Wall clock time and date at job start Tue Mar 31 2020 21:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35487 * 126.97907 * 2 1 4 4 N 1.30518 * 107.30777 * 179.97438 * 3 2 1 5 5 N 1.28599 * 109.67237 * 359.73028 * 4 3 2 6 6 C 1.30523 * 109.67350 * 0.44615 * 5 4 3 7 7 C 1.50692 * 126.34998 * 179.82437 * 6 5 4 8 8 O 1.42904 * 109.47364 * 269.68561 * 7 6 5 9 9 C 1.42893 * 114.00014 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47000 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00020 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99867 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99609 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.46955 * 324.99659 * 13 12 10 15 15 C 1.52996 * 109.47258 * 85.00044 * 13 12 10 16 16 C 1.52997 * 109.47131 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46991 * 299.99311 * 16 15 13 18 18 C 1.53006 * 109.46626 * 60.00378 * 17 16 15 19 19 H 1.09001 * 109.46801 * 59.99811 * 18 17 16 20 20 N 1.46500 * 109.46998 * 179.97438 * 18 17 16 21 21 C 1.36944 * 120.00017 * 275.00375 * 20 18 17 22 22 H 1.07997 * 119.99813 * 359.97438 * 21 20 18 23 23 C 1.38806 * 119.99784 * 180.02562 * 21 20 18 24 24 N 1.31621 * 120.00406 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99911 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46917 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47165 * 119.99626 * 25 23 21 28 28 H 1.48493 * 109.47310 * 240.00027 * 25 23 21 29 29 C 1.52997 * 109.47127 * 299.99539 * 18 17 16 30 30 H 1.08997 * 109.47296 * 270.00510 * 1 2 3 31 31 H 1.09003 * 109.46988 * 30.00538 * 1 2 3 32 32 H 1.08999 * 109.47112 * 149.99882 * 1 2 3 33 33 H 1.07997 * 126.34920 * 359.97438 * 3 2 1 34 34 H 1.09006 * 109.47115 * 149.68891 * 7 6 5 35 35 H 1.08997 * 109.47019 * 29.68971 * 7 6 5 36 36 H 1.08999 * 109.46905 * 60.00699 * 9 8 7 37 37 H 1.08993 * 109.47772 * 300.00517 * 9 8 7 38 38 H 0.97001 * 120.00320 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.46993 * 300.00050 * 15 13 12 40 40 H 1.09000 * 109.47380 * 59.99156 * 15 13 12 41 41 H 1.09002 * 109.47153 * 179.97438 * 16 15 13 42 42 H 1.08993 * 109.47194 * 60.00154 * 16 15 13 43 43 H 1.08993 * 109.47839 * 300.00447 * 17 16 15 44 44 H 1.09000 * 109.47160 * 180.02562 * 17 16 15 45 45 H 0.96995 * 120.00293 * 94.99410 * 20 18 17 46 46 H 0.96997 * 120.00066 * 180.02562 * 24 23 21 47 47 H 1.09002 * 109.47153 * 180.02562 * 29 18 17 48 48 H 1.08996 * 109.46952 * 300.00302 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2800 1.0823 0.0000 4 7 3.5091 0.6430 0.0006 5 7 3.5091 -0.6430 0.0066 6 6 2.2801 -1.0825 0.0006 7 6 1.8477 -2.5260 0.0008 8 8 1.7114 -2.9827 -1.3464 9 6 1.3032 -4.3475 -1.4589 10 6 1.1927 -4.7203 -2.9149 11 8 1.4396 -3.8983 -3.7718 12 7 0.8194 -5.9672 -3.2648 13 6 0.7125 -6.3297 -4.6803 14 1 0.3551 -5.4714 -5.2491 15 6 2.0867 -6.7521 -5.2038 16 6 1.9749 -7.1313 -6.6818 17 6 0.9910 -8.2926 -6.8374 18 6 -0.3833 -7.8701 -6.3138 19 1 -0.7409 -7.0121 -6.8831 20 7 -1.3256 -8.9819 -6.4633 21 6 -1.9811 -9.1689 -7.6510 22 1 -1.8037 -8.4966 -8.4774 23 6 -2.8743 -10.2219 -7.7924 24 7 -3.0910 -11.0410 -6.7851 25 14 -3.7690 -10.4766 -9.4123 26 1 -3.3534 -9.4275 -10.3776 27 1 -3.4310 -11.8152 -9.9594 28 1 -5.2343 -10.3893 -9.1877 29 6 -0.2715 -7.4910 -4.8358 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.9702 2.1169 -0.0004 34 1 0.8907 -2.6186 0.5144 35 1 2.5958 -3.1293 0.5151 36 1 0.3351 -4.4782 -0.9756 37 1 2.0403 -4.9883 -0.9751 38 1 0.6223 -6.6248 -2.5795 39 1 2.7878 -5.9250 -5.0925 40 1 2.4442 -7.6103 -4.6349 41 1 2.9540 -7.4318 -7.0549 42 1 1.6173 -6.2733 -7.2510 43 1 1.3485 -9.1506 -6.2682 44 1 0.9116 -8.5630 -7.8903 45 1 -1.4852 -9.5855 -5.7211 46 1 -3.7149 -11.7770 -6.8841 47 1 -1.2506 -7.1905 -4.4627 48 1 0.0862 -8.3490 -4.2667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266072118.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:17 Heat of formation + Delta-G solvation = 6.463563 kcal Electronic energy + Delta-G solvation = -28422.416718 eV Core-core repulsion = 24321.224537 eV Total energy + Delta-G solvation = -4101.192180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.51919 -40.14891 -38.53700 -37.56381 -35.49224 -34.71214 -33.39568 -32.11356 -31.16065 -30.04142 -28.48997 -28.11185 -27.62329 -26.38099 -23.76368 -22.81776 -22.14176 -21.56274 -21.40928 -20.40853 -19.46521 -17.95316 -17.57130 -17.33271 -16.87409 -16.78947 -16.51753 -15.80426 -15.55552 -15.34333 -14.68647 -14.55538 -14.39523 -13.95144 -13.88628 -13.76275 -13.56905 -13.37060 -13.16878 -12.86745 -12.59201 -12.42851 -12.16382 -12.06507 -11.89581 -11.02136 -10.97208 -10.91457 -10.80185 -10.74609 -10.64834 -10.37618 -10.32087 -10.29561 -10.19329 -10.06743 -9.78918 -9.70669 -9.57665 -9.04677 -8.89669 -6.98998 -5.79953 -3.08494 1.19888 1.97502 2.33806 2.48714 2.75374 3.41168 3.47386 3.49198 3.50383 3.98548 4.07510 4.15642 4.33284 4.47441 4.47793 4.55466 4.64297 4.68561 4.77734 4.80608 4.96135 5.06998 5.08301 5.30200 5.38384 5.47865 5.57904 5.66129 5.66188 5.71445 5.85130 5.94632 5.99972 6.12598 6.26751 6.29461 6.30746 6.38337 6.50443 6.53128 6.59876 6.70667 6.94516 7.10067 7.41078 7.69064 8.12545 8.31349 8.38885 9.50255 10.07224 10.41976 11.42810 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023360 B = 0.001743 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.362543 B =16060.452601 C =16530.576295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.468 5.468 3 C 0.156 3.844 4 N -0.296 5.296 5 N -0.271 5.271 6 C 0.174 3.826 7 C 0.150 3.850 8 O -0.356 6.356 9 C 0.044 3.956 10 C 0.512 3.488 11 O -0.518 6.518 12 N -0.722 5.722 13 C 0.151 3.849 14 H 0.088 0.912 15 C -0.125 4.125 16 C -0.115 4.115 17 C -0.137 4.137 18 C 0.183 3.817 19 H 0.048 0.952 20 N -0.724 5.724 21 C -0.236 4.236 22 H 0.071 0.929 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.129 4.129 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.222 0.778 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.400 0.600 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.068 0.932 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.617 18.511 19.043 27.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.159 5.159 3 C -0.131 4.131 4 N -0.136 5.136 5 N -0.113 5.113 6 C -0.093 4.093 7 C 0.071 3.929 8 O -0.273 6.273 9 C -0.036 4.036 10 C 0.296 3.704 11 O -0.393 6.393 12 N -0.374 5.374 13 C 0.047 3.953 14 H 0.106 0.894 15 C -0.163 4.163 16 C -0.154 4.154 17 C -0.177 4.177 18 C 0.072 3.928 19 H 0.066 0.934 20 N -0.365 5.365 21 C -0.368 4.368 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.167 4.167 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.238 0.762 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.234 0.766 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.216 0.784 46 H 0.064 0.936 47 H 0.087 0.913 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.204 19.248 18.070 27.647 hybrid contribution -2.237 -0.831 -0.077 2.388 sum 5.967 18.417 17.993 26.430 Atomic orbital electron populations 1.22204 0.74904 1.06053 1.04236 1.46189 1.09496 1.06685 1.53572 1.26522 0.87157 0.94995 1.04437 1.74306 1.18118 1.03055 1.18152 1.74280 1.16895 1.03338 1.16794 1.24255 0.87467 0.91379 1.06211 1.20501 1.01103 0.86075 0.85256 1.88094 1.89346 1.25740 1.24139 1.22289 1.01291 0.84377 0.95654 1.20093 0.77598 0.82538 0.90134 1.90759 1.47594 1.49351 1.51580 1.46047 1.69832 1.12152 1.09374 1.21052 0.95953 0.98420 0.79898 0.89411 1.21888 0.96551 1.00813 0.97079 1.21485 0.99571 0.99312 0.94995 1.22290 0.96528 0.96830 1.02062 1.20103 0.89451 0.91709 0.91490 0.93352 1.42404 1.48293 1.31312 1.14451 1.19299 1.17172 1.09338 0.90950 0.91068 1.24735 1.00418 0.98200 0.97678 1.69666 1.39552 1.18672 1.30343 0.86133 0.79416 0.77550 0.83212 1.20528 1.21888 1.21922 1.22089 0.98317 0.96562 0.99781 0.89661 0.88533 0.88629 0.76195 0.90950 0.89017 0.89861 0.89585 0.76639 0.92114 0.91988 0.92442 0.92173 0.92640 0.91868 0.78351 0.93605 0.91307 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.18 10.89 59.85 0.65 0.84 16 2 N -0.47 -3.42 3.15 -122.69 -0.39 -3.80 16 3 C 0.16 1.24 12.74 -89.95 -1.15 0.09 16 4 N -0.30 -3.70 12.21 29.68 0.36 -3.34 16 5 N -0.27 -3.62 12.21 32.79 0.40 -3.22 16 6 C 0.17 1.74 7.66 -154.98 -1.19 0.55 16 7 C 0.15 1.06 6.11 36.00 0.22 1.28 16 8 O -0.36 -3.72 9.86 -55.14 -0.54 -4.27 16 9 C 0.04 0.33 6.42 36.01 0.23 0.57 16 10 C 0.51 6.12 7.87 -10.98 -0.09 6.04 16 11 O -0.52 -8.86 16.16 -14.35 -0.23 -9.09 16 12 N -0.72 -7.60 5.08 -53.80 -0.27 -7.87 16 13 C 0.15 2.02 2.46 -67.93 -0.17 1.85 16 14 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 15 C -0.12 -1.66 5.49 -26.73 -0.15 -1.81 16 16 C -0.11 -1.65 5.92 -26.73 -0.16 -1.80 16 17 C -0.14 -2.36 5.50 -26.73 -0.15 -2.51 16 18 C 0.18 3.46 2.77 -67.93 -0.19 3.27 16 19 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 20 N -0.72 -17.44 5.12 -53.42 -0.27 -17.72 16 21 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 25 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 C -0.13 -1.92 4.86 -26.73 -0.13 -2.05 16 30 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 31 H 0.10 0.10 8.14 -51.93 -0.42 -0.33 16 32 H 0.10 0.28 7.81 -51.93 -0.41 -0.13 16 33 H 0.22 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.07 0.26 7.86 -51.93 -0.41 -0.15 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.40 2.96 8.60 -40.82 -0.35 2.60 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.38 9.74 7.80 -40.82 -0.32 9.42 16 46 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -38.82 399.61 -9.48 -48.30 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.76 Total: 5.52 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.50 Total: -0.76 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: 0.55 Total: -62.83 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.78 Total: -13.36 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.82 -9.48 -48.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266072118.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.767 kcal (2) G-P(sol) polarization free energy of solvation -38.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds