Wall clock time and date at job start Tue Mar 31 2020 20:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46907 * 109.47161 * 2 1 4 4 C 1.46898 * 110.99681 * 64.47711 * 3 2 1 5 5 C 1.52998 * 109.47322 * 66.04394 * 4 3 2 6 6 N 1.46505 * 109.47365 * 179.97438 * 5 4 3 7 7 C 1.34770 * 120.00436 * 180.27605 * 6 5 4 8 8 O 1.21680 * 119.99804 * 354.50402 * 7 6 5 9 9 C 1.46757 * 120.00356 * 174.50262 * 7 6 5 10 10 C 1.36661 * 126.84906 * 99.32261 * 9 7 6 11 11 C 1.50702 * 126.10262 * 359.97438 * 10 9 7 12 12 N 1.33319 * 107.78947 * 179.89794 * 10 9 7 13 13 C 1.30856 * 109.68540 * 0.37911 * 12 10 9 14 14 N 1.34493 * 109.16075 * 359.76089 * 13 12 10 15 15 C 1.46500 * 126.46984 * 180.02562 * 14 13 12 16 16 C 1.46890 * 110.99971 * 300.52176 * 3 2 1 17 17 C 1.50706 * 109.47246 * 287.65939 * 16 3 2 18 18 O 1.21285 * 119.99894 * 0.46032 * 17 16 3 19 19 N 1.34780 * 119.99912 * 180.45429 * 17 16 3 20 20 C 1.37092 * 119.99602 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00653 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99882 * 179.97438 * 20 19 17 23 23 N 1.31417 * 120.00048 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00419 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47069 * 89.99968 * 24 22 20 26 26 H 1.48492 * 109.47420 * 210.00421 * 24 22 20 27 27 H 1.48509 * 109.46671 * 330.00169 * 24 22 20 28 28 H 1.08996 * 109.46946 * 55.87355 * 1 2 3 29 29 H 1.08995 * 109.47172 * 175.87240 * 1 2 3 30 30 H 1.08997 * 109.46710 * 295.87497 * 1 2 3 31 31 H 1.09005 * 109.47338 * 240.00320 * 2 1 3 32 32 H 1.09000 * 109.47400 * 120.00121 * 2 1 3 33 33 H 1.09006 * 109.47023 * 306.04282 * 4 3 2 34 34 H 1.08999 * 109.47089 * 186.04433 * 4 3 2 35 35 H 1.08999 * 109.46867 * 60.00149 * 5 4 3 36 36 H 1.08996 * 109.47424 * 299.99671 * 5 4 3 37 37 H 0.97001 * 119.99473 * 359.97438 * 6 5 4 38 38 H 1.09000 * 109.47100 * 90.00061 * 11 10 9 39 39 H 1.08999 * 109.47388 * 210.00260 * 11 10 9 40 40 H 1.09003 * 109.47579 * 330.00405 * 11 10 9 41 41 H 1.07995 * 125.41869 * 179.78339 * 13 12 10 42 42 H 1.09009 * 109.47504 * 274.92963 * 15 14 13 43 43 H 1.09003 * 109.47240 * 34.92750 * 15 14 13 44 44 H 1.09003 * 109.47388 * 154.93045 * 15 14 13 45 45 H 1.09000 * 109.47509 * 47.66186 * 16 3 2 46 46 H 1.08998 * 109.47372 * 167.65911 * 16 3 2 47 47 H 0.97001 * 119.99991 * 359.97438 * 19 17 16 48 48 H 0.97003 * 120.00042 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6381 2.0783 1.2376 5 6 2.3595 1.4371 2.4247 6 7 1.9794 2.1288 3.6589 7 6 2.4996 1.7369 4.8388 8 8 3.2059 0.7476 4.8937 9 6 2.2144 2.5034 6.0574 10 6 1.2834 2.2071 7.0128 11 6 0.3520 1.0223 7.0080 12 7 1.3472 3.1523 7.9508 13 6 2.2633 4.0301 7.6304 14 7 2.8295 3.6716 6.4643 15 6 3.8972 4.3849 5.7590 16 6 1.5386 2.1135 -1.1813 17 6 2.2655 1.6206 -2.4060 18 8 3.0961 0.7425 -2.3058 19 7 1.9925 2.1556 -3.6126 20 6 2.6534 1.7068 -4.7267 21 1 3.3926 0.9244 -4.6377 22 6 2.3716 2.2579 -5.9707 23 7 1.4719 3.2096 -6.0792 24 14 3.2727 1.6470 -7.4888 25 1 2.5170 0.5205 -8.0931 26 1 3.3871 2.7517 -8.4745 27 1 4.6303 1.1832 -7.1053 28 1 -0.3633 0.5765 -0.8507 29 1 -0.3633 -1.0249 -0.0740 30 1 -0.3632 0.4485 0.9246 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5604 1.9986 1.3812 34 1 1.9184 3.1292 1.1666 35 1 3.4371 1.5168 2.2811 36 1 2.0792 0.3862 2.4957 37 1 1.3566 2.8717 3.6263 38 1 0.8275 0.1843 7.5176 39 1 -0.5719 1.2842 7.5236 40 1 0.1268 0.7413 5.9791 41 1 2.5235 4.9032 8.2102 42 1 3.4625 5.1695 5.1395 43 1 4.5776 4.8303 6.4849 44 1 4.4459 3.6859 5.1279 45 1 0.4685 1.9446 -1.3015 46 1 1.7258 3.1795 -1.0521 47 1 1.3279 2.8575 -3.6928 48 1 1.2755 3.5946 -6.9476 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266397037.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:25 Heat of formation + Delta-G solvation = 1.474019 kcal Electronic energy + Delta-G solvation = -28783.720362 eV Core-core repulsion = 24682.311819 eV Total energy + Delta-G solvation = -4101.408543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.57579 -39.71677 -38.86214 -37.12501 -34.97327 -34.82298 -33.84860 -31.81338 -31.26748 -30.46943 -29.64883 -28.57923 -26.64113 -26.10322 -24.34208 -24.03013 -22.65689 -21.08380 -20.64937 -19.98757 -18.97406 -18.02944 -17.81726 -16.84225 -16.33348 -16.25765 -16.10297 -15.78214 -15.58646 -15.08886 -14.62617 -14.51757 -14.26834 -13.93911 -13.90453 -13.50865 -13.39530 -13.26722 -13.12994 -13.04345 -12.92947 -12.68862 -12.48434 -12.17383 -11.92443 -11.74039 -11.53254 -11.43766 -11.14715 -10.99598 -10.81133 -10.47144 -10.39673 -10.23481 -10.20612 -10.00557 -9.49225 -9.35788 -8.77342 -8.52082 -7.98341 -7.88756 -6.42722 -3.83346 1.30050 1.83370 2.47994 2.61940 2.90074 3.16811 3.25578 3.31549 3.89444 3.97912 4.11782 4.20746 4.23955 4.34074 4.60137 4.64831 4.77382 4.86436 4.91018 4.93553 5.05016 5.21209 5.29373 5.33701 5.39142 5.41390 5.49088 5.58172 5.61235 5.62967 5.74562 5.75201 5.80306 5.83825 5.97714 6.10334 6.21318 6.25104 6.29370 6.52098 6.65659 7.06548 7.18666 7.28150 7.54358 7.58753 7.79329 8.05553 8.61213 9.17714 9.53819 10.05962 10.75063 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023532 B = 0.001896 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.583070 B =14762.369635 C =15219.475855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.045 3.955 3 N -0.507 5.507 4 C 0.041 3.959 5 C 0.120 3.880 6 N -0.717 5.717 7 C 0.597 3.403 8 O -0.517 6.517 9 C -0.082 4.082 10 C 0.061 3.939 11 C -0.073 4.073 12 N -0.493 5.493 13 C 0.202 3.798 14 N -0.439 5.439 15 C 0.067 3.933 16 C 0.041 3.959 17 C 0.446 3.554 18 O -0.575 6.575 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.401 0.599 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.212 0.788 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.086 0.914 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.143 5.086 23.778 24.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.083 4.083 3 N -0.230 5.230 4 C -0.088 4.088 5 C -0.003 4.003 6 N -0.369 5.369 7 C 0.380 3.620 8 O -0.391 6.391 9 C -0.198 4.198 10 C -0.072 4.072 11 C -0.131 4.131 12 N -0.211 5.211 13 C -0.080 4.080 14 N -0.122 5.122 15 C -0.076 4.076 16 C -0.091 4.091 17 C 0.231 3.769 18 O -0.459 6.459 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.236 0.764 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.228 0.772 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.104 0.896 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.909 3.966 24.253 24.649 hybrid contribution -0.631 0.866 -1.561 1.893 sum -2.540 4.832 22.692 23.340 Atomic orbital electron populations 1.22457 0.98914 1.02474 1.01457 1.22331 0.92014 0.89757 1.04196 1.61682 1.59442 1.02188 0.99722 1.22256 0.97781 0.98707 0.90075 1.21437 1.00850 0.96803 0.81181 1.45972 1.47724 1.36673 1.06540 1.16824 0.79767 0.83950 0.81470 1.90885 1.36986 1.25684 1.85524 1.20705 1.04526 0.93433 1.01139 1.20881 0.97743 0.97757 0.90802 1.20142 0.97278 0.92998 1.02702 1.70031 1.19657 1.03990 1.27457 1.25021 0.94288 1.01300 0.87382 1.45321 1.29133 1.18550 1.19225 1.22208 0.89095 0.97860 0.98390 1.21956 0.97979 0.98436 0.90690 1.19711 0.86907 0.86386 0.83932 1.90509 1.36468 1.33332 1.85571 1.41858 1.37434 1.35462 1.05579 1.19687 1.19435 1.19208 0.84333 0.87932 1.25252 0.97158 0.96354 0.99254 1.69612 1.32786 1.26285 1.25783 0.85868 0.79807 0.78094 0.80587 1.20451 1.20964 1.19416 0.92047 0.92042 0.93114 0.88340 0.90978 0.93947 0.90392 0.90073 0.90667 0.76434 0.90577 0.90456 0.91283 0.77153 0.89649 0.88746 0.89328 0.92460 0.89598 0.77580 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 9.28 37.16 0.34 -2.09 16 2 C 0.04 0.67 5.59 -3.82 -0.02 0.64 16 3 N -0.51 -7.69 4.34 -236.07 -1.02 -8.72 16 4 C 0.04 0.44 4.89 -3.83 -0.02 0.42 16 5 C 0.12 1.32 5.61 -4.04 -0.02 1.30 16 6 N -0.72 -6.61 5.55 -61.60 -0.34 -6.95 16 7 C 0.60 6.92 6.73 -12.82 -0.09 6.83 16 8 O -0.52 -8.07 17.12 5.21 0.09 -7.98 16 9 C -0.08 -0.86 6.66 -82.14 -0.55 -1.41 16 10 C 0.06 0.67 7.15 -82.52 -0.59 0.08 16 11 C -0.07 -0.66 10.24 36.01 0.37 -0.29 16 12 N -0.49 -5.34 11.20 -10.65 -0.12 -5.46 16 13 C 0.20 1.56 12.52 -90.58 -1.13 0.42 16 14 N -0.44 -3.47 3.17 -121.97 -0.39 -3.85 16 15 C 0.07 0.30 11.07 59.85 0.66 0.96 16 16 C 0.04 0.67 5.30 -4.98 -0.03 0.65 16 17 C 0.45 10.15 7.54 -10.98 -0.08 10.07 16 18 O -0.58 -15.16 14.39 5.55 0.08 -15.08 16 19 N -0.57 -13.98 5.29 -10.96 -0.06 -14.04 16 20 C -0.30 -8.15 9.68 -14.94 -0.14 -8.29 16 21 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 24 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H 0.06 0.83 5.94 -51.93 -0.31 0.52 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.55 6.59 -51.93 -0.34 0.20 16 31 H 0.10 1.83 6.44 -51.93 -0.33 1.49 16 32 H 0.07 0.98 6.28 -51.93 -0.33 0.65 16 33 H 0.04 0.41 6.24 -51.93 -0.32 0.09 16 34 H 0.08 0.76 7.86 -51.93 -0.41 0.36 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 0.91 6.46 -51.93 -0.34 0.57 16 37 H 0.40 2.77 8.46 -40.82 -0.35 2.42 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.58 7.94 -51.93 -0.41 0.17 16 41 H 0.21 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.08 0.25 8.14 -51.92 -0.42 -0.17 16 43 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.09 0.52 7.79 -51.93 -0.40 0.11 16 45 H 0.06 0.87 5.64 -51.93 -0.29 0.58 16 46 H 0.09 1.27 7.80 -51.93 -0.41 0.87 16 47 H 0.39 9.22 7.90 -40.82 -0.32 8.89 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 396.46 15.07 5.97 5.97 Total: -1.00 -35.48 396.46 -8.51 -43.99 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -7.03 Total: 9.99 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -1.39 Total: 9.76 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -1.21 Total: -62.52 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.17 Total: -23.05 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.48 -8.51 -43.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266397037.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.468 kcal (2) G-P(sol) polarization free energy of solvation -35.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds