Wall clock time and date at job start Tue Mar 31 2020 20:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37022 * 125.65190 * 2 1 4 4 C 1.35148 * 107.87580 * 180.14633 * 3 2 1 5 5 C 1.46658 * 126.37960 * 179.84665 * 4 3 2 6 6 O 1.21692 * 120.00232 * 179.68956 * 5 4 3 7 7 N 1.34779 * 119.99664 * 359.69415 * 5 4 3 8 8 C 1.46497 * 119.99868 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.47064 * 179.97438 * 8 7 5 10 10 N 1.46898 * 109.47128 * 179.97438 * 9 8 7 11 11 C 1.46898 * 111.00219 * 169.99790 * 10 9 8 12 12 C 1.53233 * 109.34305 * 172.74287 * 11 10 9 13 13 N 1.47085 * 108.51968 * 53.82976 * 12 11 10 14 14 C 1.36943 * 120.87943 * 128.79060 * 13 12 11 15 15 H 1.07999 * 119.99657 * 206.59025 * 14 13 12 16 16 C 1.38807 * 119.99782 * 26.59509 * 14 13 12 17 17 N 1.31618 * 120.00188 * 17.00985 * 16 14 13 18 18 Si 1.86799 * 119.99686 * 197.00832 * 16 14 13 19 19 H 1.48500 * 109.47237 * 90.00245 * 18 16 14 20 20 H 1.48506 * 109.47030 * 209.99713 * 18 16 14 21 21 H 1.48496 * 109.47404 * 330.00045 * 18 16 14 22 22 C 1.47074 * 118.23733 * 308.81809 * 13 12 11 23 23 C 1.46896 * 111.00297 * 45.69555 * 10 9 8 24 24 N 1.39835 * 107.24363 * 359.58728 * 4 3 2 25 25 C 1.46507 * 126.18402 * 180.26091 * 24 4 3 26 26 C 1.34626 * 125.65228 * 179.67967 * 2 1 3 27 27 O 1.21722 * 125.72463 * 359.97438 * 26 2 1 28 28 H 1.09004 * 109.47280 * 270.32407 * 1 2 3 29 29 H 1.09005 * 109.47334 * 30.31934 * 1 2 3 30 30 H 1.08998 * 109.47091 * 150.32344 * 1 2 3 31 31 H 1.07996 * 126.06149 * 359.97438 * 3 2 1 32 32 H 0.97002 * 119.99728 * 359.97438 * 7 5 4 33 33 H 1.09000 * 109.47402 * 59.99765 * 8 7 5 34 34 H 1.08997 * 109.46802 * 299.99575 * 8 7 5 35 35 H 1.09000 * 109.47106 * 59.99703 * 9 8 7 36 36 H 1.09000 * 109.46810 * 299.99999 * 9 8 7 37 37 H 1.09004 * 109.48987 * 52.78650 * 11 10 9 38 38 H 1.08997 * 109.49438 * 292.71233 * 11 10 9 39 39 H 1.08997 * 109.63057 * 173.53707 * 12 11 10 40 40 H 1.09002 * 109.63037 * 293.92905 * 12 11 10 41 41 H 0.97006 * 119.99914 * 179.97438 * 17 16 14 42 42 H 1.09005 * 109.63035 * 170.89170 * 22 13 12 43 43 H 1.08997 * 109.62936 * 291.46961 * 22 13 12 44 44 H 1.09005 * 109.49472 * 67.29128 * 23 10 9 45 45 H 1.09004 * 109.51569 * 307.23488 * 23 10 9 46 46 H 1.08996 * 109.47173 * 89.99835 * 25 24 4 47 47 H 1.08994 * 109.47525 * 209.99971 * 25 24 4 48 48 H 1.09001 * 109.46937 * 330.00289 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2636 1.1134 0.0000 4 6 3.5505 0.7008 -0.0033 5 6 4.7394 1.5596 -0.0076 6 8 5.8497 1.0617 -0.0046 7 7 4.6020 2.9004 -0.0149 8 6 5.7895 3.7583 -0.0198 9 6 5.3581 5.2262 -0.0283 10 7 6.5488 6.0865 -0.0326 11 6 6.1848 7.4882 -0.2790 12 6 7.4221 8.3735 -0.0965 13 7 8.5000 7.8516 -0.9504 14 6 9.1781 8.6756 -1.8087 15 1 9.6331 8.2699 -2.7002 16 6 9.2806 10.0321 -1.5327 17 7 9.0344 10.4771 -0.3188 18 14 9.7681 11.2258 -2.8842 19 1 8.5488 11.7125 -3.5783 20 1 10.4922 12.3780 -2.2896 21 1 10.6507 10.5363 -3.8592 22 6 8.8298 6.4213 -0.8585 23 6 7.5370 5.6128 -1.0109 24 7 3.5376 -0.6975 0.0043 25 6 4.7120 -1.5733 0.0093 26 6 2.2496 -1.0939 0.0061 27 8 1.8609 -2.2474 0.0130 28 1 -0.3634 0.0058 1.0277 29 1 -0.3634 0.8871 -0.5188 30 1 -0.3633 -0.8929 -0.5088 31 1 1.9247 2.1388 -0.0004 32 1 3.7169 3.2972 -0.0176 33 1 6.3848 3.5497 -0.9088 34 1 6.3850 3.5594 0.8712 35 1 4.7626 5.4351 0.8604 36 1 4.7628 5.4247 -0.9195 37 1 5.4123 7.7928 0.4272 38 1 5.8093 7.5930 -1.2968 39 1 7.1865 9.3968 -0.3887 40 1 7.7359 8.3537 0.9472 41 1 9.1065 11.4251 -0.1259 42 1 9.5249 6.1538 -1.6545 43 1 9.2810 6.2111 0.1112 44 1 7.1428 5.7437 -2.0187 45 1 7.7453 4.5572 -0.8362 46 1 5.0030 -1.7850 1.0382 47 1 4.4714 -2.5067 -0.4995 48 1 5.5355 -1.0799 -0.5069 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266296637.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:19 Heat of formation + Delta-G solvation = 4.145170 kcal Electronic energy + Delta-G solvation = -28967.644296 eV Core-core repulsion = 24866.351583 eV Total energy + Delta-G solvation = -4101.292713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.53577 -40.66737 -39.67881 -38.03096 -36.97334 -36.34310 -35.40031 -33.30391 -32.08189 -31.52873 -30.20486 -28.95583 -27.48676 -27.01186 -25.26781 -24.42849 -23.98516 -22.57184 -21.81953 -21.47929 -20.75861 -19.09662 -18.70951 -17.90392 -17.72343 -17.26915 -16.86872 -16.58951 -16.39501 -16.24208 -15.84195 -15.68285 -15.45735 -15.31404 -15.12953 -15.01976 -14.93166 -14.70526 -14.45945 -14.04740 -13.93959 -13.43464 -13.24450 -13.13408 -12.98736 -12.92152 -12.61938 -12.57645 -12.34800 -12.26608 -11.99620 -11.87254 -11.85247 -11.46056 -11.40922 -11.14910 -10.95510 -10.56862 -10.16197 -9.22497 -8.91576 -8.65754 -7.86013 -5.30468 0.30597 1.08960 1.48301 1.48878 1.58201 1.64027 1.76562 2.17990 2.51232 2.53745 3.13533 3.29272 3.58144 3.71148 3.83407 3.95102 4.01859 4.14858 4.17502 4.31603 4.34080 4.38845 4.39403 4.51699 4.52588 4.61810 4.67779 4.69191 4.75265 4.81660 4.89968 4.93507 4.97958 5.01824 5.09934 5.22182 5.23429 5.32869 5.41068 5.60442 5.63184 5.73750 6.09919 6.17826 6.28705 6.39557 6.50908 7.02205 7.15679 7.16109 7.86360 8.39870 9.20512 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.029992 B = 0.001844 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.360217 B =15177.341251 C =15646.926875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.517 5.517 3 C 0.100 3.900 4 C -0.073 4.073 5 C 0.595 3.405 6 O -0.576 6.576 7 N -0.696 5.696 8 C 0.128 3.872 9 C 0.051 3.949 10 N -0.541 5.541 11 C 0.055 3.945 12 C 0.181 3.819 13 N -0.615 5.615 14 C -0.263 4.263 15 H 0.066 0.934 16 C -0.052 4.052 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.283 1.283 20 H -0.296 1.296 21 H -0.271 1.271 22 C 0.141 3.859 23 C 0.049 3.951 24 N -0.519 5.519 25 C 0.100 3.900 26 C 0.629 3.371 27 O -0.611 6.611 28 H 0.087 0.913 29 H 0.129 0.871 30 H 0.075 0.925 31 H 0.248 0.752 32 H 0.420 0.580 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.052 0.948 37 H 0.089 0.911 38 H 0.025 0.975 39 H 0.057 0.943 40 H -0.002 1.002 41 H 0.250 0.750 42 H 0.056 0.944 43 H 0.014 0.986 44 H 0.027 0.973 45 H 0.094 0.906 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.903 -17.079 0.946 27.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.232 5.232 3 C -0.031 4.031 4 C -0.181 4.181 5 C 0.382 3.618 6 O -0.457 6.457 7 N -0.349 5.349 8 C 0.004 3.996 9 C -0.077 4.077 10 N -0.267 5.267 11 C -0.075 4.075 12 C 0.056 3.944 13 N -0.339 5.339 14 C -0.393 4.393 15 H 0.084 0.916 16 C -0.247 4.247 17 N -0.581 5.581 18 Si 0.796 3.204 19 H -0.210 1.210 20 H -0.222 1.222 21 H -0.196 1.196 22 C 0.015 3.985 23 C -0.080 4.080 24 N -0.238 5.238 25 C -0.041 4.041 26 C 0.331 3.669 27 O -0.492 6.492 28 H 0.105 0.895 29 H 0.147 0.853 30 H 0.094 0.906 31 H 0.264 0.736 32 H 0.258 0.742 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.016 0.984 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.032 0.968 44 H 0.045 0.955 45 H 0.112 0.888 46 H 0.089 0.911 47 H 0.100 0.900 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.163 -18.168 1.456 27.180 hybrid contribution 0.150 0.878 -1.146 1.452 sum -20.013 -17.290 0.310 26.449 Atomic orbital electron populations 1.22247 0.72050 1.06146 1.04991 1.45231 1.09388 1.05397 1.63173 1.22928 0.86179 0.94931 0.99052 1.19638 0.94788 0.83330 1.20304 1.16794 0.86583 0.82263 0.76174 1.90827 1.27715 1.74949 1.52167 1.45302 1.11108 1.04035 1.74463 1.21356 0.87156 0.88681 1.02439 1.22275 0.92242 0.90240 1.02896 1.61907 1.12121 1.02412 1.50236 1.22565 0.98089 0.87947 0.98853 1.20667 0.86108 0.95919 0.91751 1.44427 1.38227 1.04619 1.46625 1.19526 1.29402 0.90063 1.00281 0.91647 1.25781 1.01259 0.99776 0.97911 1.70187 1.54912 1.13647 1.19361 0.85254 0.77768 0.78442 0.78893 1.20991 1.22237 1.19573 1.21142 0.95106 0.84097 0.98110 1.22572 0.93318 0.99175 0.92949 1.45299 1.06976 1.05977 1.65563 1.21855 0.85109 0.93524 1.03589 1.16426 0.81381 0.85297 0.83786 1.90993 1.77320 1.18288 1.62615 0.89481 0.85288 0.90585 0.73603 0.74158 0.91785 0.91489 0.88089 0.92976 0.89238 0.95707 0.92421 0.98411 0.94059 0.92531 0.96794 0.95489 0.88795 0.91072 0.89960 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 11.01 127.77 1.41 1.78 16 2 N -0.52 -6.34 3.12 -679.65 -2.12 -8.47 16 3 C 0.10 0.73 10.91 83.17 0.91 1.63 16 4 C -0.07 -1.15 6.88 39.35 0.27 -0.88 16 5 C 0.59 11.16 7.78 86.44 0.67 11.83 16 6 O -0.58 -15.87 14.83 -4.32 -0.06 -15.94 16 7 N -0.70 -8.79 5.54 -467.10 -2.59 -11.38 16 8 C 0.13 2.35 4.92 86.38 0.43 2.78 16 9 C 0.05 0.95 5.38 86.30 0.46 1.42 16 10 N -0.54 -16.11 4.78 -895.27 -4.28 -20.39 16 11 C 0.05 1.87 5.58 86.38 0.48 2.35 16 12 C 0.18 8.57 5.42 86.35 0.47 9.04 16 13 N -0.61 -30.89 3.04 -698.15 -2.12 -33.01 16 14 C -0.26 -14.42 9.63 84.03 0.81 -13.61 16 15 H 0.07 3.51 7.88 -2.91 -0.02 3.49 16 16 C -0.05 -2.88 4.93 84.86 0.42 -2.47 16 17 N -0.93 -54.88 11.15 21.65 0.24 -54.64 16 18 Si 0.97 44.43 29.59 68.60 2.03 46.46 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 C 0.14 5.88 6.69 86.35 0.58 6.46 16 23 C 0.05 1.57 5.04 86.38 0.44 2.01 16 24 N -0.52 -10.98 3.21 -667.04 -2.14 -13.13 16 25 C 0.10 2.03 10.58 127.77 1.35 3.38 16 26 C 0.63 14.17 8.49 179.11 1.52 15.69 16 27 O -0.61 -18.53 17.59 -4.42 -0.08 -18.61 16 28 H 0.09 0.21 8.14 -2.38 -0.02 0.20 16 29 H 0.13 -0.44 8.14 -2.38 -0.02 -0.46 16 30 H 0.08 0.59 8.04 -2.39 -0.02 0.57 16 31 H 0.25 -1.22 7.37 -2.91 -0.02 -1.24 16 32 H 0.42 1.62 7.32 -92.71 -0.68 0.94 16 33 H 0.06 1.39 6.18 -2.39 -0.01 1.37 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.05 0.85 8.08 -2.39 -0.02 0.83 16 37 H 0.09 2.57 8.11 -2.38 -0.02 2.55 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.06 3.06 6.12 -2.39 -0.01 3.05 16 40 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.25 14.20 8.31 -92.70 -0.77 13.42 16 42 H 0.06 2.29 7.95 -2.38 -0.02 2.27 16 43 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 44 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 45 H 0.09 2.58 5.73 -2.38 -0.01 2.56 16 46 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 48 H 0.09 2.01 6.45 -2.39 -0.02 1.99 16 Total: -1.00 -83.68 386.32 -0.61 -84.29 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 0.30 Total: 3.38 kcal Atomic # 6 Polarization: 31.19 SS G_CDS: 10.21 Total: 41.41 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -13.01 Total: -141.00 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -0.14 Total: -34.54 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -83.68 -0.61 -84.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266296637.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.440 kcal (2) G-P(sol) polarization free energy of solvation -83.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds