Wall clock time and date at job start Tue Mar 31 2020 21:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35494 * 126.97636 * 2 1 4 4 N 1.30525 * 107.30495 * 180.22602 * 3 2 1 5 5 N 1.28597 * 109.67170 * 359.77186 * 4 3 2 6 6 C 1.30516 * 109.67461 * 0.02562 * 5 4 3 7 7 C 1.50703 * 126.35032 * 179.97438 * 6 5 4 8 8 O 1.42908 * 109.47226 * 90.01864 * 7 6 5 9 9 C 1.42894 * 114.00013 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47002 * 180.02562 * 9 8 7 11 11 O 1.21287 * 120.00051 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00006 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99811 * 179.97438 * 12 10 9 14 14 H 1.08993 * 109.47068 * 34.99431 * 13 12 10 15 15 C 1.52997 * 109.46949 * 274.99482 * 13 12 10 16 16 C 1.52996 * 109.47131 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46972 * 60.00459 * 16 15 13 18 18 C 1.52997 * 109.46817 * 299.99733 * 17 16 15 19 19 H 1.09001 * 109.47502 * 300.00518 * 18 17 16 20 20 N 1.46500 * 109.47007 * 180.02562 * 18 17 16 21 21 C 1.36936 * 120.00035 * 85.00367 * 20 18 17 22 22 H 1.07997 * 120.00191 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99597 * 180.02562 * 21 20 18 24 24 N 1.31613 * 120.00617 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99539 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47409 * 59.99747 * 25 23 21 27 27 H 1.48499 * 109.46935 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47135 * 299.99727 * 25 23 21 29 29 C 1.52999 * 109.46691 * 155.00013 * 13 12 10 30 30 H 1.09007 * 109.46955 * 270.15346 * 1 2 3 31 31 H 1.08997 * 109.47415 * 30.15798 * 1 2 3 32 32 H 1.09004 * 109.47143 * 150.15956 * 1 2 3 33 33 H 1.07997 * 126.34873 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.46862 * 330.02298 * 7 6 5 35 35 H 1.08993 * 109.47295 * 210.02242 * 7 6 5 36 36 H 1.08997 * 109.47368 * 59.99831 * 9 8 7 37 37 H 1.09002 * 109.46975 * 300.00166 * 9 8 7 38 38 H 0.97000 * 119.99910 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.47289 * 60.00076 * 15 13 12 40 40 H 1.09000 * 109.47611 * 300.00647 * 15 13 12 41 41 H 1.08996 * 109.47452 * 300.00000 * 16 15 13 42 42 H 1.09000 * 109.47054 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.47070 * 179.97438 * 17 16 15 44 44 H 1.08996 * 109.47407 * 59.99513 * 17 16 15 45 45 H 0.97002 * 120.00030 * 265.00025 * 20 18 17 46 46 H 0.96997 * 120.00420 * 180.02562 * 24 23 21 47 47 H 1.08993 * 109.47839 * 59.99891 * 29 13 12 48 48 H 1.09000 * 109.47160 * 299.99453 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5090 0.6431 -0.0049 5 7 3.5091 -0.6429 -0.0031 6 6 2.2801 -1.0823 0.0024 7 6 1.8477 -2.5260 0.0056 8 8 1.7162 -2.9809 1.3540 9 6 1.3085 -4.3456 1.4698 10 6 1.2020 -4.7160 2.9266 11 8 1.4512 -3.8926 3.7815 12 7 0.8308 -5.9628 3.2795 13 6 0.7278 -6.3231 4.6958 14 1 0.3711 -5.4642 5.2642 15 6 2.1037 -6.7435 5.2164 16 6 1.9961 -7.1204 6.6953 17 6 1.0135 -8.2822 6.8553 18 6 -0.3624 -7.8618 6.3347 19 1 -0.7193 -7.0032 6.9034 20 7 -1.3034 -8.9741 6.4884 21 6 -1.9557 -9.1597 7.6781 22 1 -1.7762 -8.4863 8.5031 23 6 -2.8469 -10.2139 7.8238 24 7 -3.0653 -11.0348 6.8185 25 14 -3.7362 -10.4674 9.4469 26 1 -4.5491 -9.2646 9.7591 27 1 -4.6245 -11.6531 9.3446 28 1 -2.7413 -10.6867 10.5275 29 6 -0.2549 -7.4847 4.8563 30 1 -0.3633 0.0028 1.0277 31 1 -0.3634 0.8885 -0.5163 32 1 -0.3634 -0.8914 -0.5114 33 1 1.9701 2.1170 -0.0004 34 1 2.5941 -3.1299 -0.5104 35 1 0.8890 -2.6192 -0.5044 36 1 2.0439 -4.9870 0.9842 37 1 0.3386 -4.4769 0.9900 38 1 0.6318 -6.6214 2.5958 39 1 2.8039 -5.9159 5.1020 40 1 2.4605 -7.6023 4.6480 41 1 1.6392 -6.2618 7.2641 42 1 2.9764 -7.4194 7.0663 43 1 0.9372 -8.5511 7.9089 44 1 1.3703 -9.1408 6.2865 45 1 -1.4644 -9.5791 5.7475 46 1 -3.6884 -11.7713 6.9203 47 1 0.1017 -8.3436 4.2879 48 1 -1.2352 -7.1852 4.4854 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266072119.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:23 Heat of formation + Delta-G solvation = 6.910256 kcal Electronic energy + Delta-G solvation = -28420.069189 eV Core-core repulsion = 24318.896378 eV Total energy + Delta-G solvation = -4101.172810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.51962 -40.14462 -38.53274 -37.55982 -35.49776 -34.70780 -33.39131 -32.11324 -31.15848 -30.03843 -28.48622 -28.11146 -27.62361 -26.38840 -23.75600 -22.81854 -22.13880 -21.55605 -21.40489 -20.40544 -19.46147 -17.95180 -17.58043 -17.33572 -16.86606 -16.79099 -16.50324 -15.79762 -15.56142 -15.34366 -14.68725 -14.55766 -14.39403 -13.94273 -13.89723 -13.76901 -13.56375 -13.38927 -13.16246 -12.85487 -12.58361 -12.41667 -12.16018 -12.06011 -11.89471 -11.01553 -10.96987 -10.88510 -10.79803 -10.74120 -10.64738 -10.37233 -10.32309 -10.30947 -10.19229 -10.09796 -9.79060 -9.69885 -9.57322 -9.04179 -8.88423 -6.98772 -5.79198 -3.07803 1.20371 1.97324 2.34029 2.49036 2.75564 3.42623 3.47188 3.47814 3.50601 3.97982 4.07714 4.11733 4.29864 4.45850 4.50659 4.55943 4.66125 4.69473 4.78075 4.81779 4.96423 5.06942 5.07973 5.30518 5.38684 5.48188 5.58191 5.65924 5.66467 5.71795 5.85433 5.95015 6.00370 6.12935 6.27048 6.29731 6.30902 6.38607 6.50714 6.53524 6.60218 6.71020 6.94873 7.10454 7.41392 7.68476 8.12881 8.31422 8.39570 9.50777 10.07768 10.42602 11.43412 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023373 B = 0.001743 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.698330 B =16063.685535 C =16533.701207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.468 5.468 3 C 0.156 3.844 4 N -0.296 5.296 5 N -0.270 5.270 6 C 0.174 3.826 7 C 0.150 3.850 8 O -0.356 6.356 9 C 0.044 3.956 10 C 0.512 3.488 11 O -0.518 6.518 12 N -0.722 5.722 13 C 0.151 3.849 14 H 0.088 0.912 15 C -0.125 4.125 16 C -0.115 4.115 17 C -0.137 4.137 18 C 0.183 3.817 19 H 0.048 0.952 20 N -0.724 5.724 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.129 4.129 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.222 0.778 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.400 0.600 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.065 0.935 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.505 18.448 -19.184 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.159 5.159 3 C -0.131 4.131 4 N -0.136 5.136 5 N -0.113 5.113 6 C -0.093 4.093 7 C 0.071 3.929 8 O -0.273 6.273 9 C -0.036 4.036 10 C 0.296 3.704 11 O -0.393 6.393 12 N -0.374 5.374 13 C 0.047 3.953 14 H 0.106 0.894 15 C -0.163 4.163 16 C -0.154 4.154 17 C -0.177 4.177 18 C 0.072 3.928 19 H 0.066 0.934 20 N -0.364 5.364 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.167 4.167 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.238 0.762 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.234 0.766 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.087 19.170 -18.225 27.660 hybrid contribution -2.231 -0.818 0.107 2.378 sum 5.857 18.352 -18.118 26.445 Atomic orbital electron populations 1.22193 0.74905 1.05221 1.04942 1.46190 1.09494 1.06703 1.53542 1.26527 0.87143 0.94986 1.04476 1.74308 1.18105 1.03056 1.18148 1.74278 1.16886 1.03332 1.16803 1.24249 0.87464 0.91393 1.06236 1.20497 1.01033 0.86097 0.85269 1.88097 1.89350 1.25757 1.24053 1.22287 1.01285 0.84392 0.95640 1.20093 0.77596 0.82539 0.90127 1.90760 1.47530 1.49249 1.51749 1.46047 1.69868 1.12131 1.09360 1.21048 0.95957 0.98444 0.79872 0.89418 1.21887 0.96540 1.00820 0.97080 1.21486 0.99575 0.99317 0.94987 1.22291 0.96539 0.96821 1.02058 1.20090 0.89461 0.91716 0.91483 0.93365 1.42386 1.48469 1.31204 1.14370 1.19204 1.17494 1.09328 0.90889 0.91188 1.24730 1.00415 0.98147 0.97666 1.69641 1.39567 1.18542 1.30507 0.86278 0.79440 0.77147 0.83391 1.21283 1.21727 1.21268 1.22080 0.98327 0.96557 0.99781 0.89269 0.88656 0.89025 0.76191 0.89038 0.91011 0.89589 0.89876 0.76643 0.92115 0.91990 0.92175 0.92445 0.91872 0.92644 0.78347 0.93502 0.91638 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.19 11.04 59.85 0.66 0.85 16 2 N -0.47 -3.41 3.15 -122.68 -0.39 -3.80 16 3 C 0.16 1.23 12.74 -89.94 -1.15 0.09 16 4 N -0.30 -3.70 12.21 29.69 0.36 -3.33 16 5 N -0.27 -3.62 12.21 32.80 0.40 -3.22 16 6 C 0.17 1.74 7.66 -154.99 -1.19 0.55 16 7 C 0.15 1.07 6.29 36.01 0.23 1.29 16 8 O -0.36 -3.74 9.86 -55.14 -0.54 -4.29 16 9 C 0.04 0.34 6.42 36.00 0.23 0.57 16 10 C 0.51 6.15 7.87 -10.98 -0.09 6.06 16 11 O -0.52 -8.89 16.16 -14.36 -0.23 -9.13 16 12 N -0.72 -7.63 5.08 -53.81 -0.27 -7.90 16 13 C 0.15 2.02 2.46 -67.93 -0.17 1.86 16 14 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 15 C -0.12 -1.66 5.49 -26.73 -0.15 -1.81 16 16 C -0.11 -1.65 5.92 -26.73 -0.16 -1.81 16 17 C -0.14 -2.37 5.50 -26.73 -0.15 -2.51 16 18 C 0.18 3.46 2.77 -67.96 -0.19 3.28 16 19 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 20 N -0.72 -17.46 5.12 -53.45 -0.27 -17.73 16 21 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 25 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 C -0.13 -1.93 4.86 -26.76 -0.13 -2.06 16 30 H 0.09 0.27 8.14 -51.92 -0.42 -0.15 16 31 H 0.09 0.01 8.14 -51.93 -0.42 -0.42 16 32 H 0.09 0.11 7.19 -51.93 -0.37 -0.26 16 33 H 0.22 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.25 7.21 -51.93 -0.37 -0.12 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.40 2.97 8.60 -40.82 -0.35 2.62 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.38 9.75 7.80 -40.82 -0.32 9.43 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 398.68 15.07 6.01 6.01 Total: -1.00 -38.83 398.68 -9.42 -48.24 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.69 Total: 5.66 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.48 Total: -0.74 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: 0.55 Total: -62.87 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.78 Total: -13.41 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.83 -9.42 -48.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266072119.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.151 kcal (2) G-P(sol) polarization free energy of solvation -38.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds