Wall clock time and date at job start Tue Mar 31 2020 21:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35494 * 126.97636 * 2 1 4 4 N 1.30525 * 107.30495 * 180.22602 * 3 2 1 5 5 N 1.28597 * 109.67170 * 359.77186 * 4 3 2 6 6 C 1.30516 * 109.67461 * 0.02562 * 5 4 3 7 7 C 1.50703 * 126.35032 * 179.97438 * 6 5 4 8 8 O 1.42908 * 109.47226 * 90.01864 * 7 6 5 9 9 C 1.42894 * 114.00013 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47002 * 180.02562 * 9 8 7 11 11 O 1.21287 * 120.00051 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00006 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99811 * 179.97438 * 12 10 9 14 14 H 1.08993 * 109.47068 * 34.99431 * 13 12 10 15 15 C 1.52997 * 109.46949 * 274.99482 * 13 12 10 16 16 C 1.52996 * 109.47131 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46972 * 60.00459 * 16 15 13 18 18 C 1.52997 * 109.46817 * 299.99733 * 17 16 15 19 19 H 1.09001 * 109.47502 * 300.00518 * 18 17 16 20 20 N 1.46500 * 109.47007 * 180.02562 * 18 17 16 21 21 C 1.36936 * 120.00035 * 85.00367 * 20 18 17 22 22 H 1.07997 * 120.00191 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99597 * 180.02562 * 21 20 18 24 24 N 1.31613 * 120.00617 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99539 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47409 * 59.99747 * 25 23 21 27 27 H 1.48499 * 109.46935 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47135 * 299.99727 * 25 23 21 29 29 C 1.52999 * 109.46691 * 155.00013 * 13 12 10 30 30 H 1.09007 * 109.46955 * 270.15346 * 1 2 3 31 31 H 1.08997 * 109.47415 * 30.15798 * 1 2 3 32 32 H 1.09004 * 109.47143 * 150.15956 * 1 2 3 33 33 H 1.07997 * 126.34873 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.46862 * 330.02298 * 7 6 5 35 35 H 1.08993 * 109.47295 * 210.02242 * 7 6 5 36 36 H 1.08997 * 109.47368 * 59.99831 * 9 8 7 37 37 H 1.09002 * 109.46975 * 300.00166 * 9 8 7 38 38 H 0.97000 * 119.99910 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.47289 * 60.00076 * 15 13 12 40 40 H 1.09000 * 109.47611 * 300.00647 * 15 13 12 41 41 H 1.08996 * 109.47452 * 300.00000 * 16 15 13 42 42 H 1.09000 * 109.47054 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.47070 * 179.97438 * 17 16 15 44 44 H 1.08996 * 109.47407 * 59.99513 * 17 16 15 45 45 H 0.97002 * 120.00030 * 265.00025 * 20 18 17 46 46 H 0.96997 * 120.00420 * 180.02562 * 24 23 21 47 47 H 1.08993 * 109.47839 * 59.99891 * 29 13 12 48 48 H 1.09000 * 109.47160 * 299.99453 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5090 0.6431 -0.0049 5 7 3.5091 -0.6429 -0.0031 6 6 2.2801 -1.0823 0.0024 7 6 1.8477 -2.5260 0.0056 8 8 1.7162 -2.9809 1.3540 9 6 1.3085 -4.3456 1.4698 10 6 1.2020 -4.7160 2.9266 11 8 1.4512 -3.8926 3.7815 12 7 0.8308 -5.9628 3.2795 13 6 0.7278 -6.3231 4.6958 14 1 0.3711 -5.4642 5.2642 15 6 2.1037 -6.7435 5.2164 16 6 1.9961 -7.1204 6.6953 17 6 1.0135 -8.2822 6.8553 18 6 -0.3624 -7.8618 6.3347 19 1 -0.7193 -7.0032 6.9034 20 7 -1.3034 -8.9741 6.4884 21 6 -1.9557 -9.1597 7.6781 22 1 -1.7762 -8.4863 8.5031 23 6 -2.8469 -10.2139 7.8238 24 7 -3.0653 -11.0348 6.8185 25 14 -3.7362 -10.4674 9.4469 26 1 -4.5491 -9.2646 9.7591 27 1 -4.6245 -11.6531 9.3446 28 1 -2.7413 -10.6867 10.5275 29 6 -0.2549 -7.4847 4.8563 30 1 -0.3633 0.0028 1.0277 31 1 -0.3634 0.8885 -0.5163 32 1 -0.3634 -0.8914 -0.5114 33 1 1.9701 2.1170 -0.0004 34 1 2.5941 -3.1299 -0.5104 35 1 0.8890 -2.6192 -0.5044 36 1 2.0439 -4.9870 0.9842 37 1 0.3386 -4.4769 0.9900 38 1 0.6318 -6.6214 2.5958 39 1 2.8039 -5.9159 5.1020 40 1 2.4605 -7.6023 4.6480 41 1 1.6392 -6.2618 7.2641 42 1 2.9764 -7.4194 7.0663 43 1 0.9372 -8.5511 7.9089 44 1 1.3703 -9.1408 6.2865 45 1 -1.4644 -9.5791 5.7475 46 1 -3.6884 -11.7713 6.9203 47 1 0.1017 -8.3436 4.2879 48 1 -1.2352 -7.1852 4.4854 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266072119.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:21 Heat of formation + Delta-G solvation = -20.258183 kcal Electronic energy + Delta-G solvation = -28421.247300 eV Core-core repulsion = 24318.896378 eV Total energy + Delta-G solvation = -4102.350922 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.14479 -41.12888 -39.54146 -38.51734 -36.21771 -36.01846 -34.83674 -32.96531 -32.72474 -31.12453 -29.69926 -28.88515 -28.38376 -27.02759 -25.68809 -23.41694 -23.34397 -22.80097 -22.04295 -21.45897 -20.82168 -19.21816 -18.50386 -18.19614 -17.81841 -17.39028 -17.33492 -16.78724 -16.32764 -16.20682 -16.10932 -15.61900 -15.45172 -15.30402 -15.00711 -14.96927 -14.53961 -14.31124 -14.20012 -13.71399 -13.58442 -13.41317 -13.15713 -12.99187 -12.89909 -12.78959 -12.59170 -12.28515 -12.16871 -12.04452 -11.96440 -11.64251 -11.47885 -11.45383 -11.37932 -11.15932 -10.87321 -10.83543 -10.79743 -10.43758 -10.06020 -8.98827 -7.93212 -5.20656 0.62169 1.47861 1.49700 1.51316 1.55786 1.60495 1.68675 1.98017 2.56929 2.89988 3.39704 3.44716 3.63296 3.66906 3.78815 3.85049 3.86816 3.94313 4.04942 4.17604 4.25291 4.27807 4.31435 4.34141 4.39755 4.45597 4.53841 4.58264 4.58629 4.67887 4.69354 4.77229 4.87956 5.02737 5.08801 5.12263 5.17185 5.22307 5.35636 5.47488 5.50797 5.54192 5.65764 5.84272 5.92897 6.29617 6.59889 7.27709 7.36210 7.64061 8.11927 8.36104 9.29686 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023373 B = 0.001743 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.698330 B =16063.685535 C =16533.701207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.466 5.466 3 C 0.167 3.833 4 N -0.352 5.352 5 N -0.326 5.326 6 C 0.164 3.836 7 C 0.150 3.850 8 O -0.395 6.395 9 C 0.049 3.951 10 C 0.507 3.493 11 O -0.578 6.578 12 N -0.707 5.707 13 C 0.160 3.840 14 H 0.064 0.936 15 C -0.117 4.117 16 C -0.108 4.108 17 C -0.126 4.126 18 C 0.176 3.824 19 H 0.033 0.967 20 N -0.734 5.734 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.073 4.073 24 N -0.966 5.966 25 Si 0.967 3.033 26 H -0.280 1.280 27 H -0.295 1.295 28 H -0.281 1.281 29 C -0.113 4.113 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.110 0.890 33 H 0.264 0.736 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.419 0.581 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.039 0.961 44 H 0.056 0.944 45 H 0.375 0.625 46 H 0.251 0.749 47 H 0.079 0.921 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.804 18.891 -20.845 28.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.156 5.156 3 C -0.121 4.121 4 N -0.192 5.192 5 N -0.168 5.168 6 C -0.105 4.105 7 C 0.072 3.928 8 O -0.313 6.313 9 C -0.030 4.030 10 C 0.294 3.706 11 O -0.457 6.457 12 N -0.361 5.361 13 C 0.055 3.945 14 H 0.082 0.918 15 C -0.156 4.156 16 C -0.146 4.146 17 C -0.166 4.166 18 C 0.067 3.933 19 H 0.052 0.948 20 N -0.374 5.374 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.265 4.265 24 N -0.617 5.617 25 Si 0.797 3.203 26 H -0.206 1.206 27 H -0.221 1.221 28 H -0.207 1.207 29 C -0.151 4.151 30 H 0.103 0.897 31 H 0.143 0.857 32 H 0.128 0.872 33 H 0.280 0.720 34 H 0.120 0.880 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.256 0.744 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.207 0.793 46 H 0.059 0.941 47 H 0.098 0.902 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.395 19.620 -19.918 28.920 hybrid contribution -2.029 -0.871 0.622 2.294 sum 5.366 18.749 -19.296 27.434 Atomic orbital electron populations 1.22565 0.72121 1.07752 1.05433 1.46476 1.11045 1.05721 1.52349 1.27325 0.86196 0.96750 1.01879 1.74166 1.20928 1.03247 1.20819 1.74138 1.19413 1.04120 1.19148 1.24807 0.87207 0.93220 1.05280 1.20779 1.03468 0.84437 0.84158 1.88029 1.89939 1.27177 1.26173 1.22413 1.04438 0.83837 0.92285 1.20963 0.75979 0.81810 0.91822 1.90739 1.50238 1.50911 1.53828 1.45821 1.69206 1.12560 1.08491 1.20701 0.95469 0.96706 0.81614 0.91803 1.21812 0.96224 1.01200 0.96320 1.21415 0.99412 0.97763 0.96054 1.22095 0.96191 0.97969 1.00374 1.20301 0.89126 0.89637 0.94250 0.94845 1.42538 1.49308 1.32328 1.13204 1.19535 1.16929 1.08757 0.91874 0.91165 1.25464 1.01858 0.98456 1.00766 1.69779 1.40535 1.19156 1.32241 0.85305 0.78260 0.76854 0.79911 1.20629 1.22091 1.20716 1.21847 0.98795 0.97619 0.96864 0.89677 0.85655 0.87150 0.72047 0.88031 0.86816 0.86449 0.85742 0.74365 0.92539 0.90346 0.92705 0.90786 0.94195 0.92570 0.79307 0.94062 0.90213 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.15 11.04 127.77 1.41 1.56 16 2 N -0.47 -5.98 3.15 -542.06 -1.71 -7.69 16 3 C 0.17 2.46 12.74 180.11 2.30 4.75 16 4 N -0.35 -9.00 12.21 -59.99 -0.73 -9.73 16 5 N -0.33 -8.95 12.21 -50.15 -0.61 -9.56 16 6 C 0.16 3.13 7.66 137.98 1.06 4.19 16 7 C 0.15 1.76 6.29 71.24 0.45 2.21 16 8 O -0.40 -7.54 9.86 -129.94 -1.28 -8.82 16 9 C 0.05 0.59 6.42 71.23 0.46 1.04 16 10 C 0.51 11.28 7.87 87.65 0.69 11.97 16 11 O -0.58 -19.83 16.16 15.99 0.26 -19.57 16 12 N -0.71 -13.32 5.08 -442.52 -2.25 -15.56 16 13 C 0.16 4.11 2.46 44.99 0.11 4.22 16 14 H 0.06 1.99 7.58 -2.39 -0.02 1.97 16 15 C -0.12 -2.93 5.49 30.59 0.17 -2.76 16 16 C -0.11 -2.98 5.92 30.59 0.18 -2.80 16 17 C -0.13 -4.32 5.50 30.59 0.17 -4.15 16 18 C 0.18 6.65 2.77 44.98 0.12 6.77 16 19 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 20 N -0.73 -35.65 5.12 -323.02 -1.65 -37.30 16 21 C -0.24 -13.08 9.93 84.03 0.83 -12.25 16 22 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 23 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 24 N -0.97 -57.71 13.06 21.65 0.28 -57.42 16 25 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 27 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 29 C -0.11 -3.24 4.86 30.58 0.15 -3.09 16 30 H 0.08 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.13 -0.46 8.14 -2.39 -0.02 -0.48 16 32 H 0.11 -0.15 7.19 -2.38 -0.02 -0.17 16 33 H 0.26 0.95 8.06 -2.91 -0.02 0.93 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.11 0.31 7.21 -2.39 -0.02 0.29 16 36 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.13 0.47 8.14 -2.39 -0.02 0.46 16 38 H 0.42 4.76 8.60 -92.71 -0.80 3.96 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.37 19.22 7.80 -92.71 -0.72 18.50 16 46 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 47 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 48 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -89.66 398.68 2.35 -87.30 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -0.54 Total: 22.59 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 8.56 Total: 8.00 kcal Atomic # 7 Polarization: -130.60 SS G_CDS: -6.67 Total: -137.27 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -1.02 Total: -28.39 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -89.66 2.35 -87.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266072119.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.043 kcal (2) G-P(sol) polarization free energy of solvation -89.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds