Wall clock time and date at job start Tue Mar 31 2020 21:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35487 * 126.97907 * 2 1 4 4 N 1.30518 * 107.30777 * 179.97438 * 3 2 1 5 5 N 1.28599 * 109.67237 * 359.73028 * 4 3 2 6 6 C 1.30523 * 109.67350 * 0.44615 * 5 4 3 7 7 C 1.50692 * 126.34998 * 179.82437 * 6 5 4 8 8 O 1.42904 * 109.47364 * 269.68561 * 7 6 5 9 9 C 1.42893 * 114.00014 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47000 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00020 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99867 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99609 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.46955 * 324.99659 * 13 12 10 15 15 C 1.52996 * 109.47258 * 85.00044 * 13 12 10 16 16 C 1.52997 * 109.47131 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46991 * 299.99311 * 16 15 13 18 18 C 1.53006 * 109.46626 * 60.00378 * 17 16 15 19 19 H 1.09001 * 109.46801 * 59.99811 * 18 17 16 20 20 N 1.46500 * 109.46998 * 179.97438 * 18 17 16 21 21 C 1.36944 * 120.00017 * 275.00375 * 20 18 17 22 22 H 1.07997 * 119.99813 * 359.97438 * 21 20 18 23 23 C 1.38806 * 119.99784 * 180.02562 * 21 20 18 24 24 N 1.31621 * 120.00406 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99911 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46917 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47165 * 119.99626 * 25 23 21 28 28 H 1.48493 * 109.47310 * 240.00027 * 25 23 21 29 29 C 1.52997 * 109.47127 * 299.99539 * 18 17 16 30 30 H 1.08997 * 109.47296 * 270.00510 * 1 2 3 31 31 H 1.09003 * 109.46988 * 30.00538 * 1 2 3 32 32 H 1.08999 * 109.47112 * 149.99882 * 1 2 3 33 33 H 1.07997 * 126.34920 * 359.97438 * 3 2 1 34 34 H 1.09006 * 109.47115 * 149.68891 * 7 6 5 35 35 H 1.08997 * 109.47019 * 29.68971 * 7 6 5 36 36 H 1.08999 * 109.46905 * 60.00699 * 9 8 7 37 37 H 1.08993 * 109.47772 * 300.00517 * 9 8 7 38 38 H 0.97001 * 120.00320 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.46993 * 300.00050 * 15 13 12 40 40 H 1.09000 * 109.47380 * 59.99156 * 15 13 12 41 41 H 1.09002 * 109.47153 * 179.97438 * 16 15 13 42 42 H 1.08993 * 109.47194 * 60.00154 * 16 15 13 43 43 H 1.08993 * 109.47839 * 300.00447 * 17 16 15 44 44 H 1.09000 * 109.47160 * 180.02562 * 17 16 15 45 45 H 0.96995 * 120.00293 * 94.99410 * 20 18 17 46 46 H 0.96997 * 120.00066 * 180.02562 * 24 23 21 47 47 H 1.09002 * 109.47153 * 180.02562 * 29 18 17 48 48 H 1.08996 * 109.46952 * 300.00302 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2800 1.0823 0.0000 4 7 3.5091 0.6430 0.0006 5 7 3.5091 -0.6430 0.0066 6 6 2.2801 -1.0825 0.0006 7 6 1.8477 -2.5260 0.0008 8 8 1.7114 -2.9827 -1.3464 9 6 1.3032 -4.3475 -1.4589 10 6 1.1927 -4.7203 -2.9149 11 8 1.4396 -3.8983 -3.7718 12 7 0.8194 -5.9672 -3.2648 13 6 0.7125 -6.3297 -4.6803 14 1 0.3551 -5.4714 -5.2491 15 6 2.0867 -6.7521 -5.2038 16 6 1.9749 -7.1313 -6.6818 17 6 0.9910 -8.2926 -6.8374 18 6 -0.3833 -7.8701 -6.3138 19 1 -0.7409 -7.0121 -6.8831 20 7 -1.3256 -8.9819 -6.4633 21 6 -1.9811 -9.1689 -7.6510 22 1 -1.8037 -8.4966 -8.4774 23 6 -2.8743 -10.2219 -7.7924 24 7 -3.0910 -11.0410 -6.7851 25 14 -3.7690 -10.4766 -9.4123 26 1 -3.3534 -9.4275 -10.3776 27 1 -3.4310 -11.8152 -9.9594 28 1 -5.2343 -10.3893 -9.1877 29 6 -0.2715 -7.4910 -4.8358 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.9702 2.1169 -0.0004 34 1 0.8907 -2.6186 0.5144 35 1 2.5958 -3.1293 0.5151 36 1 0.3351 -4.4782 -0.9756 37 1 2.0403 -4.9883 -0.9751 38 1 0.6223 -6.6248 -2.5795 39 1 2.7878 -5.9250 -5.0925 40 1 2.4442 -7.6103 -4.6349 41 1 2.9540 -7.4318 -7.0549 42 1 1.6173 -6.2733 -7.2510 43 1 1.3485 -9.1506 -6.2682 44 1 0.9116 -8.5630 -7.8903 45 1 -1.4852 -9.5855 -5.7211 46 1 -3.7149 -11.7770 -6.8841 47 1 -1.2506 -7.1905 -4.4627 48 1 0.0862 -8.3490 -4.2667 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266072118.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:16 Heat of formation + Delta-G solvation = -20.635422 kcal Electronic energy + Delta-G solvation = -28423.591818 eV Core-core repulsion = 24321.224537 eV Total energy + Delta-G solvation = -4102.367280 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.14429 -41.12947 -39.54185 -38.52007 -36.22065 -36.01381 -34.83800 -32.96601 -32.72442 -31.12417 -29.70034 -28.88848 -28.38240 -27.01737 -25.69586 -23.41586 -23.34355 -22.80239 -22.05029 -21.45854 -20.82222 -19.22269 -18.50572 -18.18665 -17.81450 -17.37235 -17.35542 -16.79433 -16.33009 -16.20352 -16.10795 -15.61631 -15.45322 -15.30778 -15.00419 -14.97017 -14.53627 -14.28173 -14.20335 -13.70307 -13.59899 -13.41334 -13.17599 -13.01472 -12.90868 -12.83847 -12.59477 -12.25658 -12.13076 -12.02309 -11.97257 -11.65219 -11.47704 -11.45743 -11.38097 -11.14397 -10.88773 -10.84152 -10.79928 -10.43616 -10.06006 -8.99022 -7.93951 -5.21288 0.62054 1.47263 1.47951 1.51358 1.57497 1.60512 1.68503 1.98038 2.56386 2.89831 3.39420 3.44975 3.62873 3.65356 3.78588 3.85516 3.86831 3.97365 4.04957 4.18851 4.26339 4.27776 4.31442 4.34096 4.39212 4.45540 4.53837 4.58549 4.58879 4.67847 4.69042 4.77228 4.86246 5.02772 5.09095 5.12326 5.17217 5.22355 5.35681 5.47484 5.50957 5.54353 5.65759 5.84174 5.92671 6.29378 6.59849 7.27676 7.35854 7.64064 8.11482 8.35531 9.29416 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023360 B = 0.001743 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.362543 B =16060.452601 C =16530.576295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.466 5.466 3 C 0.167 3.833 4 N -0.352 5.352 5 N -0.326 5.326 6 C 0.164 3.836 7 C 0.150 3.850 8 O -0.395 6.395 9 C 0.049 3.951 10 C 0.507 3.493 11 O -0.578 6.578 12 N -0.707 5.707 13 C 0.160 3.840 14 H 0.064 0.936 15 C -0.117 4.117 16 C -0.108 4.108 17 C -0.126 4.126 18 C 0.176 3.824 19 H 0.034 0.966 20 N -0.734 5.734 21 C -0.236 4.236 22 H 0.071 0.929 23 C -0.074 4.074 24 N -0.967 5.967 25 Si 0.967 3.033 26 H -0.270 1.270 27 H -0.294 1.294 28 H -0.293 1.293 29 C -0.113 4.113 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.264 0.736 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.419 0.581 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.039 0.961 45 H 0.375 0.625 46 H 0.250 0.750 47 H 0.065 0.935 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.941 19.015 20.633 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.156 5.156 3 C -0.121 4.121 4 N -0.192 5.192 5 N -0.168 5.168 6 C -0.105 4.105 7 C 0.072 3.928 8 O -0.313 6.313 9 C -0.030 4.030 10 C 0.294 3.706 11 O -0.457 6.457 12 N -0.361 5.361 13 C 0.055 3.945 14 H 0.082 0.918 15 C -0.156 4.156 16 C -0.146 4.146 17 C -0.166 4.166 18 C 0.067 3.933 19 H 0.052 0.948 20 N -0.374 5.374 21 C -0.368 4.368 22 H 0.089 0.911 23 C -0.266 4.266 24 N -0.618 5.618 25 Si 0.797 3.203 26 H -0.194 1.194 27 H -0.221 1.221 28 H -0.221 1.221 29 C -0.151 4.151 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.114 0.886 33 H 0.279 0.721 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.256 0.744 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.207 0.793 46 H 0.059 0.941 47 H 0.083 0.917 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.536 19.759 19.693 28.897 hybrid contribution -2.046 -0.905 -0.566 2.307 sum 5.491 18.855 19.127 27.413 Atomic orbital electron populations 1.22567 0.72118 1.07035 1.06225 1.46478 1.11049 1.05717 1.52363 1.27314 0.86192 0.96742 1.01872 1.74164 1.20939 1.03245 1.20831 1.74139 1.19408 1.04124 1.19142 1.24806 0.87203 0.93190 1.05294 1.20774 1.03465 0.84430 0.84166 1.88026 1.89925 1.27151 1.26219 1.22414 1.04428 0.83821 0.92319 1.20957 0.75985 0.81813 0.91815 1.90738 1.50293 1.51004 1.53655 1.45822 1.69172 1.12578 1.08511 1.20705 0.95462 0.96690 0.81634 0.91783 1.21813 0.96236 1.01191 0.96325 1.21414 0.99405 0.97764 0.96060 1.22096 0.96177 0.97973 1.00391 1.20315 0.89113 0.89632 0.94260 0.94822 1.42557 1.49128 1.32436 1.13279 1.19610 1.16582 1.08721 0.91903 0.91114 1.25463 1.01882 0.98530 1.00744 1.69797 1.40560 1.19325 1.32092 0.85165 0.77943 0.77321 0.79914 1.19428 1.22128 1.22066 1.21857 0.98790 0.97621 0.96866 0.87103 0.86645 0.88641 0.72052 0.86853 0.88038 0.85739 0.86472 0.74369 0.92535 0.90351 0.90781 0.92702 0.92566 0.94168 0.79307 0.94077 0.91666 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.14 10.89 127.77 1.39 1.54 16 2 N -0.47 -5.98 3.15 -542.07 -1.71 -7.69 16 3 C 0.17 2.46 12.74 180.12 2.30 4.76 16 4 N -0.35 -9.00 12.21 -60.00 -0.73 -9.73 16 5 N -0.33 -8.94 12.21 -50.16 -0.61 -9.55 16 6 C 0.16 3.14 7.66 137.97 1.06 4.20 16 7 C 0.15 1.77 6.11 71.23 0.44 2.21 16 8 O -0.40 -7.50 9.86 -129.94 -1.28 -8.78 16 9 C 0.05 0.58 6.42 71.24 0.46 1.04 16 10 C 0.51 11.23 7.87 87.66 0.69 11.92 16 11 O -0.58 -19.74 16.16 16.00 0.26 -19.48 16 12 N -0.71 -13.26 5.08 -442.52 -2.25 -15.51 16 13 C 0.16 4.10 2.46 44.99 0.11 4.21 16 14 H 0.06 1.99 7.58 -2.39 -0.02 1.97 16 15 C -0.12 -2.92 5.49 30.59 0.17 -2.75 16 16 C -0.11 -2.97 5.92 30.59 0.18 -2.79 16 17 C -0.13 -4.31 5.50 30.60 0.17 -4.14 16 18 C 0.18 6.63 2.77 44.99 0.12 6.75 16 19 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 20 N -0.73 -35.60 5.12 -322.93 -1.65 -37.25 16 21 C -0.24 -12.91 9.93 84.03 0.83 -12.08 16 22 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 23 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 24 N -0.97 -57.75 13.06 21.65 0.28 -57.47 16 25 Si 0.97 45.79 29.55 68.60 2.03 47.82 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 28 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 29 C -0.11 -3.23 4.86 30.59 0.15 -3.08 16 30 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.09 0.28 7.81 -2.39 -0.02 0.26 16 33 H 0.26 0.95 8.06 -2.91 -0.02 0.92 16 34 H 0.11 0.34 7.86 -2.38 -0.02 0.32 16 35 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.42 4.73 8.60 -92.71 -0.80 3.94 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 43 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 45 H 0.37 19.20 7.80 -92.71 -0.72 18.47 16 46 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 47 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -89.46 399.61 2.32 -87.14 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -0.54 Total: 22.46 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 8.53 Total: 8.06 kcal Atomic # 7 Polarization: -130.54 SS G_CDS: -6.67 Total: -137.21 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -1.02 Total: -28.26 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -89.46 2.32 -87.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266072118.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.508 kcal (2) G-P(sol) polarization free energy of solvation -89.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds