Wall clock time and date at job start Tue Mar 31 2020 20:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46907 * 109.47161 * 2 1 4 4 C 1.46898 * 110.99681 * 64.47711 * 3 2 1 5 5 C 1.52998 * 109.47322 * 66.04394 * 4 3 2 6 6 N 1.46505 * 109.47365 * 179.97438 * 5 4 3 7 7 C 1.34770 * 120.00436 * 180.27605 * 6 5 4 8 8 O 1.21680 * 119.99804 * 354.50402 * 7 6 5 9 9 C 1.46757 * 120.00356 * 174.50262 * 7 6 5 10 10 C 1.36661 * 126.84906 * 99.32261 * 9 7 6 11 11 C 1.50702 * 126.10262 * 359.97438 * 10 9 7 12 12 N 1.33319 * 107.78947 * 179.89794 * 10 9 7 13 13 C 1.30856 * 109.68540 * 0.37911 * 12 10 9 14 14 N 1.34493 * 109.16075 * 359.76089 * 13 12 10 15 15 C 1.46500 * 126.46984 * 180.02562 * 14 13 12 16 16 C 1.46890 * 110.99971 * 300.52176 * 3 2 1 17 17 C 1.50706 * 109.47246 * 287.65939 * 16 3 2 18 18 O 1.21285 * 119.99894 * 0.46032 * 17 16 3 19 19 N 1.34780 * 119.99912 * 180.45429 * 17 16 3 20 20 C 1.37092 * 119.99602 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00653 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99882 * 179.97438 * 20 19 17 23 23 N 1.31417 * 120.00048 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00419 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47069 * 89.99968 * 24 22 20 26 26 H 1.48492 * 109.47420 * 210.00421 * 24 22 20 27 27 H 1.48509 * 109.46671 * 330.00169 * 24 22 20 28 28 H 1.08996 * 109.46946 * 55.87355 * 1 2 3 29 29 H 1.08995 * 109.47172 * 175.87240 * 1 2 3 30 30 H 1.08997 * 109.46710 * 295.87497 * 1 2 3 31 31 H 1.09005 * 109.47338 * 240.00320 * 2 1 3 32 32 H 1.09000 * 109.47400 * 120.00121 * 2 1 3 33 33 H 1.09006 * 109.47023 * 306.04282 * 4 3 2 34 34 H 1.08999 * 109.47089 * 186.04433 * 4 3 2 35 35 H 1.08999 * 109.46867 * 60.00149 * 5 4 3 36 36 H 1.08996 * 109.47424 * 299.99671 * 5 4 3 37 37 H 0.97001 * 119.99473 * 359.97438 * 6 5 4 38 38 H 1.09000 * 109.47100 * 90.00061 * 11 10 9 39 39 H 1.08999 * 109.47388 * 210.00260 * 11 10 9 40 40 H 1.09003 * 109.47579 * 330.00405 * 11 10 9 41 41 H 1.07995 * 125.41869 * 179.78339 * 13 12 10 42 42 H 1.09009 * 109.47504 * 274.92963 * 15 14 13 43 43 H 1.09003 * 109.47240 * 34.92750 * 15 14 13 44 44 H 1.09003 * 109.47388 * 154.93045 * 15 14 13 45 45 H 1.09000 * 109.47509 * 47.66186 * 16 3 2 46 46 H 1.08998 * 109.47372 * 167.65911 * 16 3 2 47 47 H 0.97001 * 119.99991 * 359.97438 * 19 17 16 48 48 H 0.97003 * 120.00042 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6381 2.0783 1.2376 5 6 2.3595 1.4371 2.4247 6 7 1.9794 2.1288 3.6589 7 6 2.4996 1.7369 4.8388 8 8 3.2059 0.7476 4.8937 9 6 2.2144 2.5034 6.0574 10 6 1.2834 2.2071 7.0128 11 6 0.3520 1.0223 7.0080 12 7 1.3472 3.1523 7.9508 13 6 2.2633 4.0301 7.6304 14 7 2.8295 3.6716 6.4643 15 6 3.8972 4.3849 5.7590 16 6 1.5386 2.1135 -1.1813 17 6 2.2655 1.6206 -2.4060 18 8 3.0961 0.7425 -2.3058 19 7 1.9925 2.1556 -3.6126 20 6 2.6534 1.7068 -4.7267 21 1 3.3926 0.9244 -4.6377 22 6 2.3716 2.2579 -5.9707 23 7 1.4719 3.2096 -6.0792 24 14 3.2727 1.6470 -7.4888 25 1 2.5170 0.5205 -8.0931 26 1 3.3871 2.7517 -8.4745 27 1 4.6303 1.1832 -7.1053 28 1 -0.3633 0.5765 -0.8507 29 1 -0.3633 -1.0249 -0.0740 30 1 -0.3632 0.4485 0.9246 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5604 1.9986 1.3812 34 1 1.9184 3.1292 1.1666 35 1 3.4371 1.5168 2.2811 36 1 2.0792 0.3862 2.4957 37 1 1.3566 2.8717 3.6263 38 1 0.8275 0.1843 7.5176 39 1 -0.5719 1.2842 7.5236 40 1 0.1268 0.7413 5.9791 41 1 2.5235 4.9032 8.2102 42 1 3.4625 5.1695 5.1395 43 1 4.5776 4.8303 6.4849 44 1 4.4459 3.6859 5.1279 45 1 0.4685 1.9446 -1.3015 46 1 1.7258 3.1795 -1.0521 47 1 1.3279 2.8575 -3.6928 48 1 1.2755 3.5946 -6.9476 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266397037.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:24 Heat of formation + Delta-G solvation = -25.495189 kcal Electronic energy + Delta-G solvation = -28784.889835 eV Core-core repulsion = 24682.311819 eV Total energy + Delta-G solvation = -4102.578016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.23218 -40.75483 -40.29767 -38.58191 -36.05802 -35.71142 -35.43642 -33.25081 -32.55942 -31.49184 -30.77292 -29.28928 -27.77180 -26.98316 -25.99760 -24.98626 -23.54685 -21.83730 -21.69860 -20.99544 -20.53983 -19.74718 -18.75201 -17.76775 -17.63442 -17.25843 -17.02183 -16.73733 -16.54789 -16.47235 -16.06523 -15.79035 -15.34527 -15.16747 -14.95823 -14.54272 -14.47312 -14.44819 -14.04367 -13.96211 -13.64010 -13.56360 -13.41347 -13.24335 -13.12655 -13.02549 -12.99123 -12.74999 -12.57348 -12.39802 -12.17946 -12.08966 -11.71845 -11.65415 -11.39476 -11.00328 -10.62836 -10.29505 -10.26441 -9.97138 -9.47437 -9.14885 -8.44503 -5.92324 0.61601 1.08306 1.38296 1.41992 1.54187 1.70079 1.95451 2.10514 2.13032 2.31297 2.88730 3.22551 3.45184 3.52562 3.65372 3.79919 3.84076 4.00102 4.11938 4.16903 4.27216 4.29234 4.30686 4.34861 4.40789 4.50283 4.59103 4.60090 4.62759 4.72322 4.80149 4.84691 4.85195 4.95998 4.98596 5.12926 5.15882 5.21158 5.35823 5.43290 5.51528 5.88979 6.08874 6.12345 6.19148 6.30471 6.64434 6.92179 6.96754 7.16687 7.61080 8.17896 8.72793 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023532 B = 0.001896 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.583070 B =14762.369635 C =15219.475855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 N -0.530 5.530 4 C 0.049 3.951 5 C 0.130 3.870 6 N -0.697 5.697 7 C 0.604 3.396 8 O -0.565 6.565 9 C -0.102 4.102 10 C 0.045 3.955 11 C -0.073 4.073 12 N -0.528 5.528 13 C 0.216 3.784 14 N -0.437 5.437 15 C 0.061 3.939 16 C 0.055 3.945 17 C 0.443 3.557 18 O -0.616 6.616 19 N -0.577 5.577 20 C -0.329 4.329 21 H 0.076 0.924 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.275 1.275 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.417 0.583 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.254 0.746 42 H 0.106 0.894 43 H 0.122 0.878 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.112 0.888 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.038 7.222 24.774 26.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.081 4.081 3 N -0.254 5.254 4 C -0.079 4.079 5 C 0.006 3.994 6 N -0.349 5.349 7 C 0.388 3.612 8 O -0.443 6.443 9 C -0.219 4.219 10 C -0.088 4.088 11 C -0.131 4.131 12 N -0.248 5.248 13 C -0.066 4.066 14 N -0.120 5.120 15 C -0.079 4.079 16 C -0.076 4.076 17 C 0.230 3.770 18 O -0.502 6.502 19 N -0.215 5.215 20 C -0.459 4.459 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.814 3.186 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.200 1.200 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.254 0.746 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.270 0.730 42 H 0.124 0.876 43 H 0.141 0.859 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.130 0.870 47 H 0.230 0.770 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.839 6.155 25.245 26.140 hybrid contribution -0.312 0.227 -1.774 1.815 sum -3.151 6.382 23.472 24.527 Atomic orbital electron populations 1.22362 0.96707 1.03053 1.02241 1.22185 0.93786 0.89651 1.02445 1.61535 1.60591 1.02446 1.00823 1.22255 0.98998 0.99023 0.87615 1.21213 0.99775 0.96499 0.81923 1.45744 1.47242 1.36524 1.05393 1.16964 0.78821 0.83254 0.82170 1.90861 1.39276 1.27851 1.86276 1.20525 1.05566 0.94841 1.00938 1.21183 0.98253 0.98292 0.91062 1.20164 0.97440 0.92543 1.02937 1.70030 1.21579 1.04999 1.28150 1.25861 0.92599 1.01297 0.86859 1.45525 1.29311 1.17787 1.19340 1.22473 0.88738 0.97574 0.99153 1.21805 0.98014 0.99528 0.88284 1.20862 0.86064 0.85011 0.85076 1.90487 1.38296 1.34968 1.86429 1.41922 1.37742 1.35993 1.05806 1.19610 1.20308 1.19811 0.86142 0.90550 1.25979 0.97700 0.96298 1.01352 1.69665 1.33225 1.26589 1.26696 0.84976 0.78316 0.78012 0.77328 1.19773 1.19571 1.19964 0.92962 0.91461 0.90609 0.92826 0.90048 0.91613 0.88462 0.92007 0.91772 0.74628 0.91036 0.89610 0.91009 0.73002 0.87592 0.85943 0.91031 0.90325 0.86953 0.77033 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.30 9.28 71.98 0.67 -3.63 16 2 C 0.05 1.39 5.59 86.30 0.48 1.88 16 3 N -0.53 -15.45 4.34 -900.79 -3.91 -19.36 16 4 C 0.05 0.93 4.89 86.30 0.42 1.35 16 5 C 0.13 2.69 5.61 86.38 0.48 3.18 16 6 N -0.70 -11.76 5.55 -467.02 -2.59 -14.35 16 7 C 0.60 13.71 6.73 86.47 0.58 14.29 16 8 O -0.57 -18.03 17.12 -4.29 -0.07 -18.10 16 9 C -0.10 -2.04 6.66 40.01 0.27 -1.78 16 10 C 0.05 0.96 7.15 41.96 0.30 1.26 16 11 C -0.07 -1.30 10.24 71.24 0.73 -0.57 16 12 N -0.53 -10.69 11.20 -187.60 -2.10 -12.79 16 13 C 0.22 2.76 12.52 180.33 2.26 5.02 16 14 N -0.44 -5.98 3.17 -539.81 -1.71 -7.69 16 15 C 0.06 0.39 11.07 127.77 1.41 1.81 16 16 C 0.05 1.73 5.30 85.56 0.45 2.18 16 17 C 0.44 20.43 7.54 87.66 0.66 21.09 16 18 O -0.62 -33.66 14.39 -3.05 -0.04 -33.70 16 19 N -0.58 -28.92 5.29 -306.98 -1.62 -30.54 16 20 C -0.33 -18.51 9.68 84.04 0.81 -17.69 16 21 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 23 N -0.92 -49.02 13.05 21.66 0.28 -48.74 16 24 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 28 H 0.05 1.31 5.94 -2.39 -0.01 1.30 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.38 6.59 -2.39 -0.02 1.37 16 31 H 0.05 2.07 6.44 -2.38 -0.02 2.06 16 32 H 0.08 2.21 6.28 -2.39 -0.01 2.19 16 33 H 0.07 1.00 6.24 -2.38 -0.01 0.99 16 34 H 0.10 1.53 7.86 -2.39 -0.02 1.52 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.51 6.46 -2.39 -0.02 1.49 16 37 H 0.42 4.64 8.46 -92.71 -0.78 3.85 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.18 7.94 -2.39 -0.02 1.16 16 41 H 0.25 0.65 8.06 -2.91 -0.02 0.63 16 42 H 0.11 0.26 8.14 -2.38 -0.02 0.25 16 43 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.07 0.74 7.79 -2.39 -0.02 0.73 16 45 H 0.08 2.20 5.64 -2.39 -0.01 2.19 16 46 H 0.11 3.00 7.80 -2.39 -0.02 2.98 16 47 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16 48 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -80.53 396.46 -0.25 -80.78 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: -0.51 Total: 31.52 kcal Atomic # 6 Polarization: 18.13 SS G_CDS: 10.00 Total: 28.13 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -11.65 Total: -133.47 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -0.12 Total: -51.80 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -80.53 -0.25 -80.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266397037.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.282 kcal (2) G-P(sol) polarization free energy of solvation -80.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds