82135 -22.22545 -22.07904 -21.08476 -20.76319 -19.82796 -18.93282 -17.93716 -17.26269 -17.12090 -16.95691 -16.84181 -16.39488 -16.22998 -16.10324 -15.59412 -15.45387 -15.28927 -15.08804 -14.94638 -14.78497 -14.35548 -14.08214 -13.83927 -13.67493 -13.59661 -13.39984 -13.28948 -12.96226 -12.84731 -12.76642 -12.39967 -12.37031 -12.27145 -12.11542 -11.85962 -11.52519 -11.46991 -11.37268 -10.95800 -10.74812 -10.24337 -10.20355 -9.96405 -9.63543 -9.15691 -8.44195 -5.92242 0.25463 1.38929 1.42417 1.48686 1.54790 1.81740 2.09853 2.25753 2.28159 2.31671 2.82257 3.23092 3.41437 3.54296 3.80407 3.93910 3.96083 4.04993 4.07347 4.19377 4.27957 4.32201 4.36694 4.43311 4.46411 4.54727 4.57836 4.62034 4.68901 4.70136 4.76430 4.80526 4.96425 5.11707 5.16991 5.21732 5.28318 5.38913 5.43213 5.43506 5.45601 5.94612 6.08231 6.14680 6.29979 6.39603 6.64061 6.86228 7.07165 7.16358 7.60695 8.16740 8.73250 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012314 B = 0.002023 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.274388 B =13835.652034 C =15514.639013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.051 3.949 3 N -0.531 5.531 4 C 0.058 3.942 5 C -0.118 4.118 6 C 0.132 3.868 7 N -0.706 5.706 8 C 0.594 3.406 9 O -0.579 6.579 10 C -0.113 4.113 11 C 0.038 3.962 12 N -0.534 5.534 13 C 0.217 3.783 14 N -0.433 5.433 15 C 0.063 3.937 16 C 0.056 3.944 17 C 0.442 3.558 18 O -0.612 6.612 19 N -0.577 5.577 20 C -0.329 4.329 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.273 1.273 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.415 0.585 40 H 0.195 0.805 41 H 0.253 0.747 42 H 0.087 0.913 43 H 0.123 0.877 44 H 0.085 0.915 45 H 0.110 0.890 46 H 0.063 0.937 47 H 0.395 0.605 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.634 14.023 21.092 26.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.077 4.077 3 N -0.256 5.256 4 C -0.070 4.070 5 C -0.156 4.156 6 C 0.009 3.991 7 N -0.357 5.357 8 C 0.381 3.619 9 O -0.461 6.461 10 C -0.230 4.230 11 C -0.117 4.117 12 N -0.252 5.252 13 C -0.065 4.065 14 N -0.113 5.113 15 C -0.078 4.078 16 C -0.075 4.075 17 C 0.229 3.771 18 O -0.497 6.497 19 N -0.215 5.215 20 C -0.458 4.458 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.197 1.197 27 H -0.198 1.198 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.252 0.748 40 H 0.212 0.788 41 H 0.269 0.731 42 H 0.106 0.894 43 H 0.141 0.859 44 H 0.103 0.897 45 H 0.128 0.872 46 H 0.081 0.919 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.451 14.285 20.736 26.895 hybrid contribution 1.176 -1.147 -0.178 1.652 sum -8.274 13.139 20.558 25.763 Atomic orbital electron populations 1.21621 0.93838 1.01642 1.01726 1.22085 0.97235 0.88335 0.99998 1.61518 1.18326 1.19436 1.26324 1.22089 1.02536 0.94024 0.88304 1.21658 1.03783 0.94712 0.95457 1.21271 1.02511 0.77800 0.97564 1.45587 1.73686 1.07241 1.09186 1.16914 0.76082 0.84553 0.84305 1.90760 1.51853 1.75601 1.27885 1.20772 1.20752 0.91545 0.89922 1.23051 1.01124 0.89087 0.98401 1.70193 1.21934 1.20073 1.13022 1.25999 1.00497 0.90236 0.89794 1.45518 1.50519 1.06715 1.08541 1.22468 1.04930 1.05192 0.75206 1.21775 0.90931 1.03139 0.91664 1.20806 0.83237 0.82845 0.90171 1.90484 1.35470 1.54155 1.69622 1.41957 1.08274 1.60315 1.10943 1.19628 0.94753 1.43754 0.87686 0.90364 1.26007 0.94174 0.97079 1.04157 1.69672 0.99067 1.48645 1.38911 0.84959 0.77727 0.78531 0.77318 1.19682 1.19692 1.19827 0.91273 0.94126 0.91635 0.92977 0.94021 0.93320 0.89089 0.90389 0.91016 0.91408 0.91103 0.74792 0.78767 0.73130 0.89418 0.85909 0.89653 0.87170 0.91895 0.77133 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 10.07 71.98 0.72 -2.71 16 2 C 0.05 1.57 5.18 86.30 0.45 2.02 16 3 N -0.53 -15.92 4.10 -900.78 -3.69 -19.62 16 4 C 0.06 1.21 4.81 86.30 0.41 1.62 16 5 C -0.12 -2.10 5.47 30.59 0.17 -1.94 16 6 C 0.13 2.21 5.68 86.38 0.49 2.70 16 7 N -0.71 -11.81 5.54 -466.98 -2.59 -14.39 16 8 C 0.59 12.53 7.78 86.47 0.67 13.20 16 9 O -0.58 -15.29 14.82 -4.27 -0.06 -15.35 16 10 C -0.11 -2.17 6.91 40.01 0.28 -1.89 16 11 C 0.04 0.69 11.37 84.10 0.96 1.65 16 12 N -0.53 -10.42 11.20 -199.55 -2.24 -12.65 16 13 C 0.22 2.88 12.52 180.33 2.26 5.14 16 14 N -0.43 -6.59 3.17 -539.80 -1.71 -8.30 16 15 C 0.06 0.61 10.79 127.77 1.38 1.99 16 16 C 0.06 1.86 5.27 85.56 0.45 2.31 16 17 C 0.44 20.63 7.30 87.66 0.64 21.27 16 18 O -0.61 -33.10 14.12 -3.06 -0.04 -33.15 16 19 N -0.58 -29.33 5.29 -306.99 -1.62 -30.95 16 20 C -0.33 -18.56 9.68 84.04 0.81 -17.75 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 23 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 24 Si 0.99 43.02 29.55 68.60 2.03 45.04 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 28 H 0.07 1.48 6.68 -2.39 -0.02 1.46 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 2.07 5.85 -2.38 -0.01 2.05 16 32 H 0.04 1.10 8.00 -2.39 -0.02 1.08 16 33 H 0.05 0.92 7.99 -2.39 -0.02 0.90 16 34 H 0.09 1.66 6.45 -2.39 -0.02 1.64 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 1.33 6.76 -2.39 -0.02 1.31 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.42 5.28 7.42 -92.71 -0.69 4.59 16 40 H 0.20 2.54 7.47 -2.91 -0.02 2.52 16 41 H 0.25 0.83 8.06 -2.91 -0.02 0.81 16 42 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.12 0.29 8.14 -2.38 -0.02 0.27 16 44 H 0.08 1.26 6.30 -2.39 -0.02 1.24 16 45 H 0.11 3.18 6.63 -2.39 -0.02 3.16 16 46 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 47 H 0.40 19.12 7.90 -92.70 -0.73 18.38 16 48 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -77.57 396.59 0.09 -77.49 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: -0.42 Total: 34.02 kcal Atomic # 6 Polarization: 17.14 SS G_CDS: 10.16 Total: 27.29 kcal Atomic # 7 Polarization: -123.78 SS G_CDS: -11.57 Total: -135.35 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -0.11 Total: -48.49 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -77.57 0.09 -77.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265122085.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.574 kcal (2) G-P(sol) polarization free energy of solvation -77.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds