Wall clock time and date at job start Tue Mar 31 2020 20:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37022 * 125.65190 * 2 1 4 4 C 1.35148 * 107.87580 * 180.14633 * 3 2 1 5 5 C 1.46658 * 126.37960 * 179.84665 * 4 3 2 6 6 O 1.21692 * 120.00232 * 179.68956 * 5 4 3 7 7 N 1.34779 * 119.99664 * 359.69415 * 5 4 3 8 8 C 1.46497 * 119.99868 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.47064 * 179.97438 * 8 7 5 10 10 N 1.46898 * 109.47128 * 179.97438 * 9 8 7 11 11 C 1.46898 * 111.00219 * 169.99790 * 10 9 8 12 12 C 1.53233 * 109.34305 * 172.74287 * 11 10 9 13 13 N 1.47085 * 108.51968 * 53.82976 * 12 11 10 14 14 C 1.36943 * 120.87943 * 128.79060 * 13 12 11 15 15 H 1.07999 * 119.99657 * 206.59025 * 14 13 12 16 16 C 1.38807 * 119.99782 * 26.59509 * 14 13 12 17 17 N 1.31618 * 120.00188 * 17.00985 * 16 14 13 18 18 Si 1.86799 * 119.99686 * 197.00832 * 16 14 13 19 19 H 1.48500 * 109.47237 * 90.00245 * 18 16 14 20 20 H 1.48506 * 109.47030 * 209.99713 * 18 16 14 21 21 H 1.48496 * 109.47404 * 330.00045 * 18 16 14 22 22 C 1.47074 * 118.23733 * 308.81809 * 13 12 11 23 23 C 1.46896 * 111.00297 * 45.69555 * 10 9 8 24 24 N 1.39835 * 107.24363 * 359.58728 * 4 3 2 25 25 C 1.46507 * 126.18402 * 180.26091 * 24 4 3 26 26 C 1.34626 * 125.65228 * 179.67967 * 2 1 3 27 27 O 1.21722 * 125.72463 * 359.97438 * 26 2 1 28 28 H 1.09004 * 109.47280 * 270.32407 * 1 2 3 29 29 H 1.09005 * 109.47334 * 30.31934 * 1 2 3 30 30 H 1.08998 * 109.47091 * 150.32344 * 1 2 3 31 31 H 1.07996 * 126.06149 * 359.97438 * 3 2 1 32 32 H 0.97002 * 119.99728 * 359.97438 * 7 5 4 33 33 H 1.09000 * 109.47402 * 59.99765 * 8 7 5 34 34 H 1.08997 * 109.46802 * 299.99575 * 8 7 5 35 35 H 1.09000 * 109.47106 * 59.99703 * 9 8 7 36 36 H 1.09000 * 109.46810 * 299.99999 * 9 8 7 37 37 H 1.09004 * 109.48987 * 52.78650 * 11 10 9 38 38 H 1.08997 * 109.49438 * 292.71233 * 11 10 9 39 39 H 1.08997 * 109.63057 * 173.53707 * 12 11 10 40 40 H 1.09002 * 109.63037 * 293.92905 * 12 11 10 41 41 H 0.97006 * 119.99914 * 179.97438 * 17 16 14 42 42 H 1.09005 * 109.63035 * 170.89170 * 22 13 12 43 43 H 1.08997 * 109.62936 * 291.46961 * 22 13 12 44 44 H 1.09005 * 109.49472 * 67.29128 * 23 10 9 45 45 H 1.09004 * 109.51569 * 307.23488 * 23 10 9 46 46 H 1.08996 * 109.47173 * 89.99835 * 25 24 4 47 47 H 1.08994 * 109.47525 * 209.99971 * 25 24 4 48 48 H 1.09001 * 109.46937 * 330.00289 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2636 1.1134 0.0000 4 6 3.5505 0.7008 -0.0033 5 6 4.7394 1.5596 -0.0076 6 8 5.8497 1.0617 -0.0046 7 7 4.6020 2.9004 -0.0149 8 6 5.7895 3.7583 -0.0198 9 6 5.3581 5.2262 -0.0283 10 7 6.5488 6.0865 -0.0326 11 6 6.1848 7.4882 -0.2790 12 6 7.4221 8.3735 -0.0965 13 7 8.5000 7.8516 -0.9504 14 6 9.1781 8.6756 -1.8087 15 1 9.6331 8.2699 -2.7002 16 6 9.2806 10.0321 -1.5327 17 7 9.0344 10.4771 -0.3188 18 14 9.7681 11.2258 -2.8842 19 1 8.5488 11.7125 -3.5783 20 1 10.4922 12.3780 -2.2896 21 1 10.6507 10.5363 -3.8592 22 6 8.8298 6.4213 -0.8585 23 6 7.5370 5.6128 -1.0109 24 7 3.5376 -0.6975 0.0043 25 6 4.7120 -1.5733 0.0093 26 6 2.2496 -1.0939 0.0061 27 8 1.8609 -2.2474 0.0130 28 1 -0.3634 0.0058 1.0277 29 1 -0.3634 0.8871 -0.5188 30 1 -0.3633 -0.8929 -0.5088 31 1 1.9247 2.1388 -0.0004 32 1 3.7169 3.2972 -0.0176 33 1 6.3848 3.5497 -0.9088 34 1 6.3850 3.5594 0.8712 35 1 4.7626 5.4351 0.8604 36 1 4.7628 5.4247 -0.9195 37 1 5.4123 7.7928 0.4272 38 1 5.8093 7.5930 -1.2968 39 1 7.1865 9.3968 -0.3887 40 1 7.7359 8.3537 0.9472 41 1 9.1065 11.4251 -0.1259 42 1 9.5249 6.1538 -1.6545 43 1 9.2810 6.2111 0.1112 44 1 7.1428 5.7437 -2.0187 45 1 7.7453 4.5572 -0.8362 46 1 5.0030 -1.7850 1.0382 47 1 4.4714 -2.5067 -0.4995 48 1 5.5355 -1.0799 -0.5069 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266296637.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:21 Heat of formation + Delta-G solvation = 31.571794 kcal Electronic energy + Delta-G solvation = -28966.454988 eV Core-core repulsion = 24866.351583 eV Total energy + Delta-G solvation = -4100.103406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -42.84483 -39.82359 -38.32149 -37.15726 -35.97707 -35.38497 -34.10055 -31.64143 -31.05373 -30.19822 -29.14565 -27.97007 -26.52570 -25.91088 -23.89771 -23.41803 -22.48959 -21.44183 -21.03184 -20.70555 -19.15899 -18.37388 -17.19785 -17.07512 -16.84130 -16.29216 -15.72384 -15.67866 -15.40530 -15.03279 -14.77056 -14.61822 -14.37676 -14.27068 -14.13399 -13.75216 -13.58103 -13.37793 -13.27075 -13.07322 -13.00017 -12.57995 -12.55495 -11.93016 -11.76178 -11.44590 -11.39692 -11.07341 -10.96603 -10.76053 -10.49801 -10.39817 -10.33475 -10.25320 -10.08168 -9.77761 -9.66179 -9.34170 -8.53062 -8.21975 -7.93008 -6.69424 -5.80262 -3.21424 0.90827 1.73326 2.44348 2.45142 2.90587 3.18296 3.36138 3.43279 3.44559 4.13472 4.34200 4.46077 4.48747 4.50635 4.62672 4.75290 4.79384 4.87781 5.03799 5.04777 5.14671 5.36673 5.37778 5.41985 5.42782 5.57219 5.75496 5.81146 5.84864 5.89612 5.93108 6.07534 6.09994 6.17591 6.22487 6.29482 6.49197 6.64785 6.75964 6.90671 7.11578 7.19874 7.48212 7.58202 7.65289 7.77352 7.78877 7.87941 8.41315 9.19255 9.82476 10.40719 11.28623 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029992 B = 0.001844 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.360217 B =15177.341251 C =15646.926875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.524 5.524 3 C 0.053 3.947 4 C -0.032 4.032 5 C 0.591 3.409 6 O -0.531 6.531 7 N -0.715 5.715 8 C 0.117 3.883 9 C 0.044 3.956 10 N -0.527 5.527 11 C 0.037 3.963 12 C 0.177 3.823 13 N -0.596 5.596 14 C -0.251 4.251 15 H 0.066 0.934 16 C 0.000 4.000 17 N -0.903 5.903 18 Si 0.903 3.097 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.148 3.852 23 C 0.034 3.966 24 N -0.510 5.510 25 C 0.099 3.901 26 C 0.648 3.352 27 O -0.565 6.565 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.191 0.809 32 H 0.399 0.601 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.061 0.939 38 H 0.026 0.974 39 H 0.089 0.911 40 H 0.027 0.973 41 H 0.254 0.746 42 H 0.056 0.944 43 H 0.027 0.973 44 H 0.029 0.971 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.087 -17.536 1.549 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.241 5.241 3 C -0.077 4.077 4 C -0.141 4.141 5 C 0.377 3.623 6 O -0.408 6.408 7 N -0.367 5.367 8 C -0.005 4.005 9 C -0.085 4.085 10 N -0.253 5.253 11 C -0.092 4.092 12 C 0.051 3.949 13 N -0.319 5.319 14 C -0.381 4.381 15 H 0.084 0.916 16 C -0.198 4.198 17 N -0.548 5.548 18 Si 0.733 3.267 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.021 3.979 23 C -0.095 4.095 24 N -0.229 5.229 25 C -0.042 4.042 26 C 0.350 3.650 27 O -0.443 6.443 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.208 0.792 32 H 0.234 0.766 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.045 0.955 39 H 0.107 0.893 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.045 0.955 44 H 0.047 0.953 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.100 0.900 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.286 -18.644 2.064 25.508 hybrid contribution -0.688 1.057 -1.383 1.872 sum -17.974 -17.587 0.681 25.156 Atomic orbital electron populations 1.21882 0.74429 1.04765 1.03629 1.44963 1.08044 1.06042 1.65021 1.22056 0.87870 0.93502 1.04265 1.19689 0.93914 0.84276 1.16269 1.16650 0.86835 0.81772 0.77035 1.90844 1.25957 1.74102 1.49900 1.45628 1.10748 1.05049 1.75316 1.21652 0.86478 0.88678 1.03737 1.22261 0.94092 0.91279 1.00896 1.62036 1.09964 1.02732 1.50568 1.22923 1.00576 0.87546 0.98171 1.20864 0.84136 0.96025 0.93863 1.44131 1.37691 1.03313 1.46762 1.19211 1.29661 0.89318 0.99900 0.91590 1.25028 1.00561 0.98253 0.95957 1.70028 1.53437 1.13753 1.17601 0.86276 0.78056 0.80902 0.81460 1.21531 1.21746 1.20466 1.20986 0.92625 0.85445 0.98822 1.22807 0.95107 0.98839 0.92772 1.45208 1.07071 1.04867 1.65765 1.21913 0.85210 0.93484 1.03579 1.16136 0.80824 0.84898 0.83107 1.91045 1.76492 1.16298 1.60433 0.90776 0.89332 0.89278 0.79186 0.76628 0.90467 0.89960 0.90506 0.94817 0.92010 0.95525 0.89270 0.95458 0.93611 0.92549 0.95525 0.95288 0.91212 0.91229 0.89975 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 11.01 59.84 0.66 1.04 16 2 N -0.52 -4.01 3.12 -128.78 -0.40 -4.42 16 3 C 0.05 0.32 10.91 -16.33 -0.18 0.14 16 4 C -0.03 -0.29 6.88 -81.91 -0.56 -0.86 16 5 C 0.59 6.15 7.78 -12.86 -0.10 6.05 16 6 O -0.53 -7.40 14.83 5.20 0.08 -7.32 16 7 N -0.72 -5.85 5.54 -61.63 -0.34 -6.19 16 8 C 0.12 1.26 4.92 -4.04 -0.02 1.24 16 9 C 0.04 0.50 5.38 -3.82 -0.02 0.48 16 10 N -0.53 -8.50 4.78 -234.33 -1.12 -9.62 16 11 C 0.04 0.67 5.58 -3.70 -0.02 0.65 16 12 C 0.18 4.13 5.42 -3.60 -0.02 4.11 16 13 N -0.60 -14.76 3.04 -172.02 -0.52 -15.28 16 14 C -0.25 -6.81 9.63 -15.06 -0.15 -6.96 16 15 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 16 C 0.00 0.01 4.93 -17.43 -0.09 -0.07 16 17 N -0.90 -25.84 11.15 55.49 0.62 -25.22 16 18 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.15 3.07 6.69 -3.61 -0.02 3.05 16 23 C 0.03 0.57 5.04 -3.70 -0.02 0.56 16 24 N -0.51 -5.51 3.21 -124.82 -0.40 -5.91 16 25 C 0.10 0.95 10.58 59.85 0.63 1.59 16 26 C 0.65 7.53 8.49 -87.07 -0.74 6.79 16 27 O -0.57 -8.40 17.59 5.17 0.09 -8.31 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.09 0.43 8.04 -51.93 -0.42 0.01 16 31 H 0.19 0.25 7.37 -52.49 -0.39 -0.14 16 32 H 0.40 1.89 7.32 -40.82 -0.30 1.59 16 33 H 0.08 0.93 6.18 -51.93 -0.32 0.61 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.03 0.37 8.08 -51.93 -0.42 -0.05 16 37 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 2.30 6.12 -51.93 -0.32 1.99 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.06 1.13 7.95 -51.93 -0.41 0.72 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.07 1.02 5.73 -51.93 -0.30 0.73 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 48 H 0.10 1.01 6.45 -51.93 -0.33 0.68 16 LS Contribution 386.32 15.07 5.82 5.82 Total: -1.00 -35.92 386.32 -9.25 -45.17 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -7.40 Total: -2.86 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: -0.64 Total: 17.78 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -2.17 Total: -66.65 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.17 Total: -15.63 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.92 -9.25 -45.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266296637.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.742 kcal (2) G-P(sol) polarization free energy of solvation -35.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds